Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

3139467 .. 3150967

Gene Structure 11501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3261 bp

ATGAACTCCGGACTGTCCCTTCGCCTCCCGAACGAACAAGAAGGTGATGGTAGACCGGTTCGATGTGTGATGTCAACTCGGGAGCTACCGATCCTTGCTCGAGTCCGGTGCCGCATCGCTCGACCCTTAGGAGTTAATCGATGGAAGTACGGTGGCGCGAGCGTCGTAGTGAGTGTTGGGGCGGTGTGGCCACGAGCGATGGGGAGAAGAGGAAGGGTGGTAGTGACGGTTCGAGTCCGGGTCCGCATCGAGAAGCTTGGATCGGCAACAAGTAGGCGGGATGGCATCGAGAGTTCCCGGTCCGAAATAAGAGTTGGAGGAACATGTGTGGTTTTGAGATCTGCGATTCTCTTAGTATTTTACTTCGATTTTCAAAGATTTGAGGACGGATTTGAAGAGAATGAGCAGTTTTGTGTGCTTTGGTATTACAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGTACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATAGAACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGGACCTTGTGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGCTATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTTAACTAGAAAAGGTGCGCAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGTAATCTCATTGAAAGTCTTTTCCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGTATATATCTTGTCTTTACATCAAGGCTCTATTTGAAACAAATGAGCCAGGTCAAACAAGAAAAATTCTTCTGGTGTCTACATGCATGTCAGCACTTTTAGAAACTTTTGTCTTCGAATTCGTTAATCCTGTTCTTATTGGATATCAGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAAACACTAGAACCTGGGAGGCTGATGACGAAGTACTACTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGACAAAGGGAAGCGAAAAAGAAATTGCCAGATGCATGAAAGAATTTTTATTTACCAAAAGAATTACAGAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGATAATTGAGATGGTCACTGATCGAAAATACCCATATGGGAACCACATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGCCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGGCCCAGTTTCAAGCTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCGACAAAGTTCATGAAGATGAGATTGCTGCCAAATTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCATCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCAAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACAACATCTTTCTAGAGAAACAATATTTGAGCACATACGCACAAAAGCAAAGAATTTTCCGGTGATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTGTATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTATCAGAGATACTGAATGTGATAGGGGTTGCTCTCCGGAAGCTCCTGCAACCCTCATGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

1086

Amino Acids

123.78

Weight (kDa)

8.49

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	145 - 334	7.6e-30	DEAD/DEAH box helicase
ResIII	PF04851	156 - 291	4.2e-08	Type III restriction enzyme, res subunit
WHD_SNRNP200	PF23445	568 - 647	5.3e-13	Winged Helix-turn-helix domain
Sec63	PF02889	658 - 723	3e-14	Sec63 Brl domain
Sec63	PF02889	741 - 889	1.3e-06	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2050
Acc16I	TGCGCA	1 cut(s)	1155
Acc36I	ACCTGC	1 cut(s)	2050
AccB1I	GGYRCC	2 cut(s)	108, 1021
AccB7I	CCANNNNNTGG	1 cut(s)	2345
AccBSI	CCGCTC	1 cut(s)	1124
AccI	GTMKAC	4 cut(s)	52, 1479, 1589, 2164
AccII	CGCG	3 cut(s)	158, 787, 795
AccIII	TCCGGA	2 cut(s)	8, 3229
AciI	CCGC	7 cut(s)	112, 182, 244, 277, 787, 1122, 2555
AclWI	GGATC	6 cut(s)	85, 268, 679, 863, 1344, 2408
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	9 cut(s)	770, 1380, 1575, 1628, 2009, 2094, 2229, 2747, 3058
AcuI	CTGAAG	3 cut(s)	2567, 2718, 2970
AfaI	GTAC	4 cut(s)	149, 658, 1902, 2000
AfeI	AGCGCT	1 cut(s)	946
AfiI	CCNNNNNNNGG	7 cut(s)	590, 625, 1031, 2089, 2345, 2827, 2918
AflII	CTTAAG	1 cut(s)	1364
AflIII	ACRYGT	1 cut(s)	323
AgeI	ACCGGT	1 cut(s)	55
AjnI	CCWGG	5 cut(s)	725, 1558, 1978, 2338, 2640
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AleI	CACNNNNGTG	2 cut(s)	1317, 2799
AloI	GAACNNNNNNTCC	4 cut(s)	1644, 1676, 2913, 2945
Alw21I	GWGCWC	5 cut(s)	699, 1391, 1802, 2893, 3039
Alw26I	GTCTC	4 cut(s)	1768, 2390, 2481, 2490
Alw44I	GTGCAC	1 cut(s)	1387
AlwI	GGATC	6 cut(s)	85, 268, 679, 863, 1344, 2408
Ama87I	CYCGRG	3 cut(s)	78, 99, 675
Aor13HI	TCCGGA	2 cut(s)	8, 3229
Aor51HI	AGCGCT	1 cut(s)	946
AoxI	GGCC	6 cut(s)	188, 1061, 1191, 1321, 2533, 2666
ApaLI	GTGCAC	1 cut(s)	1387
ApeKI	GCWGC	4 cut(s)	1163, 1924, 2052, 2741
ApoI	RAATTY	9 cut(s)	770, 1380, 1575, 1628, 2009, 2094, 2229, 2747, 3058
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	450
AspA2I	CCTAGG	1 cut(s)	2417
AspLEI	GCGC	5 cut(s)	158, 496, 947, 1156, 2118
AspS9I	GGNCC	6 cut(s)	241, 300, 1000, 2533, 2667, 2909
AsuC2I	CCSGG	4 cut(s)	239, 298, 1833, 2531
AsuHPI	GGTGA	7 cut(s)	56, 691, 1382, 2198, 2365, 2569, 3079
AsuII	TTCGAA	1 cut(s)	1626
AsuNHI	GCTAGC	1 cut(s)	2551
AvaI	CYCGRG	3 cut(s)	78, 99, 675
AvaII	GGWCC	4 cut(s)	241, 300, 1000, 2909
AvrII	CCTAGG	1 cut(s)	2417
AxyI	CCTNAGG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	1391
BalI	TGGCCA	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	108, 1021
BanII	GRGCYC	2 cut(s)	699, 2868
BauI	CACGAG	3 cut(s)	192, 873, 2892
BbsI	GAAGAC	2 cut(s)	1615, 2697
Bbv12I	GWGCWC	5 cut(s)	699, 1391, 1802, 2893, 3039
BbvCI	CCTCAGC	2 cut(s)	2088, 2406
BbvI	GCAGC	4 cut(s)	1175, 1936, 2064, 2728
BceAI	ACGGC	2 cut(s)	2067, 3149
BcgI	CGANNNNNNTGC	4 cut(s)	90, 124, 2355, 2389
BciT130I	CCWGG	5 cut(s)	727, 1560, 1980, 2340, 2642
BciVI	GTATCC	1 cut(s)	2097
BclI	TGATCA	1 cut(s)	3069
BcnI	CCSGG	4 cut(s)	239, 298, 1833, 2531
BcoDI	GTCTC	4 cut(s)	1768, 2390, 2481, 2490
BfmI	CTRYAG	3 cut(s)	1508, 1740, 2050
BfoI	RGCGCY	2 cut(s)	497, 948
BfrI	CTTAAG	1 cut(s)	1364
BfuAI	ACCTGC	1 cut(s)	2050
BfuI	GTATCC	1 cut(s)	2097
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	5 cut(s)	112, 1164, 1925, 2053, 2742
BlnI	CCTAGG	1 cut(s)	2417
BlsI	GCNGC	5 cut(s)	113, 1165, 1926, 2054, 2743
BmcAI	AGTACT	1 cut(s)	2000
Bme1390I	CCNGG	9 cut(s)	239, 298, 727, 1560, 1833, 1980, 2340, 2531, 2642
Bme18I	GGWCC	4 cut(s)	241, 300, 1000, 2909
BmeT110I	CYCGRG	3 cut(s)	78, 99, 675
BmgT120I	GGNCC	6 cut(s)	241, 300, 1000, 2533, 2667, 2909
BmiI	GGNNCC	6 cut(s)	110, 242, 1023, 2260, 2462, 2534
BmrFI	CCNGG	9 cut(s)	239, 298, 727, 1560, 1833, 1980, 2340, 2531, 2642
BmrI	ACTGGG	1 cut(s)	2664
BmsI	GCATC	8 cut(s)	123, 255, 294, 766, 1936, 2053, 2208, 2262
BmtI	GCTAGC	1 cut(s)	2555
BmuI	ACTGGG	1 cut(s)	2664
BpiI	GAAGAC	2 cut(s)	1615, 2697
Bpu10I	CCTNAGC	4 cut(s)	1244, 2088, 2111, 2406
Bpu14I	TTCGAA	1 cut(s)	1626
BpuEI	CTTGAG	2 cut(s)	1001, 1316
BpuMI	CCSGG	4 cut(s)	239, 298, 1833, 2531
Bsa29I	ATCGAT	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	2801
BsaBI	GATNNNNATC	1 cut(s)	1341
BsaJI	CCNNGG	7 cut(s)	1030, 1979, 2339, 2417, 2530, 2536, 2868
BsaWI	WCCGGW	7 cut(s)	8, 55, 105, 701, 2911, 3064, 3229
BsaXI	ACNNNNNCTCC	6 cut(s)	2568, 2598, 2913, 2943, 3083, 3113
Bsc4I	CCNNNNNNNGG	7 cut(s)	590, 625, 1031, 2089, 2345, 2827, 2918
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	505, 2670
Bse21I	CCTNAGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	2125
Bse8I	GATNNNNATC	1 cut(s)	1341
BseAI	TCCGGA	2 cut(s)	8, 3229
BseBI	CCWGG	5 cut(s)	727, 1560, 1980, 2340, 2642
BseCI	ATCGAT	1 cut(s)	139
BseDI	CCNNGG	7 cut(s)	1030, 1979, 2339, 2417, 2530, 2536, 2868
BseGI	GGATG	6 cut(s)	286, 574, 808, 1694, 1797, 2314
BseJI	GATNNNNATC	1 cut(s)	1341
BseLI	CCNNNNNNNGG	7 cut(s)	590, 625, 1031, 2089, 2345, 2827, 2918
BseMI	GCAATG	1 cut(s)	2125
BseMII	CTCAG	8 cut(s)	483, 555, 756, 1193, 2079, 2125, 2397, 3087
BseNI	ACTGG	2 cut(s)	505, 2670
BseRI	GAGGAG	2 cut(s)	2271, 3104
BseSI	GKGCMC	1 cut(s)	1391
BseXI	GCAGC	4 cut(s)	1175, 1936, 2064, 2728
Bsh1236I	CGCG	3 cut(s)	158, 787, 795
BshFI	GGCC	6 cut(s)	190, 1063, 1193, 1323, 2535, 2668
BshNI	GGYRCC	2 cut(s)	108, 1021
BshTI	ACCGGT	1 cut(s)	55
BshVI	ATCGAT	1 cut(s)	139
BsiHKAI	GWGCWC	5 cut(s)	699, 1391, 1802, 2893, 3039
BsiHKCI	CYCGRG	3 cut(s)	78, 99, 675
BslI	CCNNNNNNNGG	7 cut(s)	590, 625, 1031, 2089, 2345, 2827, 2918
BsmAI	GTCTC	4 cut(s)	1768, 2390, 2481, 2490
BsmI	GAATGC	2 cut(s)	452, 2531
BsnI	GGCC	6 cut(s)	190, 1063, 1193, 1323, 2535, 2668
BsoBI	CYCGRG	3 cut(s)	78, 99, 675
Bsp119I	TTCGAA	1 cut(s)	1626
Bsp1286I	GDGCHC	6 cut(s)	699, 1391, 1802, 2868, 2893, 3039
Bsp13I	TCCGGA	2 cut(s)	8, 3229
Bsp1407I	TGTACA	1 cut(s)	1900
BspACI	CCGC	7 cut(s)	112, 182, 244, 277, 787, 1122, 2555
BspANI	GGCC	6 cut(s)	190, 1063, 1193, 1323, 2535, 2668
BspCNI	CTCAG	8 cut(s)	482, 556, 757, 1192, 2080, 2124, 2398, 3088
BspDI	ATCGAT	1 cut(s)	139
BspEI	TCCGGA	2 cut(s)	8, 3229
BspFNI	CGCG	3 cut(s)	158, 787, 795
BspHI	TCATGA	2 cut(s)	2653, 2725
BspLI	GGNNCC	6 cut(s)	110, 242, 1023, 2260, 2462, 2534
BspMAI	CTGCAG	2 cut(s)	1744, 2054
BspMI	ACCTGC	1 cut(s)	2050
BspOI	GCTAGC	1 cut(s)	2555
BspPI	GGATC	6 cut(s)	85, 268, 679, 863, 1344, 2408
BspQI	GCTCTTC	1 cut(s)	2073
BspT104I	TTCGAA	1 cut(s)	1626
BspT107I	GGYRCC	2 cut(s)	108, 1021
BspTI	CTTAAG	1 cut(s)	1364
BsrBI	CCGCTC	1 cut(s)	1124
BsrDI	GCAATG	1 cut(s)	2125
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	1900
BsrI	ACTGG	2 cut(s)	505, 2670
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	7 cut(s)	1030, 1979, 2339, 2417, 2530, 2536, 2868
BssSI	CACGAG	3 cut(s)	192, 873, 2892
BssT1I	CCWWGG	4 cut(s)	1030, 2417, 2536, 2868
Bst2BI	CACGAG	3 cut(s)	192, 873, 2892
Bst2UI	CCWGG	5 cut(s)	727, 1560, 1980, 2340, 2642
Bst6I	CTCTTC	3 cut(s)	202, 390, 2073
BstAFI	CTTAAG	1 cut(s)	1364
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstAUI	TGTACA	1 cut(s)	1900
BstBAI	YACGTR	1 cut(s)	2801
BstBI	TTCGAA	1 cut(s)	1626
BstC8I	GCNNGC	3 cut(s)	160, 918, 2553
BstENI	CCTNNNNNAGG	1 cut(s)	1029
BstF5I	GGATG	6 cut(s)	286, 574, 808, 1694, 1797, 2314
BstFNI	CGCG	3 cut(s)	158, 787, 795
BstH2I	RGCGCY	2 cut(s)	497, 948
BstHHI	GCGC	5 cut(s)	158, 496, 947, 1156, 2118
BstMAI	GTCTC	4 cut(s)	1768, 2390, 2481, 2490
BstMWI	GCNNNNNNNGC	7 cut(s)	687, 822, 977, 1021, 1069, 1160, 1240
BstNI	CCWGG	5 cut(s)	727, 1560, 1980, 2340, 2642
BstNSI	RCATGY	3 cut(s)	327, 1596, 1600
BstSCI	CCNGG	9 cut(s)	237, 296, 725, 1558, 1831, 1978, 2338, 2529, 2640
BstSFI	CTRYAG	3 cut(s)	1508, 1740, 2050
BstSLI	GKGCMC	1 cut(s)	1391
BstUI	CGCG	3 cut(s)	158, 787, 795
BstV1I	GCAGC	4 cut(s)	1175, 1936, 2064, 2728
BstV2I	GAAGAC	2 cut(s)	1615, 2697
BstX2I	RGATCY	2 cut(s)	338, 671
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	2 cut(s)	338, 671
Bsu15I	ATCGAT	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	2097
BsuRI	GGCC	6 cut(s)	190, 1063, 1193, 1323, 2535, 2668
BsuTUI	ATCGAT	1 cut(s)	139
BtgZI	GCGATG	2 cut(s)	100, 212
BtsCI	GGATG	6 cut(s)	286, 574, 808, 1694, 1797, 2314
BtsI	GCAGTG	2 cut(s)	1273, 1502
BtsIMutI	CAGTG	5 cut(s)	1273, 1502, 2148, 2436, 2561
BveI	ACCTGC	1 cut(s)	2050
Cac8I	GCNNGC	3 cut(s)	160, 918, 2553
CciI	TCATGA	2 cut(s)	2653, 2725
CfoI	GCGC	5 cut(s)	158, 496, 947, 1156, 2118
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	6 cut(s)	241, 300, 1000, 2533, 2667, 2909
ClaI	ATCGAT	1 cut(s)	139
CpoI	CGGWCCG	1 cut(s)	300
CseI	GACGC	1 cut(s)	151
CsiI	ACCWGGT	1 cut(s)	2640
Csp6I	GTAC	4 cut(s)	148, 657, 1901, 1999
CspAI	ACCGGT	1 cut(s)	55
CspI	CGGWCCG	1 cut(s)	300
CviQI	GTAC	4 cut(s)	148, 657, 1901, 1999
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	202, 390, 2073
EarI	CTCTTC	3 cut(s)	202, 390, 2073
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	4 cut(s)	1030, 2417, 2536, 2868
Eco147I	AGGCCT	1 cut(s)	1063
Eco24I	GRGCYC	2 cut(s)	699, 2868
Eco32I	GATATC	1 cut(s)	1655
Eco47I	GGWCC	4 cut(s)	241, 300, 1000, 2909
Eco47III	AGCGCT	1 cut(s)	946
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	2567, 2718, 2970
Eco81I	CCTNAGG	1 cut(s)	127
Eco88I	CYCGRG	3 cut(s)	78, 99, 675
EcoICRI	GAGCTC	1 cut(s)	697
EcoNI	CCTNNNNNAGG	1 cut(s)	1029
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoRI	GAATTC	1 cut(s)	1628
EcoRII	CCWGG	5 cut(s)	725, 1558, 1978, 2338, 2640
EcoRV	GATATC	1 cut(s)	1655
EcoT14I	CCWWGG	4 cut(s)	1030, 2417, 2536, 2868
EcoT22I	ATGCAT	2 cut(s)	1598, 2223
EcoT38I	GRGCYC	2 cut(s)	699, 2868
ErhI	CCWWGG	4 cut(s)	1030, 2417, 2536, 2868
FalI	AAGNNNNNCTT	6 cut(s)	1237, 1269, 1988, 2020, 2052, 2084
FauI	CCCGC	1 cut(s)	270
FauNDI	CATATG	2 cut(s)	1884, 2455
FbaI	TGATCA	1 cut(s)	3069
FblI	GTMKAC	4 cut(s)	52, 1479, 1589, 2164
Fnu4HI	GCNGC	5 cut(s)	112, 1164, 1925, 2053, 2742
FokI	GGATG	6 cut(s)	293, 581, 815, 1701, 1804, 2321
FriOI	GRGCYC	2 cut(s)	699, 2868
Fsp4HI	GCNGC	5 cut(s)	112, 1164, 1925, 2053, 2742
FspI	TGCGCA	1 cut(s)	1155
GlaI	GCGC	5 cut(s)	157, 495, 946, 1155, 2117
GluI	GCNGC	5 cut(s)	112, 1164, 1925, 2053, 2742
HaeII	RGCGCY	2 cut(s)	497, 948
HaeIII	GGCC	6 cut(s)	190, 1063, 1193, 1323, 2535, 2668
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	5 cut(s)	158, 496, 947, 1156, 2118
Hin6I	GCGC	5 cut(s)	156, 494, 945, 1154, 2116
HinP1I	GCGC	5 cut(s)	156, 494, 945, 1154, 2116
HincII	GTYRAC	2 cut(s)	75, 2165
HindII	GTYRAC	2 cut(s)	75, 2165
HindIII	AAGCTT	5 cut(s)	254, 1251, 2129, 2678, 2903
HphI	GGTGA	7 cut(s)	56, 691, 1382, 2198, 2365, 2569, 3079
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	5 cut(s)	29, 35, 207, 637, 2356
HpyCH4IV	ACGT	2 cut(s)	2800, 2887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	687, 822, 977, 1021, 1069, 1160, 1240
HpySE526I	ACGT	2 cut(s)	2800, 2887
HspAI	GCGC	5 cut(s)	156, 494, 945, 1154, 2116
Kpn2I	TCCGGA	2 cut(s)	8, 3229
Ksp22I	TGATCA	1 cut(s)	3069
LguI	GCTCTTC	1 cut(s)	2073
LmnI	GCTCC	6 cut(s)	82, 694, 878, 1729, 2258, 3241
Lsp1109I	GCAGC	4 cut(s)	1175, 1936, 2064, 2728
LweI	GCATC	8 cut(s)	123, 255, 294, 766, 1936, 2053, 2208, 2262
MabI	ACCWGGT	1 cut(s)	2640
MaeII	ACGT	2 cut(s)	2800, 2887
MaeIII	GTNAC	8 cut(s)	223, 781, 1268, 2186, 2353, 2434, 2557, 2770
MbiI	CCGCTC	1 cut(s)	1124
MfeI	CAATTG	1 cut(s)	1709
MflI	RGATCY	2 cut(s)	338, 671
MhlI	GDGCHC	6 cut(s)	699, 1391, 1802, 2868, 2893, 3039
MlsI	TGGCCA	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	6 cut(s)	111, 243, 1485, 2483, 2687, 3107
MmeI	TCCRAC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	2 cut(s)	1598, 2223
MroI	TCCGGA	2 cut(s)	8, 3229
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	190
MslI	CAYNNNNRTG	7 cut(s)	471, 485, 1261, 1317, 1668, 2730, 2799
Msp20I	TGGCCA	1 cut(s)	190
MspCI	CTTAAG	1 cut(s)	1364
MspR9I	CCNGG	9 cut(s)	239, 298, 727, 1560, 1833, 1980, 2340, 2531, 2642
MunI	CAATTG	1 cut(s)	1709
Mva1269I	GAATGC	2 cut(s)	452, 2531
MvaI	CCWGG	5 cut(s)	727, 1560, 1980, 2340, 2642
MvnI	CGCG	3 cut(s)	158, 787, 795
MwoI	GCNNNNNNNGC	7 cut(s)	687, 822, 977, 1021, 1069, 1160, 1240
NciI	CCSGG	4 cut(s)	239, 298, 1833, 2531
NdeI	CATATG	2 cut(s)	1884, 2455
NheI	GCTAGC	1 cut(s)	2551
NlaIV	GGNNCC	6 cut(s)	110, 242, 1023, 2260, 2462, 2534
NmuCI	GTSAC	7 cut(s)	223, 1268, 2186, 2353, 2434, 2557, 2770
NsbI	TGCGCA	1 cut(s)	1155
NsiI	ATGCAT	2 cut(s)	1598, 2223
NspI	RCATGY	3 cut(s)	327, 1596, 1600
NspV	TTCGAA	1 cut(s)	1626
OliI	CACNNNNGTG	2 cut(s)	1317, 2799
PaeR7I	CTCGAG	1 cut(s)	99
PagI	TCATGA	2 cut(s)	2653, 2725
PaqCI	CACCTGC	1 cut(s)	2050
PceI	AGGCCT	1 cut(s)	1063
PciI	ACATGT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	2073
PctI	GAATGC	2 cut(s)	452, 2531
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	7 cut(s)	346, 555, 713, 1413, 1675, 1703, 1828
PflMI	CCANNNNNTGG	1 cut(s)	2345
PfoI	TCCNGGA	1 cut(s)	1831
PinAI	ACCGGT	1 cut(s)	55
PkrI	GCNGC	5 cut(s)	113, 1165, 1926, 2054, 2743
PleI	GAGTC	6 cut(s)	110, 242, 1484, 2482, 2687, 3106
PpsI	GAGTC	6 cut(s)	110, 242, 1484, 2482, 2687, 3106
Ppu21I	YACGTR	1 cut(s)	2801
PpuMI	RGGWCCY	1 cut(s)	1000
PscI	ACATGT	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	1000
Psp6I	CCWGG	5 cut(s)	725, 1558, 1978, 2338, 2640
PspGI	CCWGG	5 cut(s)	725, 1558, 1978, 2338, 2640
PspN4I	GGNNCC	6 cut(s)	110, 242, 1023, 2260, 2462, 2534
PspPI	GGNCC	6 cut(s)	241, 300, 1000, 2533, 2667, 2909
PspPPI	RGGWCCY	1 cut(s)	1000
PspXI	VCTCGAGB	1 cut(s)	99
PsrI	GAACNNNNNNTAC	2 cut(s)	213, 245
PstI	CTGCAG	2 cut(s)	1744, 2054
PsuI	RGATCY	2 cut(s)	338, 671
RsaI	GTAC	4 cut(s)	149, 658, 1902, 2000
RsaNI	GTAC	4 cut(s)	148, 657, 1901, 1999
RseI	CAYNNNNRTG	7 cut(s)	471, 485, 1261, 1317, 1668, 2730, 2799
Rsr2I	CGGWCCG	1 cut(s)	300
RsrII	CGGWCCG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	699
SalI	GTCGAC	1 cut(s)	2163
SapI	GCTCTTC	1 cut(s)	2073
SatI	GCNGC	5 cut(s)	112, 1164, 1925, 2053, 2742
Sau96I	GGNCC	6 cut(s)	241, 300, 1000, 2533, 2667, 2909
ScaI	AGTACT	1 cut(s)	2000
SchI	GAGTC	6 cut(s)	111, 243, 1485, 2483, 2687, 3107
ScrFI	CCNGG	9 cut(s)	239, 298, 727, 1560, 1833, 1980, 2340, 2531, 2642
SduI	GDGCHC	6 cut(s)	699, 1391, 1802, 2868, 2893, 3039
SexAI	ACCWGGT	1 cut(s)	2640
SfaNI	GCATC	8 cut(s)	123, 255, 294, 766, 1936, 2053, 2208, 2262
SfcI	CTRYAG	3 cut(s)	1508, 1740, 2050
Sfr274I	CTCGAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	1626
SinI	GGWCC	4 cut(s)	241, 300, 1000, 2909
SlaI	CTCGAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	7 cut(s)	471, 485, 1261, 1317, 1668, 2730, 2799
SmlI	CTYRAG	4 cut(s)	99, 1016, 1331, 1364
SmoI	CTYRAG	4 cut(s)	99, 1016, 1331, 1364
SseBI	AGGCCT	1 cut(s)	1063
SsiI	CCGC	7 cut(s)	112, 182, 244, 277, 787, 1122, 2555
SspI	AATATT	4 cut(s)	994, 1106, 3030, 3257
SstI	GAGCTC	1 cut(s)	699
StuI	AGGCCT	1 cut(s)	1063
StyD4I	CCNGG	9 cut(s)	237, 296, 725, 1558, 1831, 1978, 2338, 2529, 2640
StyI	CCWWGG	4 cut(s)	1030, 2417, 2536, 2868
TaiI	ACGT	2 cut(s)	2803, 2890
TaqII	GACCGA	1 cut(s)	1509
TatI	WGTACW	2 cut(s)	1900, 1998
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	7 cut(s)	346, 555, 713, 1413, 1675, 1703, 1828
TscAI	CASTG	5 cut(s)	1273, 1509, 2155, 2443, 2568
TseFI	GTSAC	7 cut(s)	223, 1268, 2186, 2353, 2434, 2557, 2770
TseI	GCWGC	4 cut(s)	1163, 1924, 2052, 2741
Tsp45I	GTSAC	7 cut(s)	223, 1268, 2186, 2353, 2434, 2557, 2770
TspGWI	ACGGA	2 cut(s)	402, 1742
TspRI	CASTG	5 cut(s)	1273, 1509, 2155, 2443, 2568
Van91I	CCANNNNNTGG	1 cut(s)	2345
Vha464I	CTTAAG	1 cut(s)	1364
VneI	GTGCAC	1 cut(s)	1387
VpaK11BI	GGWCC	4 cut(s)	241, 300, 1000, 2909
XagI	CCTNNNNNAGG	1 cut(s)	1029
XapI	RAATTY	9 cut(s)	770, 1380, 1575, 1628, 2009, 2094, 2229, 2747, 3058
XbaI	TCTAGA	2 cut(s)	2683, 3017
XceI	RCATGY	3 cut(s)	327, 1596, 1600
XhoI	CTCGAG	1 cut(s)	99
XmaJI	CCTAGG	1 cut(s)	2417
XmiI	GTMKAC	4 cut(s)	52, 1479, 1589, 2164
XmnI	GAANNNNTTC	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	2000
Zsp2I	ATGCAT	2 cut(s)	1598, 2223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.