Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

1787682 .. 1790206

Gene Structure 2525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1029000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCAGATTTGCCTGCTCCCTTTCGATCATCGTTTAATTTTAGGTACTTCAATTCTCTGCAGAGCGAATGTTTTCCTGTTTGTTTCCACTCAGATACAAACATGGTTGTGTCAGCACCAACTGGAAGCGGTAAAACAGTCATCTTCGAGCTTTGCATTCTGAGGCTCCTTTCACGATTTCTCTCTGAGGATGGGAGGCTTGGTCGTACAAATGGAACTCTCAAAACAATCTATATAGCCCCATCAAAGGCTTTAGTCCAGGAGAAGGTTCGTGACTGGAACCAGAAGTTCGGGTCTTGGGGGATAACTTGCTTGGAGCTTACTGGAGATAATGAATCTTACAACATCAGGAATATACAGGAAGCAGACATTATATTAACCACTCCTGAGAAATTTGATGCAGTAACCAGGTATCGTGCAAAGGATGGTGGAATGAGCTTTTTCAGTGATATAGCACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCGGTTTTGGAGGCAATAGTTAGTAGAATAAAAATGCTTGCTCAGAACCCTGAATTAAAATCAAGCTCTCTGGCTCACGTACGTTTTCTGGCTGTGTCTGCCACCATTCCAAATATTGAGGACCTTGGTGAGATTTGCATTCATTGGTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

219

Amino Acids

24.54

Weight (kDa)

5.83

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	19 - 208	9e-32	DEAD/DEAH box helicase
ResIII	PF04851	30 - 168	4.1e-10	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	503
AciI	CCGC	2 cut(s)	129, 503
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	3 cut(s)	47, 208, 582
AfiI	CCNNNNNNNGG	2 cut(s)	247, 265
AgsI	TTSAA	2 cut(s)	52, 487
AjnI	CCWGG	2 cut(s)	258, 407
AluBI	AGCT	4 cut(s)	151, 319, 438, 567
AluI	AGCT	4 cut(s)	151, 319, 438, 567
AlwI	GGATC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	495
BccI	CCATC	3 cut(s)	185, 250, 419
BciT130I	CCWGG	2 cut(s)	260, 409
BfmI	CTRYAG	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	260, 409
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	167, 281
BmrFI	CCNGG	2 cut(s)	260, 409
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 265
Bse1I	ACTGG	3 cut(s)	127, 281, 328
BseBI	CCWGG	2 cut(s)	260, 409
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	196, 430
BseLI	CCNNNNNNNGG	2 cut(s)	247, 265
BseMII	CTCAG	5 cut(s)	105, 152, 177, 378, 557
BseNI	ACTGG	3 cut(s)	127, 281, 328
BsiWI	CGTACG	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	247, 265
BsmI	GAATGC	2 cut(s)	156, 639
Bsp143I	GATC	2 cut(s)	26, 490
BspACI	CCGC	2 cut(s)	129, 503
BspCNI	CTCAG	5 cut(s)	104, 153, 178, 379, 556
BspLI	GGNNCC	2 cut(s)	167, 281
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	127, 281, 328
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	2 cut(s)	26, 490
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	260, 409
Bst4CI	ACNGT	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	15, 540
BstDEI	CTNAG	5 cut(s)	91, 161, 186, 387, 543
BstF5I	GGATG	2 cut(s)	196, 430
BstKTI	GATC	2 cut(s)	29, 493
BstMBI	GATC	2 cut(s)	26, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	2 cut(s)	260, 409
BstSCI	CCNGG	2 cut(s)	258, 407
BstSFI	CTRYAG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	196, 430
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	15, 540
Cfr13I	GGNCC	1 cut(s)	622
CsiI	ACCWGGT	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	46, 207, 581
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	3 cut(s)	46, 207, 581
DdeI	CTNAG	5 cut(s)	91, 161, 186, 387, 543
DpnI	GATC	2 cut(s)	28, 492
DpnII	GATC	2 cut(s)	26, 490
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	258, 407
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	1 cut(s)	106
FaiI	YATR	6 cut(s)	104, 234, 236, 356, 374, 452
FatI	CATG	1 cut(s)	102
FokI	GGATG	2 cut(s)	203, 437
GsuI	CTGGAG	1 cut(s)	345
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	1 cut(s)	335
HphI	GGTGA	1 cut(s)	641
Hpy188I	TCNGA	6 cut(s)	7, 94, 162, 187, 546, 656
Hpy188III	TCNNGA	4 cut(s)	174, 272, 349, 386
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	579, 583
HpyCH4V	TGCA	5 cut(s)	61, 156, 401, 419, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	5 cut(s)	91, 161, 186, 387, 543
HpySE526I	ACGT	2 cut(s)	579, 583
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	26, 490
LmnI	GCTCC	4 cut(s)	22, 171, 316, 500
LweI	GCATC	1 cut(s)	388
MabI	ACCWGGT	1 cut(s)	407
MaeII	ACGT	2 cut(s)	579, 583
MaeIII	GTNAC	2 cut(s)	272, 403
MalI	GATC	2 cut(s)	28, 492
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	2 cut(s)	26, 490
MboII	GAAGA	1 cut(s)	136
MluCI	AATT	4 cut(s)	37, 52, 392, 554
MnlI	CCTC	6 cut(s)	156, 181, 189, 504, 505, 613
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	36, 377, 557
MslI	CAYNNNNRTG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	260, 409
Mva1269I	GAATGC	2 cut(s)	156, 639
MvaI	CCWGG	2 cut(s)	260, 409
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	2 cut(s)	26, 490
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	167, 281
NmuCI	GTSAC	1 cut(s)	272
PctI	GAATGC	2 cut(s)	156, 639
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	335
Pfl23II	CGTACG	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	580
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	258, 407
PspGI	CCWGG	2 cut(s)	258, 407
PspLI	CGTACG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	167, 281
PspPI	GGNCC	1 cut(s)	622
PspPPI	RGGWCCY	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	63
RsaI	GTAC	3 cut(s)	47, 208, 582
RsaNI	GTAC	3 cut(s)	46, 207, 581
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	36, 377, 557
Sau3AI	GATC	2 cut(s)	26, 490
Sau96I	GGNCC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	260, 409
SexAI	ACCWGGT	1 cut(s)	407
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	37, 52, 392, 554
SsiI	CCGC	2 cut(s)	129, 503
SspI	AATATT	1 cut(s)	616
StyD4I	CCNGG	2 cut(s)	258, 407
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	582, 586
TaqI	TCGA	2 cut(s)	25, 147
TasI	AATT	4 cut(s)	37, 52, 392, 554
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	36, 377, 557
Tru9I	TTAA	3 cut(s)	36, 377, 557
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	348, 467, 486, 632
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.