Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

3517209 .. 3524203

Gene Structure 6995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGGATTCGTATACACTTAAGTCCGTGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAAAATTTGATGCAGTATCGCTGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCAATATAGCAGTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAATTGCTTGCTCACAACCCTGAAATGAAGTCAAGCTCTCAGGCTCATGTTCGTTTTCTAACTGTGTCTGCCACCATTCCAAATATTCAGGACATTGGCTACGCCCCAGCAAAAAATGATTTTCTATTTGAAAAGTTTTTTGCTCAACTAGAAAAGGTGCACAAGAAGCAGCACAGATACGTACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGCTGTTGGTTATCACAATGGTGGCCTTTTCCTCAAGGATCGTAATCTCATTGGAAGTCTTTTACTTAAGGGTGATGTTCAAATTTTGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCAGTCAAACAAAGAAAAAGGAGTCTACATGGAAATTGACGGATCTGCACTACTACAGATGAGTGGGAGGGCAGGTCTACCACCATTTGATGATACCGGAATGGTTATAATCATGACAAGAAGAGATATGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCTCAGTACATTGCTTTCATGTTTGACGGAGCATTTAACTGCGGAGATAGCTATGACTGTTTACTTGAATTTTGTATCATCTATCTACTGGAATATGAAGGGATACAGCTTAGGCGCAACGAGAAGAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGACAAAGGGAAGCGAAAAAAACGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGAGTGGTGATCCTTCGGCTCATGATTTATCCCTTGCCCAGGATATGAACCCCATATGCTCAAATGGCTGTAGAATTGTCAGATGCATGAAAGAATTTTTTATTTACCAAAAGAATTACAAAGGAGCCTTGAACTTGATGCTTTTGGCTAAATCTATGTATCAAAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCAAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGAGAATTGAGATAGTCACTGGTCGAAAATACTCATTTGGGAACCATATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTCGAGTTGAAAGTTGAGGAAACTGAATGCCCGGGGCAAGGGAAATTGAAGCTAGCGGTAACACTGACTAGGCTATCACAGACGCTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGATTCTCTTTCATGAGAAAATAAGCCCCTATAGCGCAACAGTTCTCCTGTCAAATCCCCAACAAGGAAAGCTGACTGTTAAGGCTGATCTTATATTTGAAGAATACAGTGAAGTCCCTGCCCTGATATTTCTAGTTTCCTTCACTTTACAAGTTACTATTGACTGGTATAATCTTGGTATTGATCTAAACCGGGAGCTTATATTAATGAAGGAAAGCAATCTAAGTGCAAATAACAAACGAGGAAAAAAAAGCACCCTCTCTTCCTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

659

Amino Acids

74.23

Weight (kDa)

8.46

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec63	PF02889	345 - 603	1.2e-28	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	830
AccB7I	CCANNNNNTGG	1 cut(s)	1409
AccI	GTMKAC	4 cut(s)	11, 792, 844, 1105
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	984, 1619
AclWI	GGATC	5 cut(s)	257, 657, 817, 1202, 1472
AcsI	RAATTY	4 cut(s)	164, 693, 1010, 1292
AfaI	GTAC	2 cut(s)	486, 950
AfiI	CCNNNNNNNGG	4 cut(s)	1237, 1409, 1601, 1769
AflII	CTTAAG	2 cut(s)	17, 677
AjnI	CCWGG	2 cut(s)	1236, 1402
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	9 cut(s)	339, 566, 993, 1051, 1072, 1469, 1615, 1777, 1903
AluI	AGCT	9 cut(s)	339, 566, 993, 1051, 1072, 1469, 1615, 1777, 1903
Alw21I	GWGCWC	2 cut(s)	465, 704
Alw26I	GTCTC	3 cut(s)	1454, 1545, 1554
Alw44I	GTGCAC	2 cut(s)	461, 700
AlwI	GGATC	5 cut(s)	257, 657, 817, 1202, 1472
Ama87I	CYCGRG	1 cut(s)	1594
AoxI	GGCC	2 cut(s)	504, 634
ApaLI	GTGCAC	2 cut(s)	461, 700
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	4 cut(s)	164, 693, 1010, 1292
AseI	ATTAAT	1 cut(s)	1910
Asp700I	GAANNNNTTC	1 cut(s)	96
AspA2I	CCTAGG	1 cut(s)	1481
AspLEI	GCGC	3 cut(s)	142, 1059, 1742
AsuC2I	CCSGG	3 cut(s)	1595, 1596, 1898
AsuHPI	GGTGA	4 cut(s)	695, 1139, 1217, 1429
AsuNHI	GCTAGC	1 cut(s)	1615
AvaI	CYCGRG	1 cut(s)	1594
AvrII	CCTAGG	1 cut(s)	1481
BaeGI	GKGCMC	2 cut(s)	465, 704
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	465, 704
BbvCI	CCTCAGC	1 cut(s)	1470
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	4 cut(s)	191, 928, 1094, 1435
BcgI	CGANNNNNNTGC	2 cut(s)	1419, 1453
BciT130I	CCWGG	2 cut(s)	1238, 1404
BciVI	GTATCC	1 cut(s)	1038
BcnI	CCSGG	3 cut(s)	1595, 1596, 1898
BcoDI	GTCTC	3 cut(s)	1454, 1545, 1554
BfaI	CTAG	6 cut(s)	452, 1466, 1482, 1616, 1632, 1838
BfmI	CTRYAG	3 cut(s)	821, 1267, 1735
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	2 cut(s)	17, 677
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	1038
BisI	GCNGC	1 cut(s)	473
BlnI	CCTAGG	1 cut(s)	1481
BlsI	GCNGC	1 cut(s)	474
Bme1390I	CCNGG	5 cut(s)	1238, 1404, 1595, 1596, 1898
BmeT110I	CYCGRG	1 cut(s)	1594
BmiI	GGNNCC	3 cut(s)	42, 1324, 1526
BmrFI	CCNGG	5 cut(s)	1238, 1404, 1595, 1596, 1898
BmsI	GCATC	3 cut(s)	160, 1271, 1326
BmtI	GCTAGC	1 cut(s)	1619
Bpu10I	CCTNAGC	3 cut(s)	557, 1052, 1470
BpuEI	CTTGAG	2 cut(s)	629, 1219
BpuMI	CCSGG	3 cut(s)	1595, 1596, 1898
BsaAI	YACGTR	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	6 cut(s)	24, 1236, 1403, 1481, 1594, 1595
BsaWI	WCCGGW	1 cut(s)	863
BsaXI	ACNNNNNCTCC	4 cut(s)	826, 856, 1632, 1662
Bsc4I	CCNNNNNNNGG	4 cut(s)	1237, 1409, 1601, 1769
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	4 cut(s)	151, 1035, 1507, 1874
Bse3DI	GCAATG	1 cut(s)	951
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	2 cut(s)	1238, 1404
BseDI	CCNNGG	6 cut(s)	24, 1236, 1403, 1481, 1594, 1595
BseGI	GGATG	3 cut(s)	202, 932, 1378
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	4 cut(s)	1237, 1409, 1601, 1769
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	5 cut(s)	129, 356, 506, 959, 1461
BseNI	ACTGG	4 cut(s)	151, 1035, 1507, 1874
BseSI	GKGCMC	2 cut(s)	465, 704
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	506, 636
BsiHKAI	GWGCWC	2 cut(s)	465, 704
BsiHKCI	CYCGRG	1 cut(s)	1594
BsiSI	CCGG	4 cut(s)	38, 864, 1595, 1897
BslFI	GGGAC	1 cut(s)	1805
BslI	CCNNNNNNNGG	4 cut(s)	1237, 1409, 1601, 1769
BsmAI	GTCTC	3 cut(s)	1454, 1545, 1554
BsmFI	GGGAC	1 cut(s)	1805
BsmI	GAATGC	2 cut(s)	98, 1595
BsnI	GGCC	2 cut(s)	506, 636
BsoBI	CYCGRG	1 cut(s)	1594
Bsp1286I	GDGCHC	2 cut(s)	465, 704
Bsp143I	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
BspACI	CCGC	2 cut(s)	984, 1619
BspANI	GGCC	2 cut(s)	506, 636
BspCNI	CTCAG	5 cut(s)	128, 355, 505, 958, 1462
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	3 cut(s)	879, 1219, 1717
BspLI	GGNNCC	3 cut(s)	42, 1324, 1526
BspMI	ACCTGC	1 cut(s)	830
BspOI	GCTAGC	1 cut(s)	1619
BspPI	GGATC	5 cut(s)	257, 657, 817, 1202, 1472
BspTI	CTTAAG	2 cut(s)	17, 677
BsrDI	GCAATG	1 cut(s)	951
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	151, 1035, 1507, 1874
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	6 cut(s)	24, 1236, 1403, 1481, 1594, 1595
BssMI	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
BssNAI	GTATAC	1 cut(s)	12
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	1481
Bst1107I	GTATAC	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	1238, 1404
Bst4CI	ACNGT	9 cut(s)	367, 499, 748, 1001, 1379, 1548, 1747, 1783, 1814
Bst6I	CTCTTC	2 cut(s)	883, 1972
BstAFI	CTTAAG	2 cut(s)	17, 677
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	39, 312, 1617
BstDEI	CTNAG	8 cut(s)	115, 342, 492, 557, 945, 1052, 1470, 1928
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	1235
BstF5I	GGATG	3 cut(s)	202, 932, 1378
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	142, 1059, 1742
BstKTI	GATC	7 cut(s)	265, 652, 812, 1210, 1480, 1795, 1891
BstMAI	GTCTC	3 cut(s)	1454, 1545, 1554
BstMBI	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
BstMWI	GCNNNNNNNGC	6 cut(s)	216, 469, 553, 990, 1263, 1737
BstNI	CCWGG	2 cut(s)	1238, 1404
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	5 cut(s)	1236, 1402, 1593, 1594, 1896
BstSFI	CTRYAG	3 cut(s)	821, 1267, 1735
BstSLI	GKGCMC	2 cut(s)	465, 704
BstSNI	TACGTA	1 cut(s)	484
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BstZ17I	GTATAC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	1038
BsuRI	GGCC	2 cut(s)	506, 636
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	202, 932, 1378
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	5 cut(s)	586, 1089, 1500, 1625, 1819
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	3 cut(s)	39, 312, 1617
CciI	TCATGA	3 cut(s)	879, 1219, 1717
CfoI	GCGC	3 cut(s)	142, 1059, 1742
Cfr10I	RCCGGY	1 cut(s)	37
Cfr9I	CCCGGG	1 cut(s)	1594
CseI	GACGC	1 cut(s)	1654
Csp6I	GTAC	2 cut(s)	485, 949
CviQI	GTAC	2 cut(s)	485, 949
DdeI	CTNAG	8 cut(s)	115, 342, 492, 557, 945, 1052, 1470, 1928
DpnI	GATC	7 cut(s)	264, 651, 811, 1209, 1479, 1794, 1890
DpnII	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
Eam1104I	CTCTTC	2 cut(s)	883, 1972
EarI	CTCTTC	2 cut(s)	883, 1972
Eco105I	TACGTA	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	1481
Eco88I	CYCGRG	1 cut(s)	1594
EcoNI	CCTNNNNNAGG	1 cut(s)	1235
EcoRII	CCWGG	2 cut(s)	1236, 1402
EcoT14I	CCWWGG	1 cut(s)	1481
EcoT22I	ATGCAT	1 cut(s)	1286
ErhI	CCWWGG	1 cut(s)	1481
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	1 cut(s)	1805
FauNDI	CATATG	1 cut(s)	1253
FblI	GTMKAC	4 cut(s)	11, 792, 844, 1105
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	3 cut(s)	209, 939, 1385
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	6 cut(s)	452, 1466, 1482, 1616, 1632, 1838
GlaI	GCGC	3 cut(s)	141, 1058, 1741
GluI	GCNGC	1 cut(s)	473
GsaI	CCCAGC	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	506, 636
HapII	CCGG	4 cut(s)	38, 864, 1595, 1897
HgaI	GACGC	1 cut(s)	1654
HhaI	GCGC	3 cut(s)	142, 1059, 1742
Hin6I	GCGC	3 cut(s)	140, 1057, 1740
HinP1I	GCGC	3 cut(s)	140, 1057, 1740
HincII	GTYRAC	1 cut(s)	1106
HindII	GTYRAC	1 cut(s)	1106
HindIII	AAGCTT	2 cut(s)	564, 1070
HinfI	GANTC	7 cut(s)	5, 726, 789, 913, 941, 1538, 1708
HpaII	CCGG	4 cut(s)	38, 864, 1595, 1897
HphI	GGTGA	4 cut(s)	695, 1139, 1217, 1429
Hpy166II	GTNNAC	9 cut(s)	12, 124, 463, 702, 793, 845, 901, 1004, 1106
Hpy188I	TCNGA	4 cut(s)	118, 495, 1280, 1693
Hpy188III	TCNNGA	5 cut(s)	392, 880, 919, 1220, 1718
Hpy8I	GTNNAC	9 cut(s)	12, 124, 463, 702, 793, 845, 901, 1004, 1106
HpyAV	CCTTC	4 cut(s)	1034, 1221, 1855, 1909
HpyCH4III	ACNGT	9 cut(s)	367, 499, 748, 1001, 1379, 1548, 1747, 1783, 1814
HpyCH4IV	ACGT	2 cut(s)	483, 1150
HpyF10VI	GCNNNNNNNGC	6 cut(s)	216, 469, 553, 990, 1263, 1737
HpyF3I	CTNAG	8 cut(s)	115, 342, 492, 557, 945, 1052, 1470, 1928
HpySE526I	ACGT	2 cut(s)	483, 1150
HspAI	GCGC	3 cut(s)	140, 1057, 1740
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
LmnI	GCTCC	6 cut(s)	46, 272, 971, 1322, 1653, 1900
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	3 cut(s)	160, 1271, 1326
MaeI	CTAG	6 cut(s)	452, 1466, 1482, 1616, 1632, 1838
MaeII	ACGT	2 cut(s)	483, 1150
MaeIII	GTNAC	6 cut(s)	581, 1127, 1417, 1498, 1621, 1858
MalI	GATC	7 cut(s)	264, 651, 811, 1209, 1479, 1794, 1890
MboI	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
MboII	GAAGA	7 cut(s)	900, 1078, 1178, 1706, 1709, 1817, 1959
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	2 cut(s)	465, 704
MlyI	GAGTC	2 cut(s)	798, 1547
MnlI	CCTC	9 cut(s)	276, 546, 653, 828, 1465, 1566, 1573, 1940, 1973
Mph1103I	ATGCAT	1 cut(s)	1286
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	8 cut(s)	18, 60, 531, 678, 978, 1449, 1785, 1910
MslI	CAYNNNNRTG	5 cut(s)	117, 131, 574, 630, 906
MspCI	CTTAAG	2 cut(s)	17, 677
MspI	CCGG	4 cut(s)	38, 864, 1595, 1897
MspR9I	CCNGG	5 cut(s)	1238, 1404, 1595, 1596, 1898
Mva1269I	GAATGC	2 cut(s)	98, 1595
MvaI	CCWGG	2 cut(s)	1238, 1404
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	216, 469, 553, 990, 1263, 1737
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	1595, 1596, 1898
NdeI	CATATG	1 cut(s)	1253
NdeII	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
NgoMIV	GCCGGC	1 cut(s)	37
NheI	GCTAGC	1 cut(s)	1615
NlaIV	GGNNCC	3 cut(s)	42, 1324, 1526
NmuCI	GTSAC	4 cut(s)	581, 1127, 1417, 1498
NsiI	ATGCAT	1 cut(s)	1286
NspI	RCATGY	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	630
PagI	TCATGA	3 cut(s)	879, 1219, 1717
PctI	GAATGC	2 cut(s)	98, 1595
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	5 cut(s)	5, 726, 913, 941, 1708
PflMI	CCANNNNNTGG	1 cut(s)	1409
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	2 cut(s)	797, 1546
PpsI	GAGTC	2 cut(s)	797, 1546
Ppu21I	YACGTR	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	1910
PsiI	TTATAA	1 cut(s)	875
Psp6I	CCWGG	2 cut(s)	1236, 1402
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	1236, 1402
PspN4I	GGNNCC	3 cut(s)	42, 1324, 1526
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	2 cut(s)	486, 950
RsaNI	GTAC	2 cut(s)	485, 949
RseI	CAYNNNNRTG	5 cut(s)	117, 131, 574, 630, 906
SalI	GTCGAC	1 cut(s)	1104
SaqAI	TTAA	8 cut(s)	18, 60, 531, 678, 978, 1449, 1785, 1910
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	7 cut(s)	262, 649, 809, 1207, 1477, 1792, 1888
SchI	GAGTC	2 cut(s)	798, 1547
ScrFI	CCNGG	5 cut(s)	1238, 1404, 1595, 1596, 1898
SduI	GDGCHC	2 cut(s)	465, 704
SfaNI	GCATC	3 cut(s)	160, 1271, 1326
SfcI	CTRYAG	3 cut(s)	821, 1267, 1735
SmaI	CCCGGG	1 cut(s)	1596
SmiMI	CAYNNNNRTG	5 cut(s)	117, 131, 574, 630, 906
SmlI	CTYRAG	4 cut(s)	17, 644, 677, 1198
SmoI	CTYRAG	4 cut(s)	17, 644, 677, 1198
SnaBI	TACGTA	1 cut(s)	484
SsiI	CCGC	2 cut(s)	984, 1619
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	6 cut(s)	452, 1466, 1482, 1616, 1632, 1838
StyD4I	CCNGG	5 cut(s)	1236, 1402, 1593, 1594, 1896
StyI	CCWWGG	1 cut(s)	1481
TaaI	ACNGT	9 cut(s)	367, 499, 748, 1001, 1379, 1548, 1747, 1783, 1814
TaiI	ACGT	2 cut(s)	486, 1153
TaqI	TCGA	5 cut(s)	49, 1105, 1439, 1507, 1566
TatI	WGTACW	1 cut(s)	948
TfiI	GAWTC	5 cut(s)	5, 726, 913, 941, 1708
Tru1I	TTAA	8 cut(s)	18, 60, 531, 678, 978, 1449, 1785, 1910
Tru9I	TTAA	8 cut(s)	18, 60, 531, 678, 978, 1449, 1785, 1910
TscAI	CASTG	5 cut(s)	586, 1096, 1507, 1632, 1819
TseFI	GTSAC	4 cut(s)	581, 1127, 1417, 1498
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	4 cut(s)	581, 1127, 1417, 1498
TspGWI	ACGGA	3 cut(s)	13, 822, 984
TspMI	CCCGGG	1 cut(s)	1594
TspRI	CASTG	5 cut(s)	586, 1096, 1507, 1632, 1819
Van91I	CCANNNNNTGG	1 cut(s)	1409
Vha464I	CTTAAG	2 cut(s)	17, 677
VneI	GTGCAC	2 cut(s)	461, 700
VspI	ATTAAT	1 cut(s)	1910
XagI	CCTNNNNNAGG	1 cut(s)	1235
XapI	RAATTY	4 cut(s)	164, 693, 1010, 1292
XceI	RCATGY	1 cut(s)	57
XmaI	CCCGGG	1 cut(s)	1594
XmaJI	CCTAGG	1 cut(s)	1481
XmiI	GTMKAC	4 cut(s)	11, 792, 844, 1105
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	6 cut(s)	452, 1466, 1482, 1616, 1632, 1838
Zsp2I	ATGCAT	1 cut(s)	1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.