Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

85952243 .. 85956497

Gene Structure 4255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATTCGTATACACTTAAGTCCATGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCATGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGGTAAGTATAAAGGTGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACGCCCCAGCAAAAAATGATTTTCTATTTGAAAAGCGCCTTCAAAACTATATTTTCGATATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTCAACTAGAAAAGGTGCACAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGGTATGGAACTACTTTGTTTTGTTGTTCACATTACATTAACTATAACTTACTGCACCTCCCCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

271

Amino Acids

30.7

Weight (kDa)

8.52

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	27 - 146	1.3e-19	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	325
AfiI	CCNNNNNNNGG	2 cut(s)	236, 271
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	76, 198, 509, 521, 555, 651
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	4 cut(s)	175, 343, 457, 698
AluI	AGCT	4 cut(s)	175, 343, 457, 698
Alw21I	GWGCWC	2 cut(s)	345, 601
Alw44I	GTGCAC	1 cut(s)	597
AlwI	GGATC	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	446, 636
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	1 cut(s)	608
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	142, 516
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	303
AxyI	CCTNAGG	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	345, 601
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	2 cut(s)	209, 274
BciT130I	CCWGG	1 cut(s)	373
BfaI	CTAG	1 cut(s)	588
BfoI	RGCGCY	2 cut(s)	143, 517
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	42, 305
BmrFI	CCNGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 271
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	236, 271
BseMII	CTCAG	4 cut(s)	129, 201, 402, 638
BseNI	ACTGG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	620
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	784
BshFI	GGCC	2 cut(s)	448, 638
BsiHKAI	GWGCWC	2 cut(s)	345, 601
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	38, 348
BslI	CCNNNNNNNGG	2 cut(s)	236, 271
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	448, 638
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	345, 601
Bsp143I	GATC	1 cut(s)	317
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	448, 638
BspCNI	CTCAG	4 cut(s)	128, 202, 403, 637
BspLI	GGNNCC	2 cut(s)	42, 305
BspPI	GGATC	1 cut(s)	325
BspTI	CTTAAG	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	317
BssNAI	GTATAC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	163, 631
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	5 cut(s)	115, 210, 411, 624, 689
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	2 cut(s)	143, 517
BstHHI	GCGC	2 cut(s)	142, 516
BstKTI	GATC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	4 cut(s)	333, 454, 605, 685
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	2 cut(s)	57, 108
BstSCI	CCNGG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	317
BstZ17I	GTATAC	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	448, 638
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	2 cut(s)	142, 516
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	303
CviAII	CATG	6 cut(s)	25, 54, 105, 127, 634, 708
DdeI	CTNAG	5 cut(s)	115, 210, 411, 624, 689
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	6 cut(s)	28, 57, 108, 130, 637, 711
FalI	AAGNNNNNCTT	2 cut(s)	682, 714
FatI	CATG	6 cut(s)	24, 53, 104, 126, 633, 707
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	2 cut(s)	141, 515
GluI	GCNGC	1 cut(s)	609
GsaI	CCCAGC	1 cut(s)	488
HaeII	RGCGCY	2 cut(s)	143, 517
HaeIII	GGCC	2 cut(s)	448, 638
HapII	CCGG	2 cut(s)	38, 348
HhaI	GCGC	2 cut(s)	142, 516
Hin1II	CATG	6 cut(s)	28, 57, 108, 130, 637, 711
Hin6I	GCGC	2 cut(s)	140, 514
HinP1I	GCGC	2 cut(s)	140, 514
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	3 cut(s)	5, 201, 359
HpaII	CCGG	2 cut(s)	38, 348
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	6 cut(s)	12, 124, 225, 380, 599, 775
Hpy188I	TCNGA	3 cut(s)	118, 211, 627
Hpy188III	TCNNGA	5 cut(s)	198, 284, 296, 410, 555
Hpy8I	GTNNAC	6 cut(s)	12, 124, 225, 380, 599, 775
HpyAV	CCTTC	2 cut(s)	283, 527
HpyCH4III	ACNGT	2 cut(s)	163, 631
HpyCH4V	TGCA	8 cut(s)	85, 104, 180, 547, 599, 711, 727, 801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	333, 454, 605, 685
HpyF3I	CTNAG	5 cut(s)	115, 210, 411, 624, 689
Hsp92II	CATG	6 cut(s)	28, 57, 108, 130, 637, 711
HspAI	GCGC	2 cut(s)	140, 514
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	317
LmnI	GCTCC	2 cut(s)	46, 340
Lsp1109I	GCAGC	1 cut(s)	620
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	1 cut(s)	319
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	1 cut(s)	317
MboII	GAAGA	1 cut(s)	449
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	345, 601
MluCI	AATT	2 cut(s)	61, 573
MnlI	CCTC	8 cut(s)	180, 205, 213, 406, 438, 551, 678, 814
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	5 cut(s)	18, 60, 401, 663, 785
MslI	CAYNNNNRTG	3 cut(s)	117, 131, 706
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	2 cut(s)	38, 348
MspR9I	CCNGG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	333, 454, 605, 685
NaeI	GCCGGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	317
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	28, 57, 108, 130, 637, 711
NlaIV	GGNNCC	2 cut(s)	42, 305
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	2 cut(s)	57, 108
PceI	AGGCCT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	5, 201, 359
PkrI	GCNGC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	42, 305
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	317
RseI	CAYNNNNRTG	3 cut(s)	117, 131, 706
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	18, 60, 401, 663, 785
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	2 cut(s)	345, 601
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	3 cut(s)	117, 131, 706
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	61, 573
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	567
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	163, 631
TaqI	TCGA	2 cut(s)	49, 534
TasI	AATT	2 cut(s)	61, 573
TfiI	GAWTC	3 cut(s)	5, 201, 359
Tru1I	TTAA	5 cut(s)	18, 60, 401, 663, 785
Tru9I	TTAA	5 cut(s)	18, 60, 401, 663, 785
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	4 cut(s)	193, 372, 649, 690
TspRI	CASTG	1 cut(s)	718
Vha464I	CTTAAG	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	303
XceI	RCATGY	2 cut(s)	57, 108
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.