Rorug02G0246000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002006
Physical Location & Seq
Reverse (-)
25567397 .. 25572931
5535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0246000.1

Sequence Viewer

Length: 927 bp
ATGGAACACAGAACACAGCAACCTGCAAGGCTACAACCAACAACCAGTCTCCGCCAGTCCGCCTCTGCAGTCTCTGAGCTTCGCCTCCAGGCTCCAGTGTTTTCAATCTGCTGGGTGACTGTTGCAGTAAGGAAAAGATCGTCTCCCATCACTTGTCAGCCGTTTTCAATCTCAGCAAAGAACTCAAAGCCGCCATTGACGTGCTTCCAAGCTTTGCGTCGCGGTCCAAACGACGTTATCGTCAAGTCAAGGAGGGATTCTCCAGGCCTTATCTTCTCCAGGCCTCCACCAAGATGGCTTTGGAATCCTATACATTTGGACCGTTCAAAATCGGCAGCAGGGAAGTGTTTCACAGCTCTAATCTATCGTATGCCTTGGATAATCTGTGCCATGTTGTTCCTGATGAACAAAATACGGCAGGAGCTGCAGTCATATTTGTCAAATGGACCAATTACAATTGTGACTGGGAGTCAAACAGGTGCTAGCAGATATGGTATAATTATTGTTGCAGTAGTGGCAGGATATGGCTACTTTTGGTGGAAGGGGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGCTTAGCTGATGCTGGCAAGTCTTTTTCTAAACAGATTGACGGTGTCTTTTCATCGATTTCAATCACCAGGCGACAATTATCTTCAAACTTGGATGGTGTGGACTGTAATTTAGCTGAGAGTATTGAAACTACTGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGGATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACATAATAGAAGGCAAGCAGGATTCAACTAATGACGGAGTGTGGAGGTTGTGTGACTATGCCAAGAGATTGGAAAATAGCAGAACCACAGAACGTATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

308

Amino Acids

34.73

Weight (kDa)

9.96

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 162 - 281 1.6e-38 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 31
AccII CGCG 1 cut(s) 222
AciI CCGC 4 cut(s) 52, 60, 191, 222
AgsI TTSAA 9 cut(s) 105, 168, 327, 645, 669, 710, 743, 791, 849
AhdI GACNNNNNGTC 1 cut(s) 468
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 4 cut(s) 87, 262, 278, 650
AluBI AGCT 7 cut(s) 79, 212, 356, 424, 585, 590, 698
AluI AGCT 7 cut(s) 79, 212, 356, 424, 585, 590, 698
Alw26I GTCTC 3 cut(s) 53, 76, 147
AlwNI CAGNNNCTG 2 cut(s) 74, 424
AoxI GGCC 2 cut(s) 265, 281
ApeKI GCWGC 2 cut(s) 335, 424
Asp700I GAANNNNTTC 2 cut(s) 347, 918
AspS9I GGNCC 3 cut(s) 224, 319, 446
AsuHPI GGTGA 2 cut(s) 127, 640
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 3 cut(s) 224, 319, 446
BbvI GCAGC 2 cut(s) 347, 411
BccI CCATC 4 cut(s) 155, 288, 671, 773
BceAI ACGGC 2 cut(s) 145, 431
BciT130I CCWGG 4 cut(s) 89, 264, 280, 652
BcoDI GTCTC 3 cut(s) 53, 76, 147
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 2 cut(s) 66, 425
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 3 cut(s) 191, 336, 425
BlpI GCTNAGC 1 cut(s) 586
BlsI GCNGC 3 cut(s) 192, 337, 426
Bme1390I CCNGG 4 cut(s) 89, 264, 280, 652
Bme18I GGWCC 3 cut(s) 224, 319, 446
BmeRI GACNNNNNGTC 1 cut(s) 468
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 3 cut(s) 224, 319, 446
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 4 cut(s) 89, 264, 280, 652
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 583
BmtI GCTAGC 1 cut(s) 486
BmuI ACTGGG 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 4 cut(s) 71, 78, 246, 262
Bpu1102I GCTNAGC 1 cut(s) 586
Bsa29I ATCGAT 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 374
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 859, 889
Bse1I ACTGG 4 cut(s) 45, 55, 95, 469
Bse8I GATNNNNATC 1 cut(s) 644
BseBI CCWGG 4 cut(s) 89, 264, 280, 652
BseCI ATCGAT 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 682
BseJI GATNNNNATC 1 cut(s) 644
BseMII CTCAG 3 cut(s) 66, 186, 690
BseNI ACTGG 4 cut(s) 45, 55, 95, 469
BseXI GCAGC 2 cut(s) 347, 411
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 267, 283
BshVI ATCGAT 1 cut(s) 638
BsmAI GTCTC 3 cut(s) 53, 76, 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 2 cut(s) 267, 283
Bsp143I GATC 1 cut(s) 137
Bsp1720I GCTNAGC 1 cut(s) 586
BspACI CCGC 4 cut(s) 52, 60, 191, 222
BspANI GGCC 2 cut(s) 267, 283
BspCNI CTCAG 3 cut(s) 67, 185, 691
BspDI ATCGAT 1 cut(s) 638
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 2 cut(s) 70, 429
BspMI ACCTGC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 486
BsrI ACTGG 4 cut(s) 45, 55, 95, 469
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 374
Bst2UI CCWGG 4 cut(s) 89, 264, 280, 652
Bst4CI ACNGT 5 cut(s) 121, 323, 626, 689, 718
BstAPI GCANNNNNTGC 1 cut(s) 424
BstC8I GCNNGC 3 cut(s) 484, 598, 839
BstDEI CTNAG 5 cut(s) 75, 172, 586, 699, 816
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 3 cut(s) 53, 76, 147
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 424, 515
BstNI CCWGG 4 cut(s) 89, 264, 280, 652
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 4 cut(s) 87, 262, 278, 650
BstSFI CTRYAG 2 cut(s) 66, 425
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 347, 411
BstXI CCANNNNNNTGG 2 cut(s) 294, 892
Bsu15I ATCGAT 1 cut(s) 638
BsuRI GGCC 2 cut(s) 267, 283
BsuTUI ATCGAT 1 cut(s) 638
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 2 cut(s) 102, 804
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 484, 598, 839
CaiI CAGNNNCTG 2 cut(s) 74, 424
Cfr13I GGNCC 3 cut(s) 224, 319, 446
ClaI ATCGAT 1 cut(s) 638
CseI GACGC 1 cut(s) 206
CviAII CATG 2 cut(s) 391, 794
DdeI CTNAG 5 cut(s) 75, 172, 586, 699, 816
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
DrdI GACNNNNNNGTC 1 cut(s) 239
DriI GACNNNNNGTC 1 cut(s) 468
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 1 cut(s) 468
EciI GGCGGA 2 cut(s) 41, 49
Eco130I CCWWGG 1 cut(s) 374
Eco147I AGGCCT 2 cut(s) 267, 283
Eco47I GGWCC 3 cut(s) 224, 319, 446
EcoRII CCWGG 4 cut(s) 87, 262, 278, 650
EcoT14I CCWWGG 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 394, 797
FatI CATG 2 cut(s) 390, 793
Fnu4HI GCNGC 3 cut(s) 191, 336, 425
FokI GGATG 1 cut(s) 689
Fsp4HI GCNGC 3 cut(s) 191, 336, 425
FspBI CTAG 1 cut(s) 483
GluI GCNGC 3 cut(s) 191, 336, 425
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 4 cut(s) 71, 78, 246, 262
HaeIII GGCC 2 cut(s) 267, 283
HgaI GACGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 394, 797
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 6 cut(s) 257, 304, 469, 761, 805, 845
HphI GGTGA 2 cut(s) 127, 640
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 400, 557, 809
Hpy8I GTNNAC 1 cut(s) 685
Hpy99I CGWCG 2 cut(s) 222, 236
HpyAV CCTTC 2 cut(s) 535, 827
HpyCH4III ACNGT 5 cut(s) 121, 323, 626, 689, 718
HpyCH4IV ACGT 4 cut(s) 200, 234, 580, 916
HpyCH4V TGCA 7 cut(s) 26, 68, 125, 427, 509, 572, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 515
HpyF3I CTNAG 5 cut(s) 75, 172, 586, 699, 816
HpySE526I ACGT 4 cut(s) 200, 234, 580, 916
Hsp92II CATG 2 cut(s) 394, 797
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 2 cut(s) 97, 421
Lsp1109I GCAGC 2 cut(s) 347, 411
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 483
MaeII ACGT 4 cut(s) 200, 234, 580, 916
MaeIII GTNAC 3 cut(s) 115, 460, 875
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 2 cut(s) 265, 657
MfeI CAATTG 1 cut(s) 456
MluCI AATT 5 cut(s) 450, 456, 498, 659, 691
MlyI GAGTC 2 cut(s) 478, 799
MnlI CCTC 6 cut(s) 73, 95, 246, 294, 727, 861
MroXI GAANNNNTTC 2 cut(s) 347, 918
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 2 cut(s) 199, 292
MspR9I CCNGG 4 cut(s) 89, 264, 280, 652
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 4 cut(s) 89, 264, 280, 652
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 424, 515
NdeII GATC 1 cut(s) 137
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 394, 797
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 115, 460, 875
NspI RCATGY 1 cut(s) 797
PceI AGGCCT 2 cut(s) 267, 283
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 347, 918
PfeI GAWTC 4 cut(s) 257, 304, 761, 845
PflFI GACNNNGTC 1 cut(s) 626
PkrI GCNGC 3 cut(s) 192, 337, 426
PleI GAGTC 2 cut(s) 477, 799
PpsI GAGTC 2 cut(s) 477, 799
Psp6I CCWGG 4 cut(s) 87, 262, 278, 650
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 4 cut(s) 87, 262, 278, 650
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 224, 319, 446
PstI CTGCAG 2 cut(s) 70, 429
PstNI CAGNNNCTG 2 cut(s) 74, 424
PsyI GACNNNGTC 1 cut(s) 626
RseI CAYNNNNRTG 2 cut(s) 199, 292
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 3 cut(s) 191, 336, 425
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 3 cut(s) 224, 319, 446
SchI GAGTC 2 cut(s) 478, 799
ScrFI CCNGG 4 cut(s) 89, 264, 280, 652
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 2 cut(s) 66, 425
SinI GGWCC 3 cut(s) 224, 319, 446
SmiMI CAYNNNNRTG 2 cut(s) 199, 292
Sse9I AATT 5 cut(s) 450, 456, 498, 659, 691
SseBI AGGCCT 2 cut(s) 267, 283
SsiI CCGC 4 cut(s) 52, 60, 191, 222
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 2 cut(s) 267, 283
StyD4I CCNGG 4 cut(s) 87, 262, 278, 650
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 5 cut(s) 121, 323, 626, 689, 718
TaiI ACGT 4 cut(s) 203, 237, 583, 919
TaqI TCGA 1 cut(s) 638
TasI AATT 5 cut(s) 450, 456, 498, 659, 691
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 257, 304, 761, 845
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 2 cut(s) 102, 804
TseFI GTSAC 3 cut(s) 115, 460, 875
TseI GCWGC 2 cut(s) 335, 424
Tsp45I GTSAC 3 cut(s) 115, 460, 875
TspDTI ATGAA 2 cut(s) 419, 624
TspGWI ACGGA 2 cut(s) 788, 873
TspRI CASTG 2 cut(s) 102, 804
Tth111I GACNNNGTC 1 cut(s) 626
VpaK11BI GGWCC 3 cut(s) 224, 319, 446
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmnI GAANNNNTTC 2 cut(s) 347, 918
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.