Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

3562708 .. 3580260

Gene Structure 17553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGCCTGAATGGGACACCACAGATTGTTTCAGCCGACAAGCTAGCCACTTCACTATATCCGACATAGTGCACCATGGACGTCTGCAGTTGGTGCAGACGGTGGAGAATGAGGACCCCTCTGGAGTTAGGCTATCGGTTTGGGAGTTGAAAAAAGAAGAACTAGAACAAATGGCGGTACAAGGGGGTGGAGAACTGGGTCAGAAACACCGGAAAACCTATAATATAATGGACCAAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAGGTTTGGATCTTGGGGCGTAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGCAGCAGACATTATTTTAATCACTCCTGAGAAATTTGATGCAGTATCGCTGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCAATATAGCAGTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAGTAGTTAGCAGAATAAAATTGCTTGCTCACAACCCTGAAATGAAGTCAAGCGCTCAGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

209

Amino Acids

23.44

Weight (kDa)

5.8

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	79 - 207	7.7e-17	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	2 cut(s)	310, 494
AcsI	RAATTY	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	1 cut(s)	180
AfeI	AGCGCT	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	151, 496
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	3 cut(s)	44, 328, 602
AluI	AGCT	3 cut(s)	44, 328, 602
Alw21I	GWGCWC	2 cut(s)	75, 330
Alw44I	GTGCAC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	310, 494
Aor51HI	AGCGCT	1 cut(s)	577
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	3 cut(s)	115, 232, 288
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	44
AvaII	GGWCC	3 cut(s)	115, 232, 288
BaeGI	GKGCMC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	330
BauI	CACGAG	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	75, 330
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	259, 428
BciT130I	CCWGG	1 cut(s)	358
BfaI	CTAG	3 cut(s)	45, 164, 599
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	579
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	3 cut(s)	115, 232, 288
BmgT120I	GGNCC	3 cut(s)	115, 232, 288
BmiI	GGNNCC	2 cut(s)	117, 290
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	579
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	2 cut(s)	210, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	387, 593
BseNI	ACTGG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	426
BsiHKAI	GWGCWC	2 cut(s)	75, 330
BsiSI	CCGG	2 cut(s)	211, 333
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	75, 330
Bsp143I	GATC	2 cut(s)	302, 499
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	388, 592
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	117, 290
BspMAI	CTGCAG	1 cut(s)	90
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	310, 494
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	302, 499
BssNI	GRCGYC	1 cut(s)	82
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	46, 549
BstDEI	CTNAG	2 cut(s)	396, 579
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	2 cut(s)	305, 502
BstMBI	GATC	2 cut(s)	302, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 318, 453, 608
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	75
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	46, 549
CfoI	GCGC	1 cut(s)	578
Cfr13I	GGNCC	3 cut(s)	115, 232, 288
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	77, 587
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	2 cut(s)	396, 579
DpnI	GATC	2 cut(s)	304, 501
DpnII	GATC	2 cut(s)	302, 499
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	115, 232, 288
Eco47III	AGCGCT	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	80, 590
FaiI	YATR	8 cut(s)	59, 68, 78, 222, 227, 243, 461, 588
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	76, 586
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	3 cut(s)	45, 164, 599
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	579
HapII	CCGG	2 cut(s)	211, 333
HhaI	GCGC	1 cut(s)	578
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	80, 590
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	211, 333
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	73, 365
Hpy188I	TCNGA	2 cut(s)	64, 204
Hpy188III	TCNNGA	4 cut(s)	123, 269, 281, 395
Hpy8I	GTNNAC	2 cut(s)	73, 365
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	73, 88, 97, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 318, 453, 608
HpyF3I	CTNAG	2 cut(s)	396, 579
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	80, 590
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	2 cut(s)	302, 499
LmnI	GCTCC	2 cut(s)	325, 509
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	3 cut(s)	45, 164, 599
MaeII	ACGT	1 cut(s)	82
MalI	GATC	2 cut(s)	304, 501
MboI	GATC	2 cut(s)	302, 499
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	75, 330
MluCI	AATT	2 cut(s)	401, 542
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	106, 130, 288, 513
MseI	TTAA	1 cut(s)	386
MspI	CCGG	2 cut(s)	211, 333
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	94, 318, 453, 608
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	302, 499
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	80, 590
NlaIV	GGNNCC	2 cut(s)	117, 290
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	117, 290
PspPI	GGNCC	3 cut(s)	115, 232, 288
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	302, 499
Sau96I	GGNCC	3 cut(s)	115, 232, 288
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	75, 330
SetI	ASST	7 cut(s)	46, 85, 221, 279, 299, 330, 604
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	3 cut(s)	115, 232, 288
Sse9I	AATT	2 cut(s)	401, 542
SsiI	CCGC	1 cut(s)	176
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	3 cut(s)	45, 164, 599
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	85
TasI	AATT	2 cut(s)	401, 542
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	5 cut(s)	17, 357, 476, 495, 581
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	3 cut(s)	115, 232, 288
XapI	RAATTY	1 cut(s)	401
XspI	CTAG	3 cut(s)	45, 164, 599
ZraI	GACGTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.