Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

88497954 .. 88516375

Gene Structure 18422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG658400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3549 bp

ATGGAAGAGTGCGATTCGACTGGTCCCTATCAGTATAAGATTACCTCTTATTGCAGGATCATGAATGATCTTATTAAGTCAACCAAAGATGTGGAGCTTCTCATTGAAAAAGGCATTCTTCCGAGGGTCGGTATCAGCACGGAGGAGTTGGCTGTCCAGACCTCTCTACTGCGGCCCCGACCTCTTCACCATAATCGACCTCTGTATCGTTCTTTCACTCTTCACGCGCACGCGCTTAGATTAACCCGATCGGTTTTCAGATCGACGACCGGTACCGGAATTTCATCTTCAATCCAGGAAACGGGTTCAAGCATGGATTCGTATACACTTAAGTCCATGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGTACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATAGAACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGGTCCTTGCGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACTCCCCAGCAAAAAATGATTTCTATTTGAAAAGCACCTTCAAAACTATATTTTCGATATCCTTATGCAATATTCAAGAGGGAAAGAACAGCGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGTAATCTCATTGAAAGTCTTTTCCTTAAGGGTGATGTTCAAATTCCGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTTGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGATGTGTGGGAGGGAAGGTCGCCCACCTTTTGATGATACAGGAATGGTTATAATCATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAACCACTAGAACCTGGGAGGCTGATGACGAAGTACTACTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGACAAAGGGAAGCGAAAAAAGCGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGACTGGTGATCCATCGGTTCATGATTTATCCCTTACCCAGGATATGAACTCCATGTGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAAAATTACAGAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAGGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGATAATTGAGATGGTCACTGGTCGAAAATACCCATATGGGAACCACATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTTTGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGCCTGAGGCCCAGTTTCAAGCTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCGAAAAAGTTCATGAAGATGAGATTGCTGCCAAATTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACTTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCATCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGCCCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCAAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACAACATCTTTCTAGTATCAAAAATCATCCAAATCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGGAGAAACCATATTTGAGCACATACGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTGTATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTATCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGAAGCTCCTGCAACCCTCATGGAATATTGAATGCTTCTCCCGGAGGTTTAAGCAATGGAGCCAATCTCTCATCAAGCAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCCGAAGCGACCTGCAGATCCAGCAAGCACTGTGGAGAATACTAGGAAGAAACATCAACACTCTCCAATTGTACCACCAAGGCACTGCTCGTTGACAGCAGTTGGAAAATCCAGAGAAGAAGAAACATTTCTTGGGTTTGAGAGTGTCTTTTCCTTTCATTGGCTAGTGTGTGGCGTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

1182

Amino Acids

133.73

Weight (kDa)

8.39

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	2 - 51	4.6e-07	Plant protein of unknown function
DEAD	PF00270	131 - 318	2.1e-29	DEAD/DEAH box helicase
ResIII	PF04851	142 - 277	4.3e-08	Type III restriction enzyme, res subunit
WHD_SNRNP200	PF23445	512 - 591	5.9e-13	Winged Helix-turn-helix domain
Sec63	PF02889	601 - 877	8.7e-43	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1469
AarI	CACCTGC	1 cut(s)	1882
Acc36I	ACCTGC	2 cut(s)	1882, 3385
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	272, 979
AccB7I	CCANNNNNTGG	1 cut(s)	2300
AccI	GTMKAC	3 cut(s)	323, 1386, 1996
AccII	CGCG	4 cut(s)	227, 233, 745, 753
AccIII	TCCGGA	1 cut(s)	3251
AciI	CCGC	4 cut(s)	172, 745, 965, 2510
AclWI	GGATC	7 cut(s)	65, 637, 821, 1251, 2093, 2363, 3377
AcsI	RAATTY	8 cut(s)	279, 728, 1287, 1841, 1926, 2183, 2708, 3079
AcuI	CTGAAG	3 cut(s)	2522, 2679, 2931
AfaI	GTAC	5 cut(s)	274, 616, 1734, 1832, 3438
AfeI	AGCGCT	1 cut(s)	904
AflII	CTTAAG	2 cut(s)	329, 1271
AgeI	ACCGGT	1 cut(s)	269
AjnI	CCWGG	6 cut(s)	294, 683, 1810, 2127, 2293, 2595
AjuI	GAANNNNNNNTTGG	2 cut(s)	3480, 3512
AleI	CACNNNNGTG	1 cut(s)	1224
AloI	GAACNNNNNNTCC	2 cut(s)	2874, 2906
Alw21I	GWGCWC	6 cut(s)	657, 1298, 1634, 2150, 2854, 3060
Alw26I	GTCTC	4 cut(s)	1600, 2345, 2436, 2445
Alw44I	GTGCAC	1 cut(s)	1294
AlwI	GGATC	7 cut(s)	65, 637, 821, 1251, 2093, 2363, 3377
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	3251
Aor51HI	AGCGCT	1 cut(s)	904
AoxI	GGCC	5 cut(s)	173, 1019, 1228, 2627, 2869
ApaLI	GTGCAC	1 cut(s)	1294
ApeKI	GCWGC	4 cut(s)	1756, 1884, 2702, 3014
ApoI	RAATTY	8 cut(s)	279, 728, 1287, 1841, 1926, 2183, 2708, 3079
AsiGI	ACCGGT	1 cut(s)	269
Asp700I	GAANNNNTTC	3 cut(s)	408, 2682, 3492
Asp718I	GGTACC	1 cut(s)	272
AspA2I	CCTAGG	1 cut(s)	2372
AspLEI	GCGC	5 cut(s)	229, 235, 454, 905, 1950
AspS9I	GGNCC	5 cut(s)	23, 174, 958, 2628, 2870
AsuC2I	CCSGG	4 cut(s)	1665, 2486, 2873, 3294
AsuHPI	GGTGA	8 cut(s)	179, 649, 1289, 2030, 2108, 2320, 2524, 3100
AsuNHI	GCTAGC	1 cut(s)	2506
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	2 cut(s)	23, 958
AvrII	CCTAGG	1 cut(s)	2372
AxyI	CCTNAGG	1 cut(s)	2624
BaeGI	GKGCMC	2 cut(s)	1298, 2323
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
BanI	GGYRCC	2 cut(s)	272, 979
BanII	GRGCYC	2 cut(s)	657, 2829
BauI	CACGAG	2 cut(s)	831, 2853
BbsI	GAAGAC	1 cut(s)	2658
Bbv12I	GWGCWC	6 cut(s)	657, 1298, 1634, 2150, 2854, 3060
BbvCI	CCTCAGC	2 cut(s)	1920, 2361
BbvI	GCAGC	4 cut(s)	1768, 1896, 2689, 3001
BceAI	ACGGC	2 cut(s)	1899, 3170
BcgI	CGANNNNNNTGC	2 cut(s)	2310, 2344
BciT130I	CCWGG	6 cut(s)	296, 685, 1812, 2129, 2295, 2597
BciVI	GTATCC	1 cut(s)	1929
BclI	TGATCA	1 cut(s)	3090
BcnI	CCSGG	4 cut(s)	1665, 2486, 2873, 3294
BcoDI	GTCTC	4 cut(s)	1600, 2345, 2436, 2445
BfmI	CTRYAG	5 cut(s)	1415, 1572, 1882, 2158, 3378
BfoI	RGCGCY	2 cut(s)	455, 906
BfrI	CTTAAG	2 cut(s)	329, 1271
BfuAI	ACCTGC	2 cut(s)	1882, 3385
BfuI	GTATCC	1 cut(s)	1929
BisI	GCNGC	5 cut(s)	173, 1757, 1885, 2703, 3015
BlnI	CCTAGG	1 cut(s)	2372
BlpI	GCTNAGC	1 cut(s)	3010
BlsI	GCNGC	5 cut(s)	174, 1758, 1886, 2704, 3016
BmcAI	AGTACT	1 cut(s)	1832
Bme18I	GGWCC	2 cut(s)	23, 958
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	5 cut(s)	23, 174, 958, 2628, 2870
BmiI	GGNNCC	8 cut(s)	25, 176, 274, 354, 981, 2215, 2417, 3313
BmrI	ACTGGG	1 cut(s)	2625
BmsI	GCATC	5 cut(s)	724, 1768, 1885, 2162, 2217
BmtI	GCTAGC	1 cut(s)	2510
BmuI	ACTGGG	1 cut(s)	2625
BpiI	GAAGAC	1 cut(s)	2658
BplI	GAGNNNNNCTC	2 cut(s)	3303, 3335
Bpu10I	CCTNAGC	4 cut(s)	1151, 1920, 1943, 2361
Bpu1102I	GCTNAGC	1 cut(s)	3010
BpuEI	CTTGAG	2 cut(s)	959, 1223
BpuMI	CCSGG	4 cut(s)	1665, 2486, 2873, 3294
BsaBI	GATNNNNATC	1 cut(s)	1248
BsaWI	WCCGGW	5 cut(s)	269, 275, 659, 3085, 3251
BsaXI	ACNNNNNCTCC	8 cut(s)	1420, 1450, 2523, 2553, 2874, 2904, 3104, 3134
Bse118I	RCCGGY	2 cut(s)	269, 349
Bse1I	ACTGG	5 cut(s)	25, 463, 2098, 2398, 2631
Bse21I	CCTNAGG	1 cut(s)	2624
Bse3DI	GCAATG	2 cut(s)	1957, 3313
Bse8I	GATNNNNATC	1 cut(s)	1248
BseAI	TCCGGA	1 cut(s)	3251
BseBI	CCWGG	6 cut(s)	296, 685, 1812, 2129, 2295, 2597
BseGI	GGATG	7 cut(s)	532, 766, 1526, 1629, 2269, 2992, 3037
BseJI	GATNNNNATC	1 cut(s)	1248
BseMI	GCAATG	2 cut(s)	1957, 3313
BseMII	CTCAG	9 cut(s)	441, 513, 714, 1911, 1957, 2352, 2615, 3024, 3108
BseNI	ACTGG	5 cut(s)	25, 463, 2098, 2398, 2631
BseRI	GAGGAG	4 cut(s)	158, 2226, 3054, 3125
BseSI	GKGCMC	2 cut(s)	1298, 2323
BseXI	GCAGC	4 cut(s)	1768, 1896, 2689, 3001
BseYI	CCCAGC	1 cut(s)	1057
Bsh1236I	CGCG	4 cut(s)	227, 233, 745, 753
Bsh1285I	CGRYCG	2 cut(s)	251, 270
BshFI	GGCC	5 cut(s)	175, 1021, 1230, 2629, 2871
BshNI	GGYRCC	2 cut(s)	272, 979
BshTI	ACCGGT	1 cut(s)	269
BsiEI	CGRYCG	2 cut(s)	251, 270
BsiHKAI	GWGCWC	6 cut(s)	657, 1298, 1634, 2150, 2854, 3060
BsiHKCI	CYCGRG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	9
BsmAI	GTCTC	4 cut(s)	1600, 2345, 2436, 2445
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	4 cut(s)	114, 410, 2486, 3289
BsnI	GGCC	5 cut(s)	175, 1021, 1230, 2629, 2871
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	8 cut(s)	657, 1298, 1634, 2150, 2323, 2829, 2854, 3060
Bsp13I	TCCGGA	1 cut(s)	3251
Bsp1407I	TGTACA	1 cut(s)	1732
Bsp1720I	GCTNAGC	1 cut(s)	3010
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	4 cut(s)	172, 745, 965, 2510
BspANI	GGCC	5 cut(s)	175, 1021, 1230, 2629, 2871
BspCNI	CTCAG	9 cut(s)	440, 514, 715, 1912, 1956, 2353, 2616, 3023, 3109
BspEI	TCCGGA	1 cut(s)	3251
BspFNI	CGCG	4 cut(s)	227, 233, 745, 753
BspHI	TCATGA	5 cut(s)	60, 1473, 2110, 2608, 2686
BspLI	GGNNCC	8 cut(s)	25, 176, 274, 354, 981, 2215, 2417, 3313
BspMAI	CTGCAG	3 cut(s)	1576, 1886, 3382
BspMI	ACCTGC	2 cut(s)	1882, 3385
BspOI	GCTAGC	1 cut(s)	2510
BspPI	GGATC	7 cut(s)	65, 637, 821, 1251, 2093, 2363, 3377
BspQI	GCTCTTC	1 cut(s)	1905
BspT107I	GGYRCC	2 cut(s)	272, 979
BspTI	CTTAAG	2 cut(s)	329, 1271
BsrDI	GCAATG	2 cut(s)	1957, 3313
BsrFI	RCCGGY	2 cut(s)	269, 349
BsrGI	TGTACA	1 cut(s)	1732
BsrI	ACTGG	5 cut(s)	25, 463, 2098, 2398, 2631
BssAI	RCCGGY	2 cut(s)	269, 349
BssNAI	GTATAC	1 cut(s)	324
BssSI	CACGAG	2 cut(s)	831, 2853
BssT1I	CCWWGG	5 cut(s)	336, 988, 2372, 2829, 3443
Bst1107I	GTATAC	1 cut(s)	324
Bst2BI	CACGAG	2 cut(s)	831, 2853
Bst2UI	CCWGG	6 cut(s)	296, 685, 1812, 2129, 2295, 2597
Bst6I	CTCTTC	4 cut(s)	189, 225, 1477, 1905
BstAFI	CTTAAG	2 cut(s)	329, 1271
BstAPI	GCANNNNNTGC	1 cut(s)	645
BstAUI	TGTACA	1 cut(s)	1732
BstC8I	GCNNGC	5 cut(s)	231, 351, 876, 2508, 3391
BstDSI	CCRYGG	1 cut(s)	336
BstENI	CCTNNNNNAGG	2 cut(s)	987, 2126
BstF5I	GGATG	7 cut(s)	532, 766, 1526, 1629, 2269, 2992, 3037
BstFNI	CGCG	4 cut(s)	227, 233, 745, 753
BstH2I	RGCGCY	2 cut(s)	455, 906
BstHHI	GCGC	5 cut(s)	229, 235, 454, 905, 1950
BstMAI	GTCTC	4 cut(s)	1600, 2345, 2436, 2445
BstMCI	CGRYCG	2 cut(s)	251, 270
BstMWI	GCNNNNNNNGC	8 cut(s)	645, 780, 935, 979, 1027, 2038, 2154, 3386
BstNI	CCWGG	6 cut(s)	296, 685, 1812, 2129, 2295, 2597
BstNSI	RCATGY	2 cut(s)	369, 3337
BstSFI	CTRYAG	5 cut(s)	1415, 1572, 1882, 2158, 3378
BstSLI	GKGCMC	2 cut(s)	1298, 2323
BstUI	CGCG	4 cut(s)	227, 233, 745, 753
BstV1I	GCAGC	4 cut(s)	1768, 1896, 2689, 3001
BstV2I	GAAGAC	1 cut(s)	2658
BstX2I	RGATCY	2 cut(s)	629, 3382
BstXI	CCANNNNNNTGG	2 cut(s)	91, 626
BstYI	RGATCY	2 cut(s)	629, 3382
BstZ17I	GTATAC	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	2624
BsuI	GTATCC	1 cut(s)	1929
BsuRI	GGCC	5 cut(s)	175, 1021, 1230, 2629, 2871
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	7 cut(s)	532, 766, 1526, 1629, 2269, 2992, 3037
BtsI	GCAGTG	3 cut(s)	1180, 1409, 3448
BtsIMutI	CAGTG	7 cut(s)	1180, 1409, 1980, 2391, 2516, 3393, 3448
BveI	ACCTGC	2 cut(s)	1882, 3385
Cac8I	GCNNGC	5 cut(s)	231, 351, 876, 2508, 3391
CciI	TCATGA	5 cut(s)	60, 1473, 2110, 2608, 2686
CfoI	GCGC	5 cut(s)	229, 235, 454, 905, 1950
Cfr10I	RCCGGY	2 cut(s)	269, 349
Cfr13I	GGNCC	5 cut(s)	23, 174, 958, 2628, 2870
CsiI	ACCWGGT	1 cut(s)	2595
Csp6I	GTAC	5 cut(s)	273, 615, 1733, 1831, 3437
CspAI	ACCGGT	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	3378, 3413
CviQI	GTAC	5 cut(s)	273, 615, 1733, 1831, 3437
Eam1104I	CTCTTC	4 cut(s)	189, 225, 1477, 1905
EarI	CTCTTC	4 cut(s)	189, 225, 1477, 1905
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	5 cut(s)	336, 988, 2372, 2829, 3443
Eco147I	AGGCCT	1 cut(s)	1021
Eco24I	GRGCYC	2 cut(s)	657, 2829
Eco32I	GATATC	2 cut(s)	1110, 3349
Eco47I	GGWCC	2 cut(s)	23, 958
Eco47III	AGCGCT	1 cut(s)	904
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	3 cut(s)	2522, 2679, 2931
Eco81I	CCTNAGG	1 cut(s)	2624
Eco88I	CYCGRG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	2 cut(s)	987, 2126
EcoO109I	RGGNCCY	1 cut(s)	958
EcoRII	CCWGG	6 cut(s)	294, 683, 1810, 2127, 2293, 2595
EcoRV	GATATC	2 cut(s)	1110, 3349
EcoT14I	CCWWGG	5 cut(s)	336, 988, 2372, 2829, 3443
EcoT22I	ATGCAT	1 cut(s)	2177
EcoT38I	GRGCYC	2 cut(s)	657, 2829
ErhI	CCWWGG	5 cut(s)	336, 988, 2372, 2829, 3443
FalI	AAGNNNNNCTT	8 cut(s)	102, 134, 1144, 1176, 1820, 1852, 1884, 1916
FaqI	GGGAC	1 cut(s)	9
FauNDI	CATATG	2 cut(s)	1716, 2410
FbaI	TGATCA	1 cut(s)	3090
FblI	GTMKAC	3 cut(s)	323, 1386, 1996
Fnu4HI	GCNGC	5 cut(s)	173, 1757, 1885, 2703, 3015
FokI	GGATG	7 cut(s)	539, 773, 1533, 1636, 2276, 2979, 3044
FriOI	GRGCYC	2 cut(s)	657, 2829
Fsp4HI	GCNGC	5 cut(s)	173, 1757, 1885, 2703, 3015
GlaI	GCGC	5 cut(s)	228, 234, 453, 904, 1949
GluI	GCNGC	5 cut(s)	173, 1757, 1885, 2703, 3015
GsaI	CCCAGC	1 cut(s)	1061
HaeII	RGCGCY	2 cut(s)	455, 906
HaeIII	GGCC	5 cut(s)	175, 1021, 1230, 2629, 2871
HhaI	GCGC	5 cut(s)	229, 235, 454, 905, 1950
Hin6I	GCGC	5 cut(s)	227, 233, 452, 903, 1948
HinP1I	GCGC	5 cut(s)	227, 233, 452, 903, 1948
HincII	GTYRAC	3 cut(s)	81, 1997, 3459
HindII	GTYRAC	3 cut(s)	81, 1997, 3459
HindIII	AAGCTT	4 cut(s)	1158, 1961, 2639, 2864
HphI	GGTGA	8 cut(s)	179, 649, 1289, 2030, 2108, 2320, 2524, 3100
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	595, 1099, 1427
HpyCH4IV	ACGT	2 cut(s)	2848, 3024
HpyF10VI	GCNNNNNNNGC	8 cut(s)	645, 780, 935, 979, 1027, 2038, 2154, 3386
HpySE526I	ACGT	2 cut(s)	2848, 3024
HspAI	GCGC	5 cut(s)	227, 233, 452, 903, 1948
Kpn2I	TCCGGA	1 cut(s)	3251
KpnI	GGTACC	1 cut(s)	276
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	3090
LguI	GCTCTTC	1 cut(s)	1905
LmnI	GCTCC	8 cut(s)	94, 358, 652, 836, 1561, 2213, 3263, 3311
Lsp1109I	GCAGC	4 cut(s)	1768, 1896, 2689, 3001
LweI	GCATC	5 cut(s)	724, 1768, 1885, 2162, 2217
MabI	ACCWGGT	1 cut(s)	2595
MaeII	ACGT	2 cut(s)	2848, 3024
MaeIII	GTNAC	7 cut(s)	739, 1175, 2018, 2308, 2389, 2512, 2731
MfeI	CAATTG	2 cut(s)	1541, 3432
MflI	RGATCY	2 cut(s)	629, 3382
MhlI	GDGCHC	8 cut(s)	657, 1298, 1634, 2150, 2323, 2829, 2854, 3060
MlyI	GAGTC	4 cut(s)	1392, 2438, 2648, 3128
MmeI	TCCRAC	1 cut(s)	3448
Mph1103I	ATGCAT	1 cut(s)	2177
MroI	TCCGGA	1 cut(s)	3251
MroNI	GCCGGC	1 cut(s)	349
MroXI	GAANNNNTTC	3 cut(s)	408, 2682, 3492
MslI	CAYNNNNRTG	6 cut(s)	429, 443, 1168, 1224, 1500, 2691
MspA1I	CMGCKG	1 cut(s)	3014
MspCI	CTTAAG	2 cut(s)	329, 1271
MunI	CAATTG	2 cut(s)	1541, 3432
Mva1269I	GAATGC	4 cut(s)	114, 410, 2486, 3289
MvaI	CCWGG	6 cut(s)	296, 685, 1812, 2129, 2295, 2597
MvnI	CGCG	4 cut(s)	227, 233, 745, 753
MwoI	GCNNNNNNNGC	8 cut(s)	645, 780, 935, 979, 1027, 2038, 2154, 3386
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	4 cut(s)	1665, 2486, 2873, 3294
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	2 cut(s)	1716, 2410
NgoMIV	GCCGGC	1 cut(s)	349
NheI	GCTAGC	1 cut(s)	2506
NlaIV	GGNNCC	8 cut(s)	25, 176, 274, 354, 981, 2215, 2417, 3313
NmuCI	GTSAC	6 cut(s)	1175, 2018, 2308, 2389, 2512, 2731
NsiI	ATGCAT	1 cut(s)	2177
NspI	RCATGY	2 cut(s)	369, 3337
OliI	CACNNNNGTG	1 cut(s)	1224
PagI	TCATGA	5 cut(s)	60, 1473, 2110, 2608, 2686
PaqCI	CACCTGC	1 cut(s)	1882
PceI	AGGCCT	1 cut(s)	1021
PciSI	GCTCTTC	1 cut(s)	1905
PctI	GAATGC	4 cut(s)	114, 410, 2486, 3289
PdiI	GCCGGC	1 cut(s)	351
PdmI	GAANNNNTTC	3 cut(s)	408, 2682, 3492
PfeI	GAWTC	9 cut(s)	14, 317, 513, 671, 1320, 1507, 1535, 1660, 3364
PflMI	CCANNNNNTGG	1 cut(s)	2300
PfoI	TCCNGGA	3 cut(s)	294, 1663, 3292
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	174, 1758, 1886, 2704, 3016
Ple19I	CGATCG	1 cut(s)	251
PleI	GAGTC	4 cut(s)	1391, 2437, 2648, 3127
PpsI	GAGTC	4 cut(s)	1391, 2437, 2648, 3127
PpuMI	RGGWCCY	1 cut(s)	958
PsiI	TTATAA	1 cut(s)	1469
Psp124BI	GAGCTC	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	6 cut(s)	294, 683, 1810, 2127, 2293, 2595
PspFI	CCCAGC	1 cut(s)	1057
PspGI	CCWGG	6 cut(s)	294, 683, 1810, 2127, 2293, 2595
PspN4I	GGNNCC	8 cut(s)	25, 176, 274, 354, 981, 2215, 2417, 3313
PspPI	GGNCC	5 cut(s)	23, 174, 958, 2628, 2870
PspPPI	RGGWCCY	1 cut(s)	958
PstI	CTGCAG	3 cut(s)	1576, 1886, 3382
PsuI	RGATCY	2 cut(s)	629, 3382
PvuI	CGATCG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	3014
RsaI	GTAC	5 cut(s)	274, 616, 1734, 1832, 3438
RsaNI	GTAC	5 cut(s)	273, 615, 1733, 1831, 3437
RseI	CAYNNNNRTG	6 cut(s)	429, 443, 1168, 1224, 1500, 2691
SacI	GAGCTC	1 cut(s)	657
SalI	GTCGAC	1 cut(s)	1995
SapI	GCTCTTC	1 cut(s)	1905
SatI	GCNGC	5 cut(s)	173, 1757, 1885, 2703, 3015
Sau96I	GGNCC	5 cut(s)	23, 174, 958, 2628, 2870
ScaI	AGTACT	1 cut(s)	1832
SchI	GAGTC	4 cut(s)	1392, 2438, 2648, 3128
SduI	GDGCHC	8 cut(s)	657, 1298, 1634, 2150, 2323, 2829, 2854, 3060
SexAI	ACCWGGT	1 cut(s)	2595
SfaNI	GCATC	5 cut(s)	724, 1768, 1885, 2162, 2217
SfcI	CTRYAG	5 cut(s)	1415, 1572, 1882, 2158, 3378
SinI	GGWCC	2 cut(s)	23, 958
SmiMI	CAYNNNNRTG	6 cut(s)	429, 443, 1168, 1224, 1500, 2691
SmlI	CTYRAG	4 cut(s)	329, 974, 1238, 1271
SmoI	CTYRAG	4 cut(s)	329, 974, 1238, 1271
SseBI	AGGCCT	1 cut(s)	1021
SsiI	CCGC	4 cut(s)	172, 745, 965, 2510
SspI	AATATT	3 cut(s)	952, 1123, 3279
SstI	GAGCTC	1 cut(s)	657
StuI	AGGCCT	1 cut(s)	1021
StyI	CCWWGG	5 cut(s)	336, 988, 2372, 2829, 3443
TaiI	ACGT	2 cut(s)	2851, 3027
TaqII	GACCGA	1 cut(s)	1416
TatI	WGTACW	2 cut(s)	1732, 1830
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	9 cut(s)	14, 317, 513, 671, 1320, 1507, 1535, 1660, 3364
TscAI	CASTG	7 cut(s)	1180, 1416, 1987, 2398, 2523, 3400, 3455
TseFI	GTSAC	6 cut(s)	1175, 2018, 2308, 2389, 2512, 2731
TseI	GCWGC	4 cut(s)	1756, 1884, 2702, 3014
Tsp45I	GTSAC	6 cut(s)	1175, 2018, 2308, 2389, 2512, 2731
TspGWI	ACGGA	3 cut(s)	155, 1281, 1574
TspRI	CASTG	7 cut(s)	1180, 1416, 1987, 2398, 2523, 3400, 3455
Van91I	CCANNNNNTGG	1 cut(s)	2300
Vha464I	CTTAAG	2 cut(s)	329, 1271
VneI	GTGCAC	1 cut(s)	1294
VpaK11BI	GGWCC	2 cut(s)	23, 958
XagI	CCTNNNNNAGG	2 cut(s)	987, 2126
XapI	RAATTY	8 cut(s)	279, 728, 1287, 1841, 1926, 2183, 2708, 3079
XbaI	TCTAGA	1 cut(s)	2644
XceI	RCATGY	2 cut(s)	369, 3337
XmaJI	CCTAGG	1 cut(s)	2372
XmiI	GTMKAC	3 cut(s)	323, 1386, 1996
XmnI	GAANNNNTTC	3 cut(s)	408, 2682, 3492
ZrmI	AGTACT	1 cut(s)	1832
Zsp2I	ATGCAT	1 cut(s)	2177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.