Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

3408417 .. 3416849

Gene Structure 8433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGGAGAAATTCGAGGTTCAGGTTTTGAGATCTGCGATTCTCTTAGTATTTTACTTCGATTTTCAAAGATTTGAGGACGGATTTGAAGAGAATGAGCAGTTTTGTGTGCTTTGGTATTACAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGTACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATAGAACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGGACCTTGGTGAGATATTTTGGAGTGGCTCAAGGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGCTATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTTAACTAGAAAAGGTGCGCAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGTAATCTCATTGAAAGTCTTTTCCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGTATATATCTTGTCTTTACATCAAGGCTCTATTTGAAACAAATGAGCCAGGTCAAACAAGAAAAATTCTTCTGGTGTCTACATGCATGTCAGCACTTTTAGAAACTTTTGTCTTCGAATTCGTTAATCCTGTTCTTATTGGATATCAGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAAACACTAGAACCTGGGAGGCTGATGACGAAGTACTACTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGACAAAGGGAAGCGAAAAAGAAATTGCCAGATGCATGAAAGAATTTTTATTTACCAAAAGAATTACAGAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGATAATTGAGATGGTCACTGATCGAAAATACCCATATGGGAACCACATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGCCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGGCCCAGTTTCAAGCTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCGACAAAGTTCATGAAGATGAGATTGCTGCCAAATTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCATCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCAAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACAACATCTTTCTAGAGAAACAATATTTGAGCACATACGCACAAAAGCAAAGAATTTTCCGGTGATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTGTATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTATCAGAGATACTGAATGTGATAGGGGTTGCTCTCCGGAAGCTCCTGCAACCCTCATGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

981

Amino Acids

112.2

Weight (kDa)

6.11

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	42 - 231	6.4e-30	DEAD/DEAH box helicase
ResIII	PF04851	53 - 188	3.6e-08	Type III restriction enzyme, res subunit
Sec63	PF02889	553 - 619	2.5e-14	Sec63 Brl domain
Sec63	PF02889	636 - 784	1.2e-06	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1735
Acc16I	TGCGCA	1 cut(s)	858
Acc36I	ACCTGC	1 cut(s)	1735
AccB1I	GGYRCC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	2030
AccBSI	CCGCTC	1 cut(s)	827
AccI	GTMKAC	3 cut(s)	1182, 1292, 1849
AccII	CGCG	2 cut(s)	478, 486
AccIII	TCCGGA	1 cut(s)	2914
AciI	CCGC	3 cut(s)	478, 825, 2240
AclWI	GGATC	4 cut(s)	370, 554, 1047, 2093
AcuI	CTGAAG	3 cut(s)	2252, 2403, 2655
AfaI	GTAC	3 cut(s)	349, 1587, 1685
AfeI	AGCGCT	1 cut(s)	637
AfiI	CCNNNNNNNGG	7 cut(s)	281, 316, 734, 1774, 2030, 2512, 2603
AflII	CTTAAG	1 cut(s)	1067
AjnI	CCWGG	5 cut(s)	416, 1261, 1663, 2023, 2325
AleI	CACNNNNGTG	2 cut(s)	1020, 2484
AloI	GAACNNNNNNTCC	4 cut(s)	1347, 1379, 2598, 2630
Alw21I	GWGCWC	5 cut(s)	390, 1094, 1506, 2578, 2724
Alw26I	GTCTC	4 cut(s)	1471, 2075, 2166, 2175
Alw44I	GTGCAC	1 cut(s)	1090
AlwI	GGATC	4 cut(s)	370, 554, 1047, 2093
Ama87I	CYCGRG	1 cut(s)	366
Aor13HI	TCCGGA	1 cut(s)	2914
Aor51HI	AGCGCT	1 cut(s)	637
AoxI	GGCC	5 cut(s)	764, 894, 1024, 2218, 2351
ApaLI	GTGCAC	1 cut(s)	1090
ApeKI	GCWGC	4 cut(s)	866, 1609, 1737, 2426
Asp700I	GAANNNNTTC	1 cut(s)	141
AspA2I	CCTAGG	1 cut(s)	2102
AspLEI	GCGC	4 cut(s)	187, 638, 859, 1803
AspS9I	GGNCC	4 cut(s)	691, 2218, 2352, 2594
AsuC2I	CCSGG	1 cut(s)	2216
AsuHPI	GGTGA	7 cut(s)	382, 710, 1085, 1883, 2050, 2254, 2764
AsuII	TTCGAA	1 cut(s)	1329
AsuNHI	GCTAGC	1 cut(s)	2236
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	2 cut(s)	691, 2594
AvrII	CCTAGG	1 cut(s)	2102
BaeGI	GKGCMC	1 cut(s)	1094
BanI	GGYRCC	1 cut(s)	724
BanII	GRGCYC	2 cut(s)	390, 2553
BauI	CACGAG	2 cut(s)	564, 2577
BbsI	GAAGAC	2 cut(s)	1318, 2382
Bbv12I	GWGCWC	5 cut(s)	390, 1094, 1506, 2578, 2724
BbvCI	CCTCAGC	2 cut(s)	1773, 2091
BbvI	GCAGC	4 cut(s)	878, 1621, 1749, 2413
BceAI	ACGGC	2 cut(s)	1752, 2834
BcgI	CGANNNNNNTGC	2 cut(s)	2040, 2074
BciT130I	CCWGG	5 cut(s)	418, 1263, 1665, 2025, 2327
BciVI	GTATCC	1 cut(s)	1782
BclI	TGATCA	1 cut(s)	2754
BcnI	CCSGG	1 cut(s)	2216
BcoDI	GTCTC	4 cut(s)	1471, 2075, 2166, 2175
BfmI	CTRYAG	3 cut(s)	1211, 1443, 1735
BfoI	RGCGCY	2 cut(s)	188, 639
BfrI	CTTAAG	1 cut(s)	1067
BfuAI	ACCTGC	1 cut(s)	1735
BfuI	GTATCC	1 cut(s)	1782
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	4 cut(s)	867, 1610, 1738, 2427
BlnI	CCTAGG	1 cut(s)	2102
BlsI	GCNGC	4 cut(s)	868, 1611, 1739, 2428
BmcAI	AGTACT	1 cut(s)	1685
Bme1390I	CCNGG	6 cut(s)	418, 1263, 1665, 2025, 2216, 2327
Bme18I	GGWCC	2 cut(s)	691, 2594
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	4 cut(s)	691, 2218, 2352, 2594
BmiI	GGNNCC	4 cut(s)	726, 1945, 2147, 2219
BmrFI	CCNGG	6 cut(s)	418, 1263, 1665, 2025, 2216, 2327
BmrI	ACTGGG	1 cut(s)	2349
BmsI	GCATC	5 cut(s)	457, 1621, 1738, 1893, 1947
BmtI	GCTAGC	1 cut(s)	2240
BmuI	ACTGGG	1 cut(s)	2349
BpiI	GAAGAC	2 cut(s)	1318, 2382
Bpu10I	CCTNAGC	4 cut(s)	947, 1773, 1796, 2091
Bpu14I	TTCGAA	1 cut(s)	1329
BpuEI	CTTGAG	2 cut(s)	703, 1019
BpuMI	CCSGG	1 cut(s)	2216
BsaAI	YACGTR	1 cut(s)	2486
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaJI	CCNNGG	8 cut(s)	694, 733, 1664, 2024, 2102, 2215, 2221, 2553
BsaWI	WCCGGW	4 cut(s)	392, 2596, 2749, 2914
BsaXI	ACNNNNNCTCC	6 cut(s)	2253, 2283, 2598, 2628, 2768, 2798
Bsc4I	CCNNNNNNNGG	7 cut(s)	281, 316, 734, 1774, 2030, 2512, 2603
Bse1I	ACTGG	2 cut(s)	196, 2355
Bse3DI	GCAATG	1 cut(s)	1810
Bse8I	GATNNNNATC	1 cut(s)	1044
BseAI	TCCGGA	1 cut(s)	2914
BseBI	CCWGG	5 cut(s)	418, 1263, 1665, 2025, 2327
BseDI	CCNNGG	8 cut(s)	694, 733, 1664, 2024, 2102, 2215, 2221, 2553
BseGI	GGATG	5 cut(s)	265, 499, 1397, 1501, 1999
BseJI	GATNNNNATC	1 cut(s)	1044
BseLI	CCNNNNNNNGG	7 cut(s)	281, 316, 734, 1774, 2030, 2512, 2603
BseMI	GCAATG	1 cut(s)	1810
BseMII	CTCAG	8 cut(s)	174, 246, 447, 896, 1764, 1810, 2082, 2772
BseNI	ACTGG	2 cut(s)	196, 2355
BseRI	GAGGAG	2 cut(s)	1956, 2789
BseSI	GKGCMC	1 cut(s)	1094
BseXI	GCAGC	4 cut(s)	878, 1621, 1749, 2413
Bsh1236I	CGCG	2 cut(s)	478, 486
BshFI	GGCC	5 cut(s)	766, 896, 1026, 2220, 2353
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	5 cut(s)	390, 1094, 1506, 2578, 2724
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	5 cut(s)	393, 2215, 2597, 2750, 2915
BslI	CCNNNNNNNGG	7 cut(s)	281, 316, 734, 1774, 2030, 2512, 2603
BsmAI	GTCTC	4 cut(s)	1471, 2075, 2166, 2175
BsmI	GAATGC	2 cut(s)	143, 2216
BsnI	GGCC	5 cut(s)	766, 896, 1026, 2220, 2353
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	1329
Bsp1286I	GDGCHC	6 cut(s)	390, 1094, 1506, 2553, 2578, 2724
Bsp13I	TCCGGA	1 cut(s)	2914
Bsp1407I	TGTACA	1 cut(s)	1585
Bsp143I	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
BspACI	CCGC	3 cut(s)	478, 825, 2240
BspANI	GGCC	5 cut(s)	766, 896, 1026, 2220, 2353
BspCNI	CTCAG	8 cut(s)	173, 247, 448, 895, 1765, 1809, 2083, 2773
BspEI	TCCGGA	1 cut(s)	2914
BspFNI	CGCG	2 cut(s)	478, 486
BspHI	TCATGA	2 cut(s)	2338, 2410
BspLI	GGNNCC	4 cut(s)	726, 1945, 2147, 2219
BspMAI	CTGCAG	2 cut(s)	1447, 1739
BspMI	ACCTGC	1 cut(s)	1735
BspOI	GCTAGC	1 cut(s)	2240
BspPI	GGATC	4 cut(s)	370, 554, 1047, 2093
BspQI	GCTCTTC	1 cut(s)	1758
BspT104I	TTCGAA	1 cut(s)	1329
BspT107I	GGYRCC	1 cut(s)	724
BspTI	CTTAAG	1 cut(s)	1067
BsrBI	CCGCTC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	1810
BsrGI	TGTACA	1 cut(s)	1585
BsrI	ACTGG	2 cut(s)	196, 2355
BssECI	CCNNGG	8 cut(s)	694, 733, 1664, 2024, 2102, 2215, 2221, 2553
BssMI	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
BssSI	CACGAG	2 cut(s)	564, 2577
BssT1I	CCWWGG	5 cut(s)	694, 733, 2102, 2221, 2553
Bst2BI	CACGAG	2 cut(s)	564, 2577
Bst2UI	CCWGG	5 cut(s)	418, 1263, 1665, 2025, 2327
Bst6I	CTCTTC	2 cut(s)	81, 1758
BstAFI	CTTAAG	1 cut(s)	1067
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	1585
BstBAI	YACGTR	1 cut(s)	2486
BstBI	TTCGAA	1 cut(s)	1329
BstC8I	GCNNGC	2 cut(s)	609, 2238
BstENI	CCTNNNNNAGG	1 cut(s)	732
BstF5I	GGATG	5 cut(s)	265, 499, 1397, 1501, 1999
BstFNI	CGCG	2 cut(s)	478, 486
BstH2I	RGCGCY	2 cut(s)	188, 639
BstHHI	GCGC	4 cut(s)	187, 638, 859, 1803
BstKTI	GATC	9 cut(s)	32, 365, 562, 1042, 1202, 1555, 2101, 2128, 2757
BstMAI	GTCTC	4 cut(s)	1471, 2075, 2166, 2175
BstMBI	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
BstMWI	GCNNNNNNNGC	6 cut(s)	378, 513, 668, 772, 863, 943
BstNI	CCWGG	5 cut(s)	418, 1263, 1665, 2025, 2327
BstNSI	RCATGY	2 cut(s)	1299, 1303
BstSCI	CCNGG	6 cut(s)	416, 1261, 1663, 2023, 2214, 2325
BstSFI	CTRYAG	3 cut(s)	1211, 1443, 1735
BstSLI	GKGCMC	1 cut(s)	1094
BstUI	CGCG	2 cut(s)	478, 486
BstV1I	GCAGC	4 cut(s)	878, 1621, 1749, 2413
BstV2I	GAAGAC	2 cut(s)	1318, 2382
BstX2I	RGATCY	2 cut(s)	29, 362
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	2 cut(s)	29, 362
BsuI	GTATCC	1 cut(s)	1782
BsuRI	GGCC	5 cut(s)	766, 896, 1026, 2220, 2353
BtsCI	GGATG	5 cut(s)	265, 499, 1397, 1501, 1999
BtsI	GCAGTG	2 cut(s)	976, 1205
BtsIMutI	CAGTG	5 cut(s)	976, 1205, 1833, 2121, 2246
BveI	ACCTGC	1 cut(s)	1735
Cac8I	GCNNGC	2 cut(s)	609, 2238
CciI	TCATGA	2 cut(s)	2338, 2410
CfoI	GCGC	4 cut(s)	187, 638, 859, 1803
Cfr13I	GGNCC	4 cut(s)	691, 2218, 2352, 2594
CsiI	ACCWGGT	1 cut(s)	2325
Csp6I	GTAC	3 cut(s)	348, 1586, 1684
CviQI	GTAC	3 cut(s)	348, 1586, 1684
DpnI	GATC	9 cut(s)	31, 364, 561, 1041, 1201, 1554, 2100, 2127, 2756
DpnII	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
Eam1104I	CTCTTC	2 cut(s)	81, 1758
EarI	CTCTTC	2 cut(s)	81, 1758
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	5 cut(s)	694, 733, 2102, 2221, 2553
Eco147I	AGGCCT	1 cut(s)	766
Eco24I	GRGCYC	2 cut(s)	390, 2553
Eco32I	GATATC	1 cut(s)	1358
Eco47I	GGWCC	2 cut(s)	691, 2594
Eco47III	AGCGCT	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	3 cut(s)	2252, 2403, 2655
Eco88I	CYCGRG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	1331
EcoRII	CCWGG	5 cut(s)	416, 1261, 1663, 2023, 2325
EcoRV	GATATC	1 cut(s)	1358
EcoT14I	CCWWGG	5 cut(s)	694, 733, 2102, 2221, 2553
EcoT22I	ATGCAT	2 cut(s)	1301, 1908
EcoT38I	GRGCYC	2 cut(s)	390, 2553
ErhI	CCWWGG	5 cut(s)	694, 733, 2102, 2221, 2553
FalI	AAGNNNNNCTT	6 cut(s)	940, 972, 1673, 1705, 1737, 1769
FauNDI	CATATG	2 cut(s)	1569, 2140
FbaI	TGATCA	1 cut(s)	2754
FblI	GTMKAC	3 cut(s)	1182, 1292, 1849
Fnu4HI	GCNGC	4 cut(s)	867, 1610, 1738, 2427
FokI	GGATG	5 cut(s)	272, 506, 1404, 1508, 2006
FriOI	GRGCYC	2 cut(s)	390, 2553
Fsp4HI	GCNGC	4 cut(s)	867, 1610, 1738, 2427
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	4 cut(s)	186, 637, 858, 1802
GluI	GCNGC	4 cut(s)	867, 1610, 1738, 2427
HaeII	RGCGCY	2 cut(s)	188, 639
HaeIII	GGCC	5 cut(s)	766, 896, 1026, 2220, 2353
HapII	CCGG	5 cut(s)	393, 2215, 2597, 2750, 2915
HhaI	GCGC	4 cut(s)	187, 638, 859, 1803
Hin6I	GCGC	4 cut(s)	185, 636, 857, 1801
HinP1I	GCGC	4 cut(s)	185, 636, 857, 1801
HincII	GTYRAC	1 cut(s)	1850
HindII	GTYRAC	1 cut(s)	1850
HindIII	AAGCTT	4 cut(s)	954, 1814, 2363, 2588
HpaII	CCGG	5 cut(s)	393, 2215, 2597, 2750, 2915
HphI	GGTGA	7 cut(s)	382, 710, 1085, 1883, 2050, 2254, 2764
Hpy166II	GTNNAC	9 cut(s)	169, 270, 425, 1092, 1183, 1293, 1366, 1586, 1850
Hpy8I	GTNNAC	9 cut(s)	169, 270, 425, 1092, 1183, 1293, 1366, 1586, 1850
HpyAV	CCTTC	2 cut(s)	328, 2041
HpyCH4IV	ACGT	2 cut(s)	2485, 2572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	378, 513, 668, 772, 863, 943
HpySE526I	ACGT	2 cut(s)	2485, 2572
HspAI	GCGC	4 cut(s)	185, 636, 857, 1801
Kpn2I	TCCGGA	1 cut(s)	2914
Ksp22I	TGATCA	1 cut(s)	2754
Kzo9I	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
LguI	GCTCTTC	1 cut(s)	1758
LmnI	GCTCC	5 cut(s)	385, 569, 1432, 1943, 2926
Lsp1109I	GCAGC	4 cut(s)	878, 1621, 1749, 2413
LweI	GCATC	5 cut(s)	457, 1621, 1738, 1893, 1947
MabI	ACCWGGT	1 cut(s)	2325
MaeII	ACGT	2 cut(s)	2485, 2572
MaeIII	GTNAC	7 cut(s)	472, 971, 1871, 2038, 2119, 2242, 2455
MalI	GATC	9 cut(s)	31, 364, 561, 1041, 1201, 1554, 2100, 2127, 2756
MbiI	CCGCTC	1 cut(s)	827
MboI	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
MfeI	CAATTG	1 cut(s)	1412
MflI	RGATCY	2 cut(s)	29, 362
MhlI	GDGCHC	6 cut(s)	390, 1094, 1506, 2553, 2578, 2724
MlyI	GAGTC	4 cut(s)	1188, 2168, 2372, 2792
Mph1103I	ATGCAT	2 cut(s)	1301, 1908
MroI	TCCGGA	1 cut(s)	2914
MroXI	GAANNNNTTC	1 cut(s)	141
MslI	CAYNNNNRTG	7 cut(s)	162, 176, 964, 1020, 1371, 2415, 2484
MspCI	CTTAAG	1 cut(s)	1067
MspI	CCGG	5 cut(s)	393, 2215, 2597, 2750, 2915
MspR9I	CCNGG	6 cut(s)	418, 1263, 1665, 2025, 2216, 2327
MunI	CAATTG	1 cut(s)	1412
Mva1269I	GAATGC	2 cut(s)	143, 2216
MvaI	CCWGG	5 cut(s)	418, 1263, 1665, 2025, 2327
MvnI	CGCG	2 cut(s)	478, 486
MwoI	GCNNNNNNNGC	6 cut(s)	378, 513, 668, 772, 863, 943
NciI	CCSGG	1 cut(s)	2216
NdeI	CATATG	2 cut(s)	1569, 2140
NdeII	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
NheI	GCTAGC	1 cut(s)	2236
NlaIV	GGNNCC	4 cut(s)	726, 1945, 2147, 2219
NmuCI	GTSAC	6 cut(s)	971, 1871, 2038, 2119, 2242, 2455
NsbI	TGCGCA	1 cut(s)	858
NsiI	ATGCAT	2 cut(s)	1301, 1908
NspI	RCATGY	2 cut(s)	1299, 1303
NspV	TTCGAA	1 cut(s)	1329
OliI	CACNNNNGTG	2 cut(s)	1020, 2484
PagI	TCATGA	2 cut(s)	2338, 2410
PaqCI	CACCTGC	1 cut(s)	1735
PceI	AGGCCT	1 cut(s)	766
PciSI	GCTCTTC	1 cut(s)	1758
PctI	GAATGC	2 cut(s)	143, 2216
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	6 cut(s)	37, 246, 404, 1116, 1378, 1406
PflMI	CCANNNNNTGG	1 cut(s)	2030
PkrI	GCNGC	4 cut(s)	868, 1611, 1739, 2428
PleI	GAGTC	4 cut(s)	1187, 2167, 2372, 2791
PpsI	GAGTC	4 cut(s)	1187, 2167, 2372, 2791
Ppu21I	YACGTR	1 cut(s)	2486
PpuMI	RGGWCCY	1 cut(s)	691
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	5 cut(s)	416, 1261, 1663, 2023, 2325
PspGI	CCWGG	5 cut(s)	416, 1261, 1663, 2023, 2325
PspN4I	GGNNCC	4 cut(s)	726, 1945, 2147, 2219
PspPI	GGNCC	4 cut(s)	691, 2218, 2352, 2594
PspPPI	RGGWCCY	1 cut(s)	691
PstI	CTGCAG	2 cut(s)	1447, 1739
PsuI	RGATCY	2 cut(s)	29, 362
RsaI	GTAC	3 cut(s)	349, 1587, 1685
RsaNI	GTAC	3 cut(s)	348, 1586, 1684
RseI	CAYNNNNRTG	7 cut(s)	162, 176, 964, 1020, 1371, 2415, 2484
SacI	GAGCTC	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	1848
SapI	GCTCTTC	1 cut(s)	1758
SatI	GCNGC	4 cut(s)	867, 1610, 1738, 2427
Sau3AI	GATC	9 cut(s)	29, 362, 559, 1039, 1199, 1552, 2098, 2125, 2754
Sau96I	GGNCC	4 cut(s)	691, 2218, 2352, 2594
ScaI	AGTACT	1 cut(s)	1685
SchI	GAGTC	4 cut(s)	1188, 2168, 2372, 2792
ScrFI	CCNGG	6 cut(s)	418, 1263, 1665, 2025, 2216, 2327
SduI	GDGCHC	6 cut(s)	390, 1094, 1506, 2553, 2578, 2724
SexAI	ACCWGGT	1 cut(s)	2325
SfaNI	GCATC	5 cut(s)	457, 1621, 1738, 1893, 1947
SfcI	CTRYAG	3 cut(s)	1211, 1443, 1735
SfuI	TTCGAA	1 cut(s)	1329
SinI	GGWCC	2 cut(s)	691, 2594
SmiMI	CAYNNNNRTG	7 cut(s)	162, 176, 964, 1020, 1371, 2415, 2484
SmlI	CTYRAG	3 cut(s)	718, 1034, 1067
SmoI	CTYRAG	3 cut(s)	718, 1034, 1067
SseBI	AGGCCT	1 cut(s)	766
SsiI	CCGC	3 cut(s)	478, 825, 2240
SspI	AATATT	4 cut(s)	685, 809, 2715, 2942
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	766
StyD4I	CCNGG	6 cut(s)	416, 1261, 1663, 2023, 2214, 2325
StyI	CCWWGG	5 cut(s)	694, 733, 2102, 2221, 2553
TaiI	ACGT	2 cut(s)	2488, 2575
TaqI	TCGA	8 cut(s)	12, 57, 1329, 1489, 1849, 1955, 2060, 2128
TaqII	GACCGA	1 cut(s)	1212
TatI	WGTACW	2 cut(s)	1585, 1683
TfiI	GAWTC	6 cut(s)	37, 246, 404, 1116, 1378, 1406
TscAI	CASTG	5 cut(s)	976, 1212, 1840, 2128, 2253
TseFI	GTSAC	6 cut(s)	971, 1871, 2038, 2119, 2242, 2455
TseI	GCWGC	4 cut(s)	866, 1609, 1737, 2426
Tsp45I	GTSAC	6 cut(s)	971, 1871, 2038, 2119, 2242, 2455
TspGWI	ACGGA	2 cut(s)	93, 1445
TspRI	CASTG	5 cut(s)	976, 1212, 1840, 2128, 2253
Van91I	CCANNNNNTGG	1 cut(s)	2030
Vha464I	CTTAAG	1 cut(s)	1067
VneI	GTGCAC	1 cut(s)	1090
VpaK11BI	GGWCC	2 cut(s)	691, 2594
XagI	CCTNNNNNAGG	1 cut(s)	732
XbaI	TCTAGA	2 cut(s)	2368, 2702
XceI	RCATGY	2 cut(s)	1299, 1303
XmaJI	CCTAGG	1 cut(s)	2102
XmiI	GTMKAC	3 cut(s)	1182, 1292, 1849
XmnI	GAANNNNTTC	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	1685
Zsp2I	ATGCAT	2 cut(s)	1301, 1908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.