Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

57436442 .. 57441411

Gene Structure 4970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0489100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

ATGAATATGATGCGCCAGCGTCTGAAGAAGCAAGCCAAGACTAGTCTACTTTTCCTGGCTCGATCTTTGAGTTCCTCCTCGTCCCACTCATTTGGCTTTGCTCCCCAAAACTACTACTCCATCCCACCATCCAAGACTCACCTCTATTCATCCTTCTTTTGCACCCTTATACACCTCTACTTGGCCTGCGGCAGATTCTCCGATGCTTCCCACGCCTTCTTCTCTATGCGAAGTCATGGCCTCGTTCCTTTTCTGCCTCTTTGGAATCGGCTTCTTCACCATTTCAGTGCCTCTGGTTTGTCTTCTCAGGTATCCCTTCTCTACTCTGAGATGCTCTCCTGTGGGGTTGTGCCTAGTGTTTTCACCCGCAACATATTGATTCACTCTTTCTGCAAAGTCGGAAACTTGAGTCTGGCACTGCATTTCTTAAGAAATACTCAAATTGATACTGTTTCCTATAACACTCTCATTTGGGGCTTCTCCCAACAAGGAATGCCTTATCAAGCTTTTGGATTTTTGTCTCAAATGCTGCGGAGGGCTATATCCATAGATTCTTATACTTGCAATTTACTAGTTAACGGGTTTTGCCGAATTGGCCTAGTAGAGTATGCAGAATGGGTTATGGATAATTTGGTCAGTGGTGGAATTACTCAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGATATTGCAAAGCTGGACAAGTTAGCCGTGCACTCGAGTTAATTGAGAGAATGGAGAGGGATGGTCTTCTTCCTGATACTGTTACTCTTGTTCATGGGTTTTGTCACGTGGGGGATTTTGTAAATGCCAAGAGTACAATACATAACATTTTGACATCTCAAGGAAACCAAGATGGCCCTCATAATGAGAACTGGACTGGCAGTATGAATTTTAGACCAAATGTTATAACTCTCACCACTCTCATTAGCGCTTACAGTAAGCATCAAGGACTTGAAGAGGCTCTTTCTCTGTATGAGGAAATGGTTATGAATGGCATTTTCCCGGATGTTGTTACTTATAGCTCCATTATATATGGTCTTTGCAAGCATGGGAGGCTGTCAGAAGCCAAACTGCTCTTAAGGGAGATGGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTTCACTACCCTCGTGGATTCTTTGTTTAAGGCAGGCTCTTCTAGGGAAGCTCTCATCCTTCAAGGCCAAATGGTGGTTCGCGGCCTAGTTTTTGATTTAGTAATTTGCACTGCTTTAATGGCTGGACTGTTTAAAGTTGGAAAAGTCGGCGAGGCTAAGGACCTGTTTCGAACAATTTCAAAGCTCAGCTTTGTTCCAAACTGTATCACCTATTCTGCTTTGATAAATGGGCATTGCAATTCAGGAGACATGGGCGGTGCAGAAGCAATACTCAGAGAAATGGAAGATAAACATGTTTTCCCCAATATTATCACTTATTCTTCTCTCATAAAGGGTTATATGAAGAAAGGAATGATTGGTGATGCTATTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTATTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTTAAGGCAGGTAAACAAGAATTTGCCCTTGATCTCTACAATGAAATGAAAATTAGAGGATTGGAGGACAACAGTTTCATATTTGATGCTTTTGTGAACAACATGAAAAAGTGCAGAAGGATGGAACAAGCTGAGGGATTAATTATGGATATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACATCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTTAACTTGTTCCAAGAAATGGCGGAGAAAAATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTCAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGGCTCCCGACTGTGTCACGTACAATACCCTGATTATTGCATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTGAACTTTGGAATGAGATGAAGGGTCAAGGGTTCATTTTAAATTCATTCACTTGTAACATTCTGATAGGAGGGCTTTGTGAAGAAGATAAGATTGAAAAAGCAATGGATGTCTTAAATGAAATGGTGGCTGTGGGTTCTCTCCCTACCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCTGATCCAATTTTGCAAATGCATCAGAAGCTTGTAAGTATGGGGCTTGACCTCAATCATGATGTTTATAATAATCTCATCACTATCTTATGTAGGCTGGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGACTGGAAGAGGATTTTTAGCTGATACTATTACTTACAATGCCCTTATACGTGGATATGGTATGAGCAGCCATCTAAAAAGGGCTTTTGCTACACACTCAAAGATGCTGGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGATTGATGACAAAGGCAGATGAATTATTTAGTGAAATGAAGAATAGAGGCTTTCTTCCTAATGCTTCCACATATGATATATTGGTTTCCGGCTATGGTAAGATTGGAAATAAGAAGGAAGCCATAAGGCGTTATTGTGAAATGGTAAGCAAAAGTTTTGTTCCCAATACTGGCACCTACAATGTGCTTATTAGTGATTTTGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGGCAAGGGGTGCCTGTCCTAATTCTTCAACATACAGCATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTGCGAAAGTCATACCGAGCTGAGGCAAAGAGATTATTAGCCGAGATGAATGAGAAAGGGTATGTTCCAGGTGGAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGGCTGATGCTCAGAGGCTATTAAAGGAACTGTACATCAACAAGAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

1011

Amino Acids

112.54

Weight (kDa)

8.78

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	88 - 132	3.6e-07	PPR repeat family
PPR_2	PF13041	149 - 197	8.4e-13	PPR repeat family
PPR_3	PF13812	207 - 257	6.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	215 - 247	1.9e-09	PPR repeat
PPR_2	PF13041	219 - 259	3.3e-11	PPR repeat family
PPR	PF01535	223 - 251	7.5e-08	PPR repeat
PPR_3	PF13812	298 - 345	6.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	301 - 350	6.1e-16	PPR repeat family
PPR	PF01535	304 - 334	4.3e-06	PPR repeat
PPR_1	PF12854	332 - 365	3.3e-13	PPR repeat
PPR_2	PF13041	336 - 385	2.9e-14	PPR repeat family
PPR	PF01535	339 - 369	6.5e-08	PPR repeat
PPR_2	PF13041	407 - 455	1.7e-10	PPR repeat family
PPR_long	PF17177	426 - 530	5.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	431 - 488	1.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	439 - 470	5.5e-09	PPR repeat
PPR_2	PF13041	444 - 488	7.3e-12	PPR repeat family
PPR_1	PF12854	473 - 505	6.6e-08	PPR repeat
PPR_2	PF13041	476 - 525	4.2e-14	PPR repeat family
PPR	PF01535	479 - 509	2.1e-06	PPR repeat
PPR_2	PF13041	511 - 548	4.2e-07	PPR repeat family
PPR_3	PF13812	571 - 626	4.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	582 - 629	3.2e-10	PPR repeat family
PPR_long	PF17177	600 - 748	3.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	617 - 664	1.6e-10	PPR repeat family
PPR_1	PF12854	647 - 679	7.7e-13	PPR repeat
PPR_2	PF13041	650 - 698	9.5e-17	PPR repeat family
PPR	PF01535	653 - 683	4.6e-09	PPR repeat
PPR_1	PF12854	682 - 714	5.8e-06	PPR repeat
PPR_2	PF13041	686 - 731	1.9e-10	PPR repeat family
PPR_long	PF17177	729 - 877	2.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	759 - 802	2.4e-09	PPR repeat family
TPR_24	PF23276	762 - 887	5.1e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	779 - 837	1.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	791 - 837	4.4e-11	PPR repeat family
PPR_2	PF13041	825 - 873	2.1e-13	PPR repeat family
PPR_3	PF13812	849 - 906	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	863 - 909	3.2e-09	PPR repeat family
PPR_2	PF13041	895 - 944	8.2e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	911, 2280
Acc36I	ACCTGC	1 cut(s)	1568
AccB1I	GGYRCC	2 cut(s)	2693, 2780
AccB7I	CCANNNNNTGG	2 cut(s)	1198, 1825
AccI	GTMKAC	1 cut(s)	46
AccII	CGCG	1 cut(s)	1206
AciI	CCGC	7 cut(s)	189, 367, 532, 1206, 1380, 1829, 1888
AclWI	GGATC	1 cut(s)	2210
AcsI	RAATTY	3 cut(s)	892, 1589, 2056
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	793
AfaI	GTAC	5 cut(s)	820, 1964, 2489, 2941, 3017
AfeI	AGCGCT	1 cut(s)	934
AfiI	CCNNNNNNNGG	6 cut(s)	181, 1198, 1825, 2690, 2749, 2884
AflII	CTTAAG	2 cut(s)	427, 1081
AflIII	ACRYGT	1 cut(s)	1417
AgsI	TTSAA	8 cut(s)	959, 1187, 1305, 2018, 2111, 2199, 2483, 2799
AhlI	ACTAGT	2 cut(s)	41, 571
AjnI	CCWGG	4 cut(s)	54, 2318, 2929, 2974
AjuI	GAANNNNNNNTTGG	2 cut(s)	1185, 1217
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	3 cut(s)	525, 1126, 1365
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	1 cut(s)	2210
AlwNI	CAGNNNCTG	2 cut(s)	22, 2519
Ama87I	CYCGRG	1 cut(s)	719
Aor51HI	AGCGCT	1 cut(s)	934
AoxI	GGCC	7 cut(s)	183, 238, 595, 859, 1189, 1207, 2325
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	3 cut(s)	529, 2415, 2842
ApoI	RAATTY	3 cut(s)	892, 1589, 2056
AseI	ATTAAT	1 cut(s)	1709
Asp700I	GAANNNNTTC	1 cut(s)	1300
AspLEI	GCGC	2 cut(s)	15, 935
AspS9I	GGNCC	3 cut(s)	860, 1285, 2506
AsuC2I	CCSGG	1 cut(s)	1007
AsuHPI	GGTGA	7 cut(s)	131, 269, 355, 910, 1324, 1496, 2009
AsuII	TTCGAA	1 cut(s)	1294
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	2 cut(s)	1285, 2506
BaeGI	GKGCMC	1 cut(s)	718
BanI	GGYRCC	2 cut(s)	2693, 2780
BauI	CACGAG	1 cut(s)	1136
BbrPI	CACGTG	1 cut(s)	793
BbsI	GAAGAC	2 cut(s)	294, 743
Bbv12I	GWGCWC	1 cut(s)	718
BbvCI	CCTCAGC	3 cut(s)	1701, 2460, 2883
BbvI	GCAGC	3 cut(s)	516, 2427, 2854
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	4 cut(s)	56, 2320, 2931, 2976
BciVI	GTATCC	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	1007
BcoDI	GTCTC	3 cut(s)	525, 1126, 1365
BcuI	ACTAGT	2 cut(s)	41, 571
BfaI	CTAG	8 cut(s)	42, 354, 572, 599, 1167, 1211, 2748, 2970
BfmI	CTRYAG	2 cut(s)	1987, 2331
BfoI	RGCGCY	1 cut(s)	936
BfrI	CTTAAG	2 cut(s)	427, 1081
BfuAI	ACCTGC	1 cut(s)	1568
BfuI	GTATCC	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	594
BisI	GCNGC	6 cut(s)	190, 530, 1207, 1889, 2416, 2843
BlpI	GCTNAGC	1 cut(s)	1310
BlsI	GCNGC	6 cut(s)	191, 531, 1208, 1890, 2417, 2844
Bme1390I	CCNGG	5 cut(s)	56, 1007, 2320, 2931, 2976
Bme18I	GGWCC	2 cut(s)	1285, 2506
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	3 cut(s)	860, 1285, 2506
BmiI	GGNNCC	4 cut(s)	1947, 2507, 2695, 2782
BmrFI	CCNGG	5 cut(s)	56, 1007, 2320, 2931, 2976
BpiI	GAAGAC	2 cut(s)	294, 743
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu10I	CCTNAGC	5 cut(s)	1281, 1701, 2460, 2724, 2883
Bpu1102I	GCTNAGC	1 cut(s)	1310
Bpu14I	TTCGAA	1 cut(s)	1294
BpuEI	CTTGAG	2 cut(s)	427, 828
BpuMI	CCSGG	1 cut(s)	1007
BsaAI	YACGTR	3 cut(s)	793, 1962, 2399
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 2846, 2876
Bsc4I	CCNNNNNNNGG	6 cut(s)	181, 1198, 1825, 2690, 2749, 2884
Bse1I	ACTGG	5 cut(s)	881, 886, 1927, 2356, 2695
Bse3DI	GCAATG	2 cut(s)	1357, 2124
BseBI	CCWGG	4 cut(s)	56, 2320, 2931, 2976
BseLI	CCNNNNNNNGG	6 cut(s)	181, 1198, 1825, 2690, 2749, 2884
BseMI	GCAATG	2 cut(s)	1357, 2124
BseNI	ACTGG	5 cut(s)	881, 886, 1927, 2356, 2695
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	718
BseXI	GCAGC	3 cut(s)	516, 2427, 2854
BseYI	CCCAGC	1 cut(s)	2308
BsgI	GTGCAG	2 cut(s)	1404, 1702
Bsh1236I	CGCG	1 cut(s)	1206
BshFI	GGCC	7 cut(s)	185, 240, 597, 861, 1191, 1209, 2327
BshNI	GGYRCC	2 cut(s)	2693, 2780
BsiHKAI	GWGCWC	1 cut(s)	718
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	2 cut(s)	1007, 2610
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	6 cut(s)	181, 1198, 1825, 2690, 2749, 2884
BsmAI	GTCTC	3 cut(s)	525, 1126, 1365
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	2 cut(s)	498, 1982
BsnI	GGCC	7 cut(s)	185, 240, 597, 861, 1191, 1209, 2327
BsoBI	CYCGRG	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	1294
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp1407I	TGTACA	1 cut(s)	3015
Bsp143I	GATC	3 cut(s)	62, 1600, 2215
Bsp1720I	GCTNAGC	1 cut(s)	1310
BspACI	CCGC	7 cut(s)	189, 367, 532, 1206, 1380, 1829, 1888
BspANI	GGCC	7 cut(s)	185, 240, 597, 861, 1191, 1209, 2327
BspFNI	CGCG	1 cut(s)	1206
BspHI	TCATGA	1 cut(s)	2269
BspLI	GGNNCC	4 cut(s)	1947, 2507, 2695, 2782
BspMAI	CTGCAG	1 cut(s)	1991
BspMI	ACCTGC	1 cut(s)	1568
BspPI	GGATC	1 cut(s)	2210
BspQI	GCTCTTC	2 cut(s)	1168, 2203
BspT104I	TTCGAA	1 cut(s)	1294
BspT107I	GGYRCC	2 cut(s)	2693, 2780
BspTI	CTTAAG	2 cut(s)	427, 1081
BsrDI	GCAATG	2 cut(s)	1357, 2124
BsrGI	TGTACA	1 cut(s)	3015
BsrI	ACTGG	5 cut(s)	881, 886, 1927, 2356, 2695
BssMI	GATC	3 cut(s)	62, 1600, 2215
BssSI	CACGAG	1 cut(s)	1136
Bst2BI	CACGAG	1 cut(s)	1136
Bst2UI	CCWGG	4 cut(s)	56, 2320, 2931, 2976
Bst6I	CTCTTC	5 cut(s)	954, 1168, 2203, 2337, 2350
BstAFI	CTTAAG	2 cut(s)	427, 1081
BstAPI	GCANNNNNTGC	1 cut(s)	2780
BstAUI	TGTACA	1 cut(s)	3015
BstBAI	YACGTR	3 cut(s)	793, 1962, 2399
BstBI	TTCGAA	1 cut(s)	1294
BstC8I	GCNNGC	7 cut(s)	17, 33, 187, 1049, 1159, 2457, 2772
BstFNI	CGCG	1 cut(s)	1206
BstH2I	RGCGCY	1 cut(s)	936
BstHHI	GCGC	2 cut(s)	15, 935
BstKTI	GATC	3 cut(s)	65, 1603, 2218
BstMAI	GTCTC	3 cut(s)	525, 1126, 1365
BstMBI	GATC	3 cut(s)	62, 1600, 2215
BstMWI	GCNNNNNNNGC	7 cut(s)	212, 594, 1057, 1244, 2239, 2780, 2839
BstNI	CCWGG	4 cut(s)	56, 2320, 2931, 2976
BstNSI	RCATGY	1 cut(s)	1421
BstSCI	CCNGG	5 cut(s)	54, 1005, 2318, 2929, 2974
BstSFI	CTRYAG	2 cut(s)	1987, 2331
BstSLI	GKGCMC	1 cut(s)	718
BstUI	CGCG	1 cut(s)	1206
BstV1I	GCAGC	3 cut(s)	516, 2427, 2854
BstV2I	GAAGAC	2 cut(s)	294, 743
BstXI	CCANNNNNNTGG	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	7 cut(s)	185, 240, 597, 861, 1191, 1209, 2327
BtsI	GCAGTG	2 cut(s)	416, 1233
BtsIMutI	CAGTG	5 cut(s)	292, 416, 643, 1233, 2001
BveI	ACCTGC	1 cut(s)	1568
Cac8I	GCNNGC	7 cut(s)	17, 33, 187, 1049, 1159, 2457, 2772
CaiI	CAGNNNCTG	2 cut(s)	22, 2519
CciI	TCATGA	1 cut(s)	2269
CfoI	GCGC	2 cut(s)	15, 935
Cfr13I	GGNCC	3 cut(s)	860, 1285, 2506
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	5 cut(s)	819, 1963, 2488, 2940, 3016
CviAII	CATG	7 cut(s)	236, 779, 1052, 1375, 1418, 1672, 2270
CviQI	GTAC	5 cut(s)	819, 1963, 2488, 2940, 3016
DpnI	GATC	3 cut(s)	64, 1602, 2217
DpnII	GATC	3 cut(s)	62, 1600, 2215
DraI	TTTAAA	3 cut(s)	1258, 1783, 2055
Eam1104I	CTCTTC	5 cut(s)	954, 1168, 2203, 2337, 2350
EarI	CTCTTC	5 cut(s)	954, 1168, 2203, 2337, 2350
EciI	GGCGGA	1 cut(s)	1844
Eco47I	GGWCC	2 cut(s)	1285, 2506
Eco47III	AGCGCT	1 cut(s)	934
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	793
Eco88I	CYCGRG	1 cut(s)	719
EcoO109I	RGGNCCY	2 cut(s)	1285, 2506
EcoRII	CCWGG	4 cut(s)	54, 2318, 2929, 2974
EcoT22I	ATGCAT	1 cut(s)	2235
FaeI	CATG	7 cut(s)	239, 782, 1055, 1378, 1421, 1675, 2273
FalI	AAGNNNNNCTT	4 cut(s)	951, 983, 1298, 1330
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	7 cut(s)	235, 778, 1051, 1374, 1417, 1671, 2269
FauI	CCCGC	1 cut(s)	374
FauNDI	CATATG	2 cut(s)	2593, 3032
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	6 cut(s)	190, 530, 1207, 1889, 2416, 2843
Fsp4HI	GCNGC	6 cut(s)	190, 530, 1207, 1889, 2416, 2843
FspBI	CTAG	8 cut(s)	42, 354, 572, 599, 1167, 1211, 2748, 2970
GlaI	GCGC	2 cut(s)	14, 934
GluI	GCNGC	6 cut(s)	190, 530, 1207, 1889, 2416, 2843
GsaI	CCCAGC	1 cut(s)	2312
HaeII	RGCGCY	1 cut(s)	936
HaeIII	GGCC	7 cut(s)	185, 240, 597, 861, 1191, 1209, 2327
HapII	CCGG	2 cut(s)	1007, 2610
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	2 cut(s)	15, 935
Hin1II	CATG	7 cut(s)	239, 782, 1055, 1378, 1421, 1675, 2273
Hin6I	GCGC	2 cut(s)	13, 933
HinP1I	GCGC	2 cut(s)	13, 933
HincII	GTYRAC	2 cut(s)	577, 1753
HindII	GTYRAC	2 cut(s)	577, 1753
HindIII	AAGCTT	2 cut(s)	504, 2240
HinfI	GANTC	8 cut(s)	136, 195, 265, 379, 409, 551, 1142, 1796
HpaI	GTTAAC	2 cut(s)	577, 1753
HpaII	CCGG	2 cut(s)	1007, 2610
HphI	GGTGA	7 cut(s)	131, 269, 355, 910, 1324, 1496, 2009
Hpy166II	GTNNAC	6 cut(s)	47, 577, 716, 1583, 1666, 1753
Hpy188III	TCNNGA	7 cut(s)	653, 758, 1368, 1742, 1870, 1949, 2270
Hpy8I	GTNNAC	6 cut(s)	47, 577, 716, 1583, 1666, 1753
HpyCH4IV	ACGT	4 cut(s)	792, 1961, 2398, 2486
HpyF10VI	GCNNNNNNNGC	7 cut(s)	212, 594, 1057, 1244, 2239, 2780, 2839
HpySE526I	ACGT	4 cut(s)	792, 1961, 2398, 2486
Hsp92II	CATG	7 cut(s)	239, 782, 1055, 1378, 1421, 1675, 2273
HspAI	GCGC	2 cut(s)	13, 933
KspAI	GTTAAC	2 cut(s)	577, 1753
Kzo9I	GATC	3 cut(s)	62, 1600, 2215
LguI	GCTCTTC	2 cut(s)	1168, 2203
LmnI	GCTCC	4 cut(s)	106, 1031, 1951, 2752
Lsp1109I	GCAGC	3 cut(s)	516, 2427, 2854
MaeI	CTAG	8 cut(s)	42, 354, 572, 599, 1167, 1211, 2748, 2970
MaeII	ACGT	4 cut(s)	792, 1961, 2398, 2486
MaeIII	GTNAC	7 cut(s)	766, 788, 1015, 1957, 1997, 2069, 2167
MalI	GATC	3 cut(s)	64, 1602, 2217
MboI	GATC	3 cut(s)	62, 1600, 2215
MfeI	CAATTG	1 cut(s)	1800
MhlI	GDGCHC	1 cut(s)	718
MlyI	GAGTC	3 cut(s)	130, 418, 1805
MmeI	TCCRAC	2 cut(s)	379, 1243
Mph1103I	ATGCAT	1 cut(s)	2235
MroXI	GAANNNNTTC	1 cut(s)	1300
MslI	CAYNNNNRTG	1 cut(s)	285
MspCI	CTTAAG	2 cut(s)	427, 1081
MspI	CCGG	2 cut(s)	1007, 2610
MspR9I	CCNGG	5 cut(s)	56, 1007, 2320, 2931, 2976
MunI	CAATTG	1 cut(s)	1800
Mva1269I	GAATGC	2 cut(s)	498, 1982
MvaI	CCWGG	4 cut(s)	56, 2320, 2931, 2976
MvnI	CGCG	1 cut(s)	1206
MwoI	GCNNNNNNNGC	7 cut(s)	212, 594, 1057, 1244, 2239, 2780, 2839
NciI	CCSGG	1 cut(s)	1007
NdeI	CATATG	2 cut(s)	2593, 3032
NdeII	GATC	3 cut(s)	62, 1600, 2215
NlaIII	CATG	7 cut(s)	239, 782, 1055, 1378, 1421, 1675, 2273
NlaIV	GGNNCC	4 cut(s)	1947, 2507, 2695, 2782
NmeAIII	GCCGAG	1 cut(s)	2929
NmuCI	GTSAC	3 cut(s)	788, 1957, 1997
NsiI	ATGCAT	1 cut(s)	2235
NspI	RCATGY	1 cut(s)	1421
NspV	TTCGAA	1 cut(s)	1294
PaeR7I	CTCGAG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	2269
PciI	ACATGT	1 cut(s)	1417
PciSI	GCTCTTC	2 cut(s)	1168, 2203
PctI	GAATGC	2 cut(s)	498, 1982
PdmI	GAANNNNTTC	1 cut(s)	1300
PfeI	GAWTC	5 cut(s)	195, 265, 379, 551, 1142
PflFI	GACNNNGTC	1 cut(s)	1955
PflMI	CCANNNNNTGG	2 cut(s)	1198, 1825
PfoI	TCCNGGA	1 cut(s)	1005
PkrI	GCNGC	6 cut(s)	191, 531, 1208, 1890, 2417, 2844
PleI	GAGTC	3 cut(s)	130, 417, 1804
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	3 cut(s)	130, 417, 1804
Ppu21I	YACGTR	3 cut(s)	793, 1962, 2399
PpuMI	RGGWCCY	2 cut(s)	1285, 2506
PscI	ACATGT	1 cut(s)	1417
PshBI	ATTAAT	1 cut(s)	1709
PsiI	TTATAA	2 cut(s)	911, 2280
Psp5II	RGGWCCY	2 cut(s)	1285, 2506
Psp6I	CCWGG	4 cut(s)	54, 2318, 2929, 2974
PspCI	CACGTG	1 cut(s)	793
PspFI	CCCAGC	1 cut(s)	2308
PspGI	CCWGG	4 cut(s)	54, 2318, 2929, 2974
PspN4I	GGNNCC	4 cut(s)	1947, 2507, 2695, 2782
PspPI	GGNCC	3 cut(s)	860, 1285, 2506
PspPPI	RGGWCCY	2 cut(s)	1285, 2506
PspXI	VCTCGAGB	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	1991
PstNI	CAGNNNCTG	2 cut(s)	22, 2519
PsyI	GACNNNGTC	1 cut(s)	1955
RsaI	GTAC	5 cut(s)	820, 1964, 2489, 2941, 3017
RsaNI	GTAC	5 cut(s)	819, 1963, 2488, 2940, 3016
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	2 cut(s)	1168, 2203
SatI	GCNGC	6 cut(s)	190, 530, 1207, 1889, 2416, 2843
Sau3AI	GATC	3 cut(s)	62, 1600, 2215
Sau96I	GGNCC	3 cut(s)	860, 1285, 2506
SchI	GAGTC	3 cut(s)	130, 418, 1805
ScrFI	CCNGG	5 cut(s)	56, 1007, 2320, 2931, 2976
SduI	GDGCHC	1 cut(s)	718
SfcI	CTRYAG	2 cut(s)	1987, 2331
Sfr274I	CTCGAG	1 cut(s)	719
SfuI	TTCGAA	1 cut(s)	1294
SinI	GGWCC	2 cut(s)	1285, 2506
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	5 cut(s)	406, 427, 719, 843, 1081
SmoI	CTYRAG	5 cut(s)	406, 427, 719, 843, 1081
SpeI	ACTAGT	2 cut(s)	41, 571
SsiI	CCGC	7 cut(s)	189, 367, 532, 1206, 1380, 1829, 1888
SspI	AATATT	3 cut(s)	1432, 2479, 2494
SspMI	CTAG	8 cut(s)	42, 354, 572, 599, 1167, 1211, 2748, 2970
StyD4I	CCNGG	5 cut(s)	54, 1005, 2318, 2929, 2974
TaiI	ACGT	4 cut(s)	795, 1964, 2401, 2489
TaqI	TCGA	3 cut(s)	61, 720, 1294
TatI	WGTACW	2 cut(s)	818, 3015
TauI	GCSGC	3 cut(s)	192, 1209, 1891
TfiI	GAWTC	5 cut(s)	195, 265, 379, 551, 1142
TscAI	CASTG	5 cut(s)	292, 423, 643, 1240, 2008
TseFI	GTSAC	3 cut(s)	788, 1957, 1997
TseI	GCWGC	3 cut(s)	529, 2415, 2842
Tsp45I	GTSAC	3 cut(s)	788, 1957, 1997
TspRI	CASTG	5 cut(s)	292, 423, 643, 1240, 2008
Tth111I	GACNNNGTC	1 cut(s)	1955
Van91I	CCANNNNNTGG	2 cut(s)	1198, 1825
Vha464I	CTTAAG	2 cut(s)	427, 1081
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	2 cut(s)	1285, 2506
VspI	ATTAAT	1 cut(s)	1709
XapI	RAATTY	3 cut(s)	892, 1589, 2056
XceI	RCATGY	1 cut(s)	1421
XhoI	CTCGAG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	1300
XspI	CTAG	8 cut(s)	42, 354, 572, 599, 1167, 1211, 2748, 2970
Zsp2I	ATGCAT	1 cut(s)	2235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.