Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002053.1

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

33033 .. 42485

Gene Structure 9453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002053.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

atggttgtgtcagcgccaactggaagtggtaaaacagtcatttttgagctttgcattttgaggcttctttcaagattcatctctgaggatgggaggtttacacctacaaatggaactctcaaaacaatctatattgccccatcaaaggctttagttcaggagaaggttcgtgattggacccagaagtttggatctcggggcatagtttgcttggagctcaccggagataatgaatcttacaacaccaggagtttacaggaagcagacattattttaaccactcctgaggatggtggattgggctttttcagcgatattgcacttctacttattgatgaagttcatctgttgaatgatcctcgtggagcagttttggaagcaatagttagcagaataaaaatgcttgcttacaaccctgaaatgaagtcaagcgctctggctcatgttcgttttctagctgtgtctgccaccattccaaatattgaggaccttgaacctgggaggctgatgacgaagtactacttgaaatttgacacaatgaaatacattattcagacacatgcaaactgcagcttggaagatgctcttcatgtgatatgccgtgctgaggaaatttcatggatacagctcaggcgcaatgagaaaaagcttctaaatgacataaacactgataaagatggtcgacttcgctttcacattcttggtgataaagggaagcgaaaaaagcgtattcaaaccagagaagaaaagatatttcttttggctaatgactgcttgactggtgatccatcggttcatgatttatcccttacccaggatatgaactccatatgctcaaatggctgtagaattgccagatgcatgaaagaattttttatttaccaaaagaattacaaaggagccttgaactcgatgcttttggcaaagtctatgtatcagaaactctgggatgacagtccatacttgctgaaacaattaccagggattggaatggtgactgcgaaggcattacattcgatgggagttaaatcatttgagacactagctgaggctgatcctaggagaattgagatagtcactggtcgaaaatacccatatgggaaccacataaaagagtctctactgtctctacctccaaatgttgagttgaaagttgaggaaactgaatgccgggggcaagggaaactgaagctagcggtgacactgactaggctatcacagacactccaatcaacaaaacgacattatgctgatatgattgtaggttcagaagaagataacctggttctctttcatgagaaaataaggcccagtttcaagcttctagatgaagactctgaagaagatgaggttgccaacaaagttcatgaagatgagattgctgccaaatttcaaactgatgacaaagttgtgacacaacaaacagtatttgaccacatacgtgaaaaggcaaagaacttccctgtcttggtgtcatcaaatagtgtgcttcctccatcatcagagcccttggaattagcaaggaaaagtgctcgtgagaagaagcttggaccgcaaagtggagtagaggttctggaagaattagaatggaataaagttcaaagacgaactgtggtcaatccatcttcagaacttaaagaagcagaacaacatctttctagtatcaaaaatcatccaaatcccagaagctcagctgccctgaacgtcatggatggcagagctgggcctcatactgaccctgatgtcaaacctctaacaggagaaacaatattcgagcacatacgcacaaaagctaagaattttccggtgatcaataaaccaaatgtggaggaggctgagtctttaatccagacaaaacaacgcctatataagactgaaccggagtttagcatgggtattactgccgtgctgaaaggaagaaaaccaaatgaggttatcagagatactgaatgtgataggaggttgctctccggaagctcctgcaaccctcatggaatattgaatgcttctcccggaggtttaagcaatggagcgaatctctcatcaagtaacatgccatctttccatatctccatgttcaagaatctgaagcgacctgcagatccagcaagcactatggagaatactaggaagaaacatcaacactctccaattgtaccaccaaggcactgctcgttgacagcagctggaaaatccagagaagtagaaacatttcttggcccactactactaaacacttcagcaccaaattctaatagtgatatcaaagccacaaattccaacaatgatcttgttgtggattattctgcaggaataatgggtgcccctaagataggacatgctgcatataaaggtccaagtatactcaaggagatcttctatgggataactattgggctcgtggccggttacctgtggaaaatgcatcactggaacgagcagaggaggagaagggagttttatgatctgcttgatgcaggtaaaattactaccgtcgtcgacgaagacgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

837

Amino Acids

93.79

Weight (kDa)

8.24

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1742
Acc36I	ACCTGC	2 cut(s)	2104, 2468
AccB1I	GGYRCC	1 cut(s)	2321
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccI	GTMKAC	3 cut(s)	682, 2362, 2499
AccIII	TCCGGA	1 cut(s)	1970
AciI	CCGC	2 cut(s)	1196, 1553
AclWI	GGATC	5 cut(s)	199, 350, 779, 1049, 2096
AcoI	YGGCCR	1 cut(s)	2403
AcsI	RAATTY	7 cut(s)	527, 612, 869, 1388, 1798, 2248, 2275
AcuI	CTGAAG	5 cut(s)	1208, 1359, 1611, 2108, 2223
AfaI	GTAC	2 cut(s)	518, 2157
AfeI	AGCGCT	1 cut(s)	433
AjnI	CCWGG	5 cut(s)	245, 496, 813, 979, 1281
AjuI	GAANNNNNNNTTGG	2 cut(s)	2199, 2231
AleI	CACNNNNGTG	1 cut(s)	1440
AloI	GAACNNNNNNTCC	2 cut(s)	1554, 1586
Alw21I	GWGCWC	3 cut(s)	219, 1534, 1779
Alw26I	GTCTC	3 cut(s)	1031, 1122, 1131
AlwI	GGATC	5 cut(s)	199, 350, 779, 1049, 2096
AlwNI	CAGNNNCTG	1 cut(s)	2186
Ama87I	CYCGRG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	1970
Aor51HI	AGCGCT	1 cut(s)	433
AoxI	GGCC	4 cut(s)	1307, 1724, 2218, 2403
ApeKI	GCWGC	5 cut(s)	570, 1382, 1694, 2183, 2342
ApoI	RAATTY	7 cut(s)	527, 612, 869, 1388, 1798, 2248, 2275
Asp700I	GAANNNNTTC	1 cut(s)	2211
AspA2I	CCTAGG	1 cut(s)	1058
AspLEI	GCGC	3 cut(s)	16, 434, 636
AspS9I	GGNCC	7 cut(s)	177, 487, 1308, 1550, 1724, 2219, 2354
AsuC2I	CCSGG	2 cut(s)	1172, 2013
AsuHPI	GGTGA	6 cut(s)	211, 716, 794, 1006, 1210, 1819
AsuNHI	GCTAGC	1 cut(s)	1192
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	4 cut(s)	177, 487, 1550, 2354
AvrII	CCTAGG	1 cut(s)	1058
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	2326
BanI	GGYRCC	1 cut(s)	2321
BanII	GRGCYC	3 cut(s)	219, 1509, 2400
BauI	CACGAG	3 cut(s)	360, 1533, 2399
BbsI	GAAGAC	1 cut(s)	1338
Bbv12I	GWGCWC	3 cut(s)	219, 1534, 1779
BbvCI	CCTCAGC	2 cut(s)	606, 1047
BbvI	GCAGC	5 cut(s)	582, 1369, 1681, 2195, 2329
BceAI	ACGGC	2 cut(s)	585, 1889
BcgI	CGANNNNNNTGC	2 cut(s)	996, 1030
BciT130I	CCWGG	5 cut(s)	247, 498, 815, 981, 1283
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	1809
BcnI	CCSGG	2 cut(s)	1172, 2013
BcoDI	GTCTC	3 cut(s)	1031, 1122, 1131
BfaI	CTAG	8 cut(s)	455, 1043, 1059, 1193, 1209, 1325, 1659, 2127
BfmI	CTRYAG	4 cut(s)	568, 844, 2097, 2307
BfoI	RGCGCY	2 cut(s)	17, 435
BfuAI	ACCTGC	2 cut(s)	2104, 2468
BfuI	GTATCC	1 cut(s)	615
BglII	AGATCT	1 cut(s)	2373
BisI	GCNGC	5 cut(s)	571, 1383, 1695, 2184, 2343
BlnI	CCTAGG	1 cut(s)	1058
BlpI	GCTNAGC	1 cut(s)	1690
BlsI	GCNGC	5 cut(s)	572, 1384, 1696, 2185, 2344
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	7 cut(s)	247, 498, 815, 981, 1172, 1283, 2013
Bme18I	GGWCC	4 cut(s)	177, 487, 1550, 2354
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	7 cut(s)	177, 487, 1308, 1550, 1724, 2219, 2354
BmiI	GGNNCC	4 cut(s)	179, 901, 1103, 2323
BmrFI	CCNGG	7 cut(s)	247, 498, 815, 981, 1172, 1283, 2013
BmrI	ACTGGG	1 cut(s)	1305
BmsI	GCATC	5 cut(s)	571, 848, 903, 2434, 2464
BmtI	GCTAGC	1 cut(s)	1196
BmuI	ACTGGG	1 cut(s)	1305
BpiI	GAAGAC	1 cut(s)	1338
BplI	GAGNNNNNCTC	2 cut(s)	2022, 2054
Bpu10I	CCTNAGC	3 cut(s)	606, 629, 1047
Bpu1102I	GCTNAGC	1 cut(s)	1690
BpuEI	CTTGAG	1 cut(s)	2351
BpuMI	CCSGG	2 cut(s)	1172, 2013
BsaAI	YACGTR	1 cut(s)	1442
BsaJI	CCNNGG	7 cut(s)	497, 813, 980, 1058, 1171, 1509, 2162
BsaWI	WCCGGW	4 cut(s)	221, 1804, 1879, 1970
BsaXI	ACNNNNNCTCC	6 cut(s)	1209, 1239, 1554, 1584, 1823, 1853
Bse118I	RCCGGY	1 cut(s)	2405
Bse1I	ACTGG	5 cut(s)	25, 784, 1084, 1311, 2435
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	2 cut(s)	643, 2032
BseAI	TCCGGA	1 cut(s)	1970
BseBI	CCWGG	5 cut(s)	247, 498, 815, 981, 1283
BseDI	CCNNGG	7 cut(s)	497, 813, 980, 1058, 1171, 1509, 2162
BseGI	GGATG	5 cut(s)	94, 295, 955, 1672, 1717
BseMI	GCAATG	2 cut(s)	643, 2032
BseMII	CTCAG	7 cut(s)	75, 276, 597, 643, 1038, 1704, 1827
BseNI	ACTGG	5 cut(s)	25, 784, 1084, 1311, 2435
BseRI	GAGGAG	3 cut(s)	1844, 2458, 2461
BseSI	GKGCMC	1 cut(s)	2326
BseXI	GCAGC	5 cut(s)	582, 1369, 1681, 2195, 2329
BseYI	CCCAGC	1 cut(s)	1721
BshFI	GGCC	4 cut(s)	1309, 1726, 2220, 2405
BshNI	GGYRCC	1 cut(s)	2321
BsiHKAI	GWGCWC	3 cut(s)	219, 1534, 1779
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	7 cut(s)	222, 1171, 1805, 1880, 1971, 2013, 2406
BsmAI	GTCTC	3 cut(s)	1031, 1122, 1131
BsmI	GAATGC	2 cut(s)	1172, 2008
BsnI	GGCC	4 cut(s)	1309, 1726, 2220, 2405
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	6 cut(s)	219, 1509, 1534, 1779, 2326, 2400
Bsp13I	TCCGGA	1 cut(s)	1970
Bsp143I	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
Bsp1720I	GCTNAGC	1 cut(s)	1690
BspACI	CCGC	2 cut(s)	1196, 1553
BspANI	GGCC	4 cut(s)	1309, 1726, 2220, 2405
BspCNI	CTCAG	7 cut(s)	76, 277, 598, 642, 1039, 1703, 1828
BspEI	TCCGGA	1 cut(s)	1970
BspHI	TCATGA	3 cut(s)	796, 1294, 1366
BspLI	GGNNCC	4 cut(s)	179, 901, 1103, 2323
BspMAI	CTGCAG	3 cut(s)	572, 2101, 2311
BspMI	ACCTGC	2 cut(s)	2104, 2468
BspOI	GCTAGC	1 cut(s)	1196
BspPI	GGATC	5 cut(s)	199, 350, 779, 1049, 2096
BspQI	GCTCTTC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	2321
BsrDI	GCAATG	2 cut(s)	643, 2032
BsrFI	RCCGGY	1 cut(s)	2405
BsrI	ACTGG	5 cut(s)	25, 784, 1084, 1311, 2435
BssAI	RCCGGY	1 cut(s)	2405
BssECI	CCNNGG	7 cut(s)	497, 813, 980, 1058, 1171, 1509, 2162
BssMI	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
BssNAI	GTATAC	1 cut(s)	2363
BssSI	CACGAG	3 cut(s)	360, 1533, 2399
BssT1I	CCWWGG	3 cut(s)	1058, 1509, 2162
Bst1107I	GTATAC	1 cut(s)	2363
Bst2BI	CACGAG	3 cut(s)	360, 1533, 2399
Bst2UI	CCWGG	5 cut(s)	247, 498, 815, 981, 1283
Bst4CI	ACNGT	6 cut(s)	37, 956, 1125, 1426, 1612, 2494
Bst6I	CTCTTC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	1442
BstC8I	GCNNGC	3 cut(s)	405, 1194, 2110
BstDEI	CTNAG	9 cut(s)	84, 285, 606, 629, 1047, 1690, 1794, 1836, 2328
BstEII	GGTNACC	1 cut(s)	2408
BstENI	CCTNNNNNAGG	3 cut(s)	812, 1755, 2331
BstF5I	GGATG	5 cut(s)	94, 295, 955, 1672, 1717
BstH2I	RGCGCY	2 cut(s)	17, 435
BstHHI	GCGC	3 cut(s)	16, 434, 636
BstKTI	GATC	9 cut(s)	194, 358, 787, 1057, 1812, 2104, 2290, 2376, 2467
BstMAI	GTCTC	3 cut(s)	1031, 1122, 1131
BstMBI	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
BstMWI	GCNNNNNNNGC	7 cut(s)	207, 309, 464, 724, 840, 1552, 2105
BstNI	CCWGG	5 cut(s)	247, 498, 815, 981, 1283
BstNSI	RCATGY	3 cut(s)	563, 2056, 2342
BstPI	GGTNACC	1 cut(s)	2408
BstSCI	CCNGG	7 cut(s)	245, 496, 813, 979, 1170, 1281, 2011
BstSFI	CTRYAG	4 cut(s)	568, 844, 2097, 2307
BstSLI	GKGCMC	1 cut(s)	2326
BstV1I	GCAGC	5 cut(s)	582, 1369, 1681, 2195, 2329
BstV2I	GAAGAC	1 cut(s)	1338
BstX2I	RGATCY	3 cut(s)	191, 2101, 2373
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	3 cut(s)	191, 2101, 2373
BstZ17I	GTATAC	1 cut(s)	2363
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	4 cut(s)	1309, 1726, 2220, 2405
BtsCI	GGATG	5 cut(s)	94, 295, 955, 1672, 1717
BtsI	GCAGTG	1 cut(s)	2167
BtsIMutI	CAGTG	5 cut(s)	666, 1077, 1202, 2167, 2428
BveI	ACCTGC	2 cut(s)	2104, 2468
Cac8I	GCNNGC	3 cut(s)	405, 1194, 2110
CaiI	CAGNNNCTG	1 cut(s)	2186
CciI	TCATGA	3 cut(s)	796, 1294, 1366
CfoI	GCGC	3 cut(s)	16, 434, 636
Cfr10I	RCCGGY	1 cut(s)	2405
Cfr13I	GGNCC	7 cut(s)	177, 487, 1308, 1550, 1724, 2219, 2354
CsiI	ACCWGGT	1 cut(s)	1281
Csp6I	GTAC	2 cut(s)	517, 2156
CviQI	GTAC	2 cut(s)	517, 2156
DdeI	CTNAG	9 cut(s)	84, 285, 606, 629, 1047, 1690, 1794, 1836, 2328
DpnI	GATC	9 cut(s)	193, 357, 786, 1056, 1811, 2103, 2289, 2375, 2466
DpnII	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
DrdI	GACNNNNNNGTC	1 cut(s)	1742
DseDI	GACNNNNNNGTC	1 cut(s)	1742
EaeI	YGGCCR	1 cut(s)	2403
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	3 cut(s)	1058, 1509, 2162
Eco24I	GRGCYC	3 cut(s)	219, 1509, 2400
Eco32I	GATATC	1 cut(s)	2263
Eco47I	GGWCC	4 cut(s)	177, 487, 1550, 2354
Eco47III	AGCGCT	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	5 cut(s)	1208, 1359, 1611, 2108, 2223
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	2408
EcoICRI	GAGCTC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	3 cut(s)	812, 1755, 2331
EcoO109I	RGGNCCY	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	2408
EcoRII	CCWGG	5 cut(s)	245, 496, 813, 979, 1281
EcoRV	GATATC	1 cut(s)	2263
EcoT14I	CCWWGG	3 cut(s)	1058, 1509, 2162
EcoT22I	ATGCAT	2 cut(s)	863, 2427
EcoT38I	GRGCYC	3 cut(s)	219, 1509, 2400
ErhI	CCWWGG	3 cut(s)	1058, 1509, 2162
FalI	AAGNNNNNCTT	6 cut(s)	506, 538, 570, 602, 2360, 2392
FauNDI	CATATG	2 cut(s)	830, 1096
FbaI	TGATCA	1 cut(s)	1809
FblI	GTMKAC	3 cut(s)	682, 2362, 2499
Fnu4HI	GCNGC	5 cut(s)	571, 1383, 1695, 2184, 2343
FokI	GGATG	5 cut(s)	101, 302, 962, 1659, 1724
FriOI	GRGCYC	3 cut(s)	219, 1509, 2400
Fsp4HI	GCNGC	5 cut(s)	571, 1383, 1695, 2184, 2343
FspBI	CTAG	8 cut(s)	455, 1043, 1059, 1193, 1209, 1325, 1659, 2127
GlaI	GCGC	3 cut(s)	15, 433, 635
GluI	GCNGC	5 cut(s)	571, 1383, 1695, 2184, 2343
GsaI	CCCAGC	1 cut(s)	1725
HaeII	RGCGCY	2 cut(s)	17, 435
HaeIII	GGCC	4 cut(s)	1309, 1726, 2220, 2405
HapII	CCGG	7 cut(s)	222, 1171, 1805, 1880, 1971, 2013, 2406
HhaI	GCGC	3 cut(s)	16, 434, 636
Hin6I	GCGC	3 cut(s)	14, 432, 634
HinP1I	GCGC	3 cut(s)	14, 432, 634
HincII	GTYRAC	3 cut(s)	683, 2178, 2500
HindII	GTYRAC	3 cut(s)	683, 2178, 2500
HindIII	AAGCTT	3 cut(s)	647, 1319, 1544
HinfI	GANTC	7 cut(s)	75, 233, 1115, 1334, 1838, 2035, 2083
HpaII	CCGG	7 cut(s)	222, 1171, 1805, 1880, 1971, 2013, 2406
HphI	GGTGA	6 cut(s)	211, 716, 794, 1006, 1210, 1819
Hpy166II	GTNNAC	6 cut(s)	99, 254, 683, 2178, 2363, 2500
Hpy188I	TCNGA	9 cut(s)	85, 555, 939, 1270, 1339, 1504, 1630, 1940, 2088
Hpy8I	GTNNAC	6 cut(s)	99, 254, 683, 2178, 2363, 2500
Hpy99I	CGWCG	3 cut(s)	2498, 2501, 2504
HpyAV	CCTTC	3 cut(s)	157, 997, 2445
HpyCH4III	ACNGT	6 cut(s)	37, 956, 1125, 1426, 1612, 2494
HpyCH4IV	ACGT	2 cut(s)	1441, 1704
HpyF10VI	GCNNNNNNNGC	7 cut(s)	207, 309, 464, 724, 840, 1552, 2105
HpyF3I	CTNAG	9 cut(s)	84, 285, 606, 629, 1047, 1690, 1794, 1836, 2328
HpySE526I	ACGT	2 cut(s)	1441, 1704
HspAI	GCGC	3 cut(s)	14, 432, 634
Kpn2I	TCCGGA	1 cut(s)	1970
Ksp22I	TGATCA	1 cut(s)	1809
Kzo9I	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	5 cut(s)	214, 365, 899, 1982, 2030
Lsp1109I	GCAGC	5 cut(s)	582, 1369, 1681, 2195, 2329
LweI	GCATC	5 cut(s)	571, 848, 903, 2434, 2464
MabI	ACCWGGT	1 cut(s)	1281
MaeI	CTAG	8 cut(s)	455, 1043, 1059, 1193, 1209, 1325, 1659, 2127
MaeII	ACGT	2 cut(s)	1441, 1704
MaeIII	GTNAC	6 cut(s)	994, 1075, 1198, 1411, 2048, 2408
MalI	GATC	9 cut(s)	193, 357, 786, 1056, 1811, 2103, 2289, 2375, 2466
MboI	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
MfeI	CAATTG	1 cut(s)	2151
MflI	RGATCY	3 cut(s)	191, 2101, 2373
MhlI	GDGCHC	6 cut(s)	219, 1509, 1534, 1779, 2326, 2400
MlyI	GAGTC	3 cut(s)	1124, 1328, 1847
MmeI	TCCRAC	1 cut(s)	2304
Mph1103I	ATGCAT	2 cut(s)	863, 2427
MroI	TCCGGA	1 cut(s)	1970
MroXI	GAANNNNTTC	1 cut(s)	2211
MseI	TTAA	5 cut(s)	275, 1026, 1635, 1844, 2021
MslI	CAYNNNNRTG	2 cut(s)	1371, 1440
MspA1I	CMGCKG	2 cut(s)	1694, 2186
MspI	CCGG	7 cut(s)	222, 1171, 1805, 1880, 1971, 2013, 2406
MspR9I	CCNGG	7 cut(s)	247, 498, 815, 981, 1172, 1283, 2013
MunI	CAATTG	1 cut(s)	2151
Mva1269I	GAATGC	2 cut(s)	1172, 2008
MvaI	CCWGG	5 cut(s)	247, 498, 815, 981, 1283
MwoI	GCNNNNNNNGC	7 cut(s)	207, 309, 464, 724, 840, 1552, 2105
NciI	CCSGG	2 cut(s)	1172, 2013
NdeI	CATATG	2 cut(s)	830, 1096
NdeII	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
NheI	GCTAGC	1 cut(s)	1192
NlaIV	GGNNCC	4 cut(s)	179, 901, 1103, 2323
NmuCI	GTSAC	4 cut(s)	994, 1075, 1198, 1411
NsiI	ATGCAT	2 cut(s)	863, 2427
NspI	RCATGY	3 cut(s)	563, 2056, 2342
OliI	CACNNNNGTG	1 cut(s)	1440
PagI	TCATGA	3 cut(s)	796, 1294, 1366
PciSI	GCTCTTC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	2505
PctI	GAATGC	2 cut(s)	1172, 2008
PdmI	GAANNNNTTC	1 cut(s)	2211
PfeI	GAWTC	4 cut(s)	75, 233, 2035, 2083
PflMI	CCANNNNNTGG	1 cut(s)	986
PfoI	TCCNGGA	1 cut(s)	2011
PkrI	GCNGC	5 cut(s)	572, 1384, 1696, 2185, 2344
PleI	GAGTC	3 cut(s)	1123, 1328, 1846
PpsI	GAGTC	3 cut(s)	1123, 1328, 1846
Ppu21I	YACGTR	1 cut(s)	1442
PpuMI	RGGWCCY	1 cut(s)	487
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	5 cut(s)	245, 496, 813, 979, 1281
PspEI	GGTNACC	1 cut(s)	2408
PspFI	CCCAGC	1 cut(s)	1721
PspGI	CCWGG	5 cut(s)	245, 496, 813, 979, 1281
PspN4I	GGNNCC	4 cut(s)	179, 901, 1103, 2323
PspPI	GGNCC	7 cut(s)	177, 487, 1308, 1550, 1724, 2219, 2354
PspPPI	RGGWCCY	1 cut(s)	487
PstI	CTGCAG	3 cut(s)	572, 2101, 2311
PstNI	CAGNNNCTG	1 cut(s)	2186
PsuI	RGATCY	3 cut(s)	191, 2101, 2373
PvuII	CAGCTG	2 cut(s)	1694, 2186
RsaI	GTAC	2 cut(s)	518, 2157
RsaNI	GTAC	2 cut(s)	517, 2156
RseI	CAYNNNNRTG	2 cut(s)	1371, 1440
SacI	GAGCTC	1 cut(s)	219
SalI	GTCGAC	2 cut(s)	681, 2498
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	5 cut(s)	275, 1026, 1635, 1844, 2021
SatI	GCNGC	5 cut(s)	571, 1383, 1695, 2184, 2343
Sau3AI	GATC	9 cut(s)	191, 355, 784, 1054, 1809, 2101, 2287, 2373, 2464
Sau96I	GGNCC	7 cut(s)	177, 487, 1308, 1550, 1724, 2219, 2354
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	3 cut(s)	1124, 1328, 1847
ScrFI	CCNGG	7 cut(s)	247, 498, 815, 981, 1172, 1283, 2013
SduI	GDGCHC	6 cut(s)	219, 1509, 1534, 1779, 2326, 2400
SexAI	ACCWGGT	1 cut(s)	1281
SfaNI	GCATC	5 cut(s)	571, 848, 903, 2434, 2464
SfcI	CTRYAG	4 cut(s)	568, 844, 2097, 2307
SgrDI	CGTCGACG	1 cut(s)	2498
SinI	GGWCC	4 cut(s)	177, 487, 1550, 2354
SmiMI	CAYNNNNRTG	2 cut(s)	1371, 1440
SmlI	CTYRAG	1 cut(s)	2366
SmoI	CTYRAG	1 cut(s)	2366
SsiI	CCGC	2 cut(s)	1196, 1553
SspI	AATATT	3 cut(s)	481, 1770, 1998
SspMI	CTAG	8 cut(s)	455, 1043, 1059, 1193, 1209, 1325, 1659, 2127
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	7 cut(s)	245, 496, 813, 979, 1170, 1281, 2011
StyI	CCWWGG	3 cut(s)	1058, 1509, 2162
TaaI	ACNGT	6 cut(s)	37, 956, 1125, 1426, 1612, 2494
TaiI	ACGT	2 cut(s)	1444, 1707
TaqI	TCGA	6 cut(s)	682, 911, 1016, 1084, 1773, 2499
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	4 cut(s)	75, 233, 2035, 2083
Tru1I	TTAA	5 cut(s)	275, 1026, 1635, 1844, 2021
Tru9I	TTAA	5 cut(s)	275, 1026, 1635, 1844, 2021
TscAI	CASTG	5 cut(s)	673, 1084, 1209, 2174, 2435
TseFI	GTSAC	4 cut(s)	994, 1075, 1198, 1411
TseI	GCWGC	5 cut(s)	570, 1382, 1694, 2183, 2342
Tsp45I	GTSAC	4 cut(s)	994, 1075, 1198, 1411
TspRI	CASTG	5 cut(s)	673, 1084, 1209, 2174, 2435
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	4 cut(s)	177, 487, 1550, 2354
XagI	CCTNNNNNAGG	3 cut(s)	812, 1755, 2331
XapI	RAATTY	7 cut(s)	527, 612, 869, 1388, 1798, 2248, 2275
XbaI	TCTAGA	1 cut(s)	1324
XceI	RCATGY	3 cut(s)	563, 2056, 2342
XmaJI	CCTAGG	1 cut(s)	1058
XmiI	GTMKAC	3 cut(s)	682, 2362, 2499
XmnI	GAANNNNTTC	1 cut(s)	2211
XspI	CTAG	8 cut(s)	455, 1043, 1059, 1193, 1209, 1325, 1659, 2127
ZrmI	AGTACT	1 cut(s)	518
Zsp2I	ATGCAT	2 cut(s)	863, 2427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.