Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

81096637 .. 81105526

Gene Structure 8890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3168 bp

ATGGATTCGTATACACTTAAGTCTGTGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGTTTTCCTACTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCACCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATAGCACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGGCTGCAACCATCCCAAATATTGAGGACCTTGCGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGTTGGTTATCACAACGGCGGCCTTTGCCTCAAGGATCGTAATCTCGTTGAAAGTCTTTTCCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCTCACGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCACTTGTATATGTGTGGGAGGGCAAGTCGGCCACCTTTTGATGATACAGGAATGGTTATAATAATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGGAAAGTGATTTCCAATGATCGTATAGGAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACCGATGAAGATGGTTTTCTGTTGAAACCACTAGTACCTGGGAGGCTGATGACGAAGTACTATTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATCGTATTCAAACCAGAGAAGAAAAGATATTTTTTTGGCTAATGACTGCTTGACTGGTGATCCTTCGGTTCATGATTTATCCCTTACCCAGGATATGAACTCCATATGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAGAATTACAAAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATGCTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCAAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGAGAATTGAGATAGTCACTGGTCGAAAATACCCATATGGGAACCATATAAAGGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGAGTTGATGAATTCTCGAGCCCCTATAGCGCAACAGTTCTCCTGTCAAATCCCCAACAAGGAAAGCTGACTGAGCTTATCTTAATGAAGAAAAGCAATTTAAGTGCAAATAACAAACGAGGAAAAAAAGCACCCTCTCTTCCTCTACCTGAGGAAGTATGTATCACAGAAGATGATACTTATGAAGGCCCAAGTGAAGTGCTTCCAAACTCGACGAAATCCAAAAGGGTAGATGGTCCCATGCCCAGTTTCAAGCTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCGACAAAGTACATGAAGATGAGATTGCTGCCAAAGTTCAAATTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCATCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCCAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACATCTTTCTAGTATCAAAAATCATCCAACTCCCAGAAGCTCAGCTGCCCTGAACGTCATAGATGGCAGAGCTGGGCCTCATACTGACCCTGATGTCAAACCTCTAACAGGAGAAACAATATTTGAGCACATACGCACAAAAGCTAAGAATTTTCCAGTAATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCATGGATATGACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTATCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGAAGCTCCTGCAACCCTTATGGAATATTGAATGCTTCTCCCGGAGGTTTAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCCAAAGCGACCTGCAGATCCAGCAAGCACCGTGGAGAATACTAGGAAGAAACATCAACACTCTCCAATTGTACCACCAAGGCACTGCTCGTTGACAGCAGTTGGAAGATCCAGAGAAGTAGAAACATTTCTTGGGTTTGGGAGTGTCTTTTACTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

1056

Amino Acids

118.34

Weight (kDa)

7.88

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	27 - 216	3e-28	DEAD/DEAH box helicase
ResIII	PF04851	39 - 173	2.8e-08	Type III restriction enzyme, res subunit
WHD_SNRNP200	PF23445	338 - 417	9.6e-13	Winged Helix-turn-helix domain
Sec63	PF02889	429 - 472	1.7e-06	Sec63 Brl domain
Sec63	PF02889	474 - 670	3.3e-19	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	947
AarI	CACCTGC	1 cut(s)	1360
AasI	GACNNNNNNGTC	1 cut(s)	2663
Acc36I	ACCTGC	2 cut(s)	1360, 3025
AccB1I	GGYRCC	1 cut(s)	667
AccB7I	CCANNNNNTGG	1 cut(s)	1670
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	433, 441
AccIII	TCCGGA	1 cut(s)	2891
AciI	CCGC	4 cut(s)	433, 653, 753, 1880
AclWI	GGATC	7 cut(s)	325, 509, 777, 1463, 1733, 3017, 3108
AcoI	YGGCCR	1 cut(s)	917
AcsI	RAATTY	7 cut(s)	416, 813, 1319, 1404, 1553, 2000, 2719
AcuI	CTGAAG	3 cut(s)	1892, 2283, 2535
AfaI	GTAC	5 cut(s)	1212, 1287, 1310, 2289, 3078
AfeI	AGCGCT	1 cut(s)	592
AflII	CTTAAG	2 cut(s)	17, 797
AhlI	ACTAGT	1 cut(s)	1282
AjnI	CCWGG	5 cut(s)	371, 1288, 1497, 1663, 1965
AjuI	GAANNNNNNNTTGG	2 cut(s)	3120, 3152
AleI	CACNNNNGTG	1 cut(s)	2364
AloI	GAACNNNNNNTCC	2 cut(s)	2478, 2510
Alw21I	GWGCWC	5 cut(s)	345, 824, 1112, 2458, 2700
Alw26I	GTCTC	4 cut(s)	1078, 1715, 1806, 1815
Alw44I	GTGCAC	1 cut(s)	820
AlwI	GGATC	7 cut(s)	325, 509, 777, 1463, 1733, 3017, 3108
Ama87I	CYCGRG	2 cut(s)	321, 2005
Aor13HI	TCCGGA	1 cut(s)	2891
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	5 cut(s)	707, 754, 917, 2176, 2645
ApaLI	GTGCAC	1 cut(s)	820
ApeKI	GCWGC	5 cut(s)	623, 1234, 1362, 2306, 2615
ApoI	RAATTY	7 cut(s)	416, 813, 1319, 1404, 1553, 2000, 2719
Asp700I	GAANNNNTTC	3 cut(s)	96, 2190, 3132
AspA2I	CCTAGG	1 cut(s)	1742
AspLEI	GCGC	2 cut(s)	593, 2021
AspS9I	GGNCC	7 cut(s)	303, 646, 1251, 2177, 2225, 2474, 2645
AsuC2I	CCSGG	3 cut(s)	1143, 1856, 2934
AsuHPI	GGTGA	5 cut(s)	337, 815, 1478, 1690, 1894
AsuNHI	GCTAGC	1 cut(s)	1876
AvaI	CYCGRG	2 cut(s)	321, 2005
AvaII	GGWCC	5 cut(s)	303, 646, 1251, 2225, 2474
AvrII	CCTAGG	1 cut(s)	1742
AxyI	CCTNAGG	1 cut(s)	2139
BaeGI	GKGCMC	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	3 cut(s)	345, 2012, 2433
BauI	CACGAG	2 cut(s)	519, 2457
BbsI	GAAGAC	1 cut(s)	2262
Bbv12I	GWGCWC	5 cut(s)	345, 824, 1112, 2458, 2700
BbvCI	CCTCAGC	2 cut(s)	1398, 1731
BbvI	GCAGC	5 cut(s)	610, 1246, 1374, 2293, 2602
BceAI	ACGGC	3 cut(s)	766, 1377, 2810
BcgI	CGANNNNNNTGC	2 cut(s)	1680, 1714
BciT130I	CCWGG	5 cut(s)	373, 1290, 1499, 1665, 1967
BcnI	CCSGG	3 cut(s)	1143, 1856, 2934
BcoDI	GTCTC	4 cut(s)	1078, 1715, 1806, 1815
BcuI	ACTAGT	1 cut(s)	1282
BfmI	CTRYAG	5 cut(s)	1050, 1360, 1528, 2014, 3018
BfoI	RGCGCY	1 cut(s)	594
BfrI	CTTAAG	2 cut(s)	17, 797
BfuAI	ACCTGC	2 cut(s)	1360, 3025
BisI	GCNGC	6 cut(s)	624, 754, 1235, 1363, 2307, 2616
BlnI	CCTAGG	1 cut(s)	1742
BlpI	GCTNAGC	1 cut(s)	2611
BlsI	GCNGC	6 cut(s)	625, 755, 1236, 1364, 2308, 2617
BmcAI	AGTACT	1 cut(s)	1310
Bme1390I	CCNGG	8 cut(s)	373, 1143, 1290, 1499, 1665, 1856, 1967, 2934
Bme18I	GGWCC	5 cut(s)	303, 646, 1251, 2225, 2474
BmeT110I	CYCGRG	2 cut(s)	321, 2005
BmgT120I	GGNCC	7 cut(s)	303, 646, 1251, 2177, 2225, 2474, 2645
BmiI	GGNNCC	7 cut(s)	42, 305, 669, 1585, 1787, 2227, 2953
BmrFI	CCNGG	8 cut(s)	373, 1143, 1290, 1499, 1665, 1856, 1967, 2934
BmrI	ACTGGG	1 cut(s)	2229
BmsI	GCATC	5 cut(s)	412, 1246, 1363, 1532, 1587
BmtI	GCTAGC	1 cut(s)	1880
BmuI	ACTGGG	1 cut(s)	2229
BpiI	GAAGAC	1 cut(s)	2262
BplI	GAGNNNNNCTC	2 cut(s)	2943, 2975
Bpu10I	CCTNAGC	2 cut(s)	1398, 1731
Bpu1102I	GCTNAGC	1 cut(s)	2611
BpuEI	CTTGAG	2 cut(s)	647, 749
BpuMI	CCSGG	3 cut(s)	1143, 1856, 2934
BsaAI	YACGTR	1 cut(s)	2366
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	9 cut(s)	676, 1289, 1497, 1664, 1742, 1855, 2433, 3036, 3083
BsaWI	WCCGGW	3 cut(s)	347, 2476, 2891
BsaXI	ACNNNNNCTCC	8 cut(s)	898, 928, 1893, 1923, 2478, 2508, 2744, 2774
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	5 cut(s)	151, 1468, 1768, 2235, 2726
Bse21I	CCTNAGG	1 cut(s)	2139
Bse3DI	GCAATG	1 cut(s)	2953
Bse8I	GATNNNNATC	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	2891
BseBI	CCWGG	5 cut(s)	373, 1290, 1499, 1665, 1967
BseDI	CCNNGG	9 cut(s)	676, 1289, 1497, 1664, 1742, 1855, 2433, 3036, 3083
BseGI	GGATG	7 cut(s)	220, 454, 630, 1004, 1107, 1639, 2593
BseJI	GATNNNNATC	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	2953
BseMII	CTCAG	9 cut(s)	129, 201, 402, 1389, 1722, 2052, 2130, 2625, 2748
BseNI	ACTGG	5 cut(s)	151, 1468, 1768, 2235, 2726
BseRI	GAGGAG	1 cut(s)	2765
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	5 cut(s)	610, 1246, 1374, 2293, 2602
BseYI	CCCAGC	1 cut(s)	2642
Bsh1236I	CGCG	2 cut(s)	433, 441
BshFI	GGCC	5 cut(s)	709, 756, 919, 2178, 2647
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	5 cut(s)	345, 824, 1112, 2458, 2700
BsiHKCI	CYCGRG	2 cut(s)	321, 2005
BsiSI	CCGG	7 cut(s)	38, 348, 1143, 1855, 2477, 2892, 2934
BslFI	GGGAC	1 cut(s)	2211
BsmAI	GTCTC	4 cut(s)	1078, 1715, 1806, 1815
BsmFI	GGGAC	1 cut(s)	2211
BsmI	GAATGC	2 cut(s)	1856, 2929
BsnI	GGCC	5 cut(s)	709, 756, 919, 2178, 2647
BsoBI	CYCGRG	2 cut(s)	321, 2005
Bsp1286I	GDGCHC	7 cut(s)	345, 824, 1112, 2012, 2433, 2458, 2700
Bsp13I	TCCGGA	1 cut(s)	2891
Bsp1407I	TGTACA	1 cut(s)	1210
Bsp143I	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
Bsp1720I	GCTNAGC	1 cut(s)	2611
BspACI	CCGC	4 cut(s)	433, 653, 753, 1880
BspANI	GGCC	5 cut(s)	709, 756, 919, 2178, 2647
BspCNI	CTCAG	9 cut(s)	128, 202, 403, 1390, 1723, 2053, 2131, 2624, 2749
BspEI	TCCGGA	1 cut(s)	2891
BspFNI	CGCG	2 cut(s)	433, 441
BspHI	TCATGA	2 cut(s)	1480, 1978
BspLI	GGNNCC	7 cut(s)	42, 305, 669, 1585, 1787, 2227, 2953
BspMAI	CTGCAG	3 cut(s)	1054, 1364, 3022
BspMI	ACCTGC	2 cut(s)	1360, 3025
BspOI	GCTAGC	1 cut(s)	1880
BspPI	GGATC	7 cut(s)	325, 509, 777, 1463, 1733, 3017, 3108
BspQI	GCTCTTC	1 cut(s)	1383
BspT107I	GGYRCC	1 cut(s)	667
BspTI	CTTAAG	2 cut(s)	17, 797
BsrDI	GCAATG	1 cut(s)	2953
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	1210
BsrI	ACTGG	5 cut(s)	151, 1468, 1768, 2235, 2726
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	9 cut(s)	676, 1289, 1497, 1664, 1742, 1855, 2433, 3036, 3083
BssMI	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
BssNAI	GTATAC	1 cut(s)	12
BssSI	CACGAG	2 cut(s)	519, 2457
BssT1I	CCWWGG	4 cut(s)	676, 1742, 2433, 3083
Bst1107I	GTATAC	1 cut(s)	12
Bst2BI	CACGAG	2 cut(s)	519, 2457
Bst2UI	CCWGG	5 cut(s)	373, 1290, 1499, 1665, 1967
Bst6I	CTCTTC	3 cut(s)	955, 1383, 2133
BstAFI	CTTAAG	2 cut(s)	17, 797
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	1210
BstBAI	YACGTR	1 cut(s)	2366
BstC8I	GCNNGC	5 cut(s)	39, 564, 1649, 1878, 3031
BstDSI	CCRYGG	1 cut(s)	3036
BstENI	CCTNNNNNAGG	3 cut(s)	675, 1496, 2676
BstF5I	GGATG	7 cut(s)	220, 454, 630, 1004, 1107, 1639, 2593
BstFNI	CGCG	2 cut(s)	433, 441
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	593, 2021
BstKTI	GATC	8 cut(s)	320, 517, 772, 1180, 1471, 1741, 3025, 3116
BstMAI	GTCTC	4 cut(s)	1078, 1715, 1806, 1815
BstMBI	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
BstNI	CCWGG	5 cut(s)	373, 1290, 1499, 1665, 1967
BstNSI	RCATGY	2 cut(s)	57, 2977
BstSCI	CCNGG	8 cut(s)	371, 1141, 1288, 1497, 1663, 1854, 1965, 2932
BstSFI	CTRYAG	5 cut(s)	1050, 1360, 1528, 2014, 3018
BstSLI	GKGCMC	1 cut(s)	824
BstUI	CGCG	2 cut(s)	433, 441
BstV1I	GCAGC	5 cut(s)	610, 1246, 1374, 2293, 2602
BstV2I	GAAGAC	1 cut(s)	2262
BstX2I	RGATCY	3 cut(s)	317, 3022, 3113
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	3 cut(s)	317, 3022, 3113
BstZ17I	GTATAC	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	2139
BsuRI	GGCC	5 cut(s)	709, 756, 919, 2178, 2647
BtgI	CCRYGG	1 cut(s)	3036
BtsCI	GGATG	7 cut(s)	220, 454, 630, 1004, 1107, 1639, 2593
BtsI	GCAGTG	1 cut(s)	3088
BtsIMutI	CAGTG	3 cut(s)	1761, 1886, 3088
BveI	ACCTGC	2 cut(s)	1360, 3025
Cac8I	GCNNGC	5 cut(s)	39, 564, 1649, 1878, 3031
CciI	TCATGA	2 cut(s)	1480, 1978
CfoI	GCGC	2 cut(s)	593, 2021
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	7 cut(s)	303, 646, 1251, 2177, 2225, 2474, 2645
CsiI	ACCWGGT	1 cut(s)	1965
Csp6I	GTAC	5 cut(s)	1211, 1286, 1309, 2288, 3077
CspCI	CAANNNNNGTGG	2 cut(s)	3018, 3053
CviQI	GTAC	5 cut(s)	1211, 1286, 1309, 2288, 3077
DpnI	GATC	8 cut(s)	319, 516, 771, 1179, 1470, 1740, 3024, 3115
DpnII	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
DrdI	GACNNNNNNGTC	1 cut(s)	2663
DseDI	GACNNNNNNGTC	1 cut(s)	2663
EaeI	YGGCCR	1 cut(s)	917
Eam1104I	CTCTTC	3 cut(s)	955, 1383, 2133
EarI	CTCTTC	3 cut(s)	955, 1383, 2133
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	4 cut(s)	676, 1742, 2433, 3083
Eco147I	AGGCCT	1 cut(s)	709
Eco24I	GRGCYC	3 cut(s)	345, 2012, 2433
Eco32I	GATATC	1 cut(s)	2989
Eco47I	GGWCC	5 cut(s)	303, 646, 1251, 2225, 2474
Eco47III	AGCGCT	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	3 cut(s)	1892, 2283, 2535
Eco81I	CCTNAGG	1 cut(s)	2139
Eco88I	CYCGRG	2 cut(s)	321, 2005
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	3 cut(s)	675, 1496, 2676
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	2000
EcoRII	CCWGG	5 cut(s)	371, 1288, 1497, 1663, 1965
EcoRV	GATATC	1 cut(s)	2989
EcoT14I	CCWWGG	4 cut(s)	676, 1742, 2433, 3083
EcoT22I	ATGCAT	1 cut(s)	1547
EcoT38I	GRGCYC	3 cut(s)	345, 2012, 2433
ErhI	CCWWGG	4 cut(s)	676, 1742, 2433, 3083
FalI	AAGNNNNNCTT	2 cut(s)	1362, 1394
FaqI	GGGAC	1 cut(s)	2211
FauNDI	CATATG	3 cut(s)	1194, 1514, 1780
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	6 cut(s)	624, 754, 1235, 1363, 2307, 2616
FokI	GGATG	7 cut(s)	227, 461, 617, 1011, 1114, 1646, 2580
FriOI	GRGCYC	3 cut(s)	345, 2012, 2433
Fsp4HI	GCNGC	6 cut(s)	624, 754, 1235, 1363, 2307, 2616
GlaI	GCGC	2 cut(s)	592, 2020
GluI	GCNGC	6 cut(s)	624, 754, 1235, 1363, 2307, 2616
GsaI	CCCAGC	1 cut(s)	2646
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	5 cut(s)	709, 756, 919, 2178, 2647
HapII	CCGG	7 cut(s)	38, 348, 1143, 1855, 2477, 2892, 2934
HhaI	GCGC	2 cut(s)	593, 2021
Hin6I	GCGC	2 cut(s)	591, 2019
HinP1I	GCGC	2 cut(s)	591, 2019
HincII	GTYRAC	1 cut(s)	3099
HindII	GTYRAC	1 cut(s)	3099
HindIII	AAGCTT	2 cut(s)	2243, 2468
HpaII	CCGG	7 cut(s)	38, 348, 1143, 1855, 2477, 2892, 2934
HphI	GGTGA	5 cut(s)	337, 815, 1478, 1690, 1894
Hpy166II	GTNNAC	8 cut(s)	12, 124, 225, 380, 822, 973, 1211, 3099
Hpy8I	GTNNAC	8 cut(s)	12, 124, 225, 380, 822, 973, 1211, 3099
Hpy99I	CGWCG	1 cut(s)	2206
HpyAV	CCTTC	3 cut(s)	283, 1482, 2168
HpyCH4IV	ACGT	3 cut(s)	2365, 2452, 2625
HpySE526I	ACGT	3 cut(s)	2365, 2452, 2625
HspAI	GCGC	2 cut(s)	591, 2019
Kpn2I	TCCGGA	1 cut(s)	2891
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
LguI	GCTCTTC	1 cut(s)	1383
LmnI	GCTCC	7 cut(s)	46, 340, 524, 1039, 1583, 2903, 2951
Lsp1109I	GCAGC	5 cut(s)	610, 1246, 1374, 2293, 2602
LweI	GCATC	5 cut(s)	412, 1246, 1363, 1532, 1587
MabI	ACCWGGT	1 cut(s)	1965
MaeII	ACGT	3 cut(s)	2365, 2452, 2625
MaeIII	GTNAC	6 cut(s)	427, 1678, 1759, 1882, 2335, 2969
MalI	GATC	8 cut(s)	319, 516, 771, 1179, 1470, 1740, 3024, 3115
MboI	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
MfeI	CAATTG	2 cut(s)	1019, 3072
MflI	RGATCY	3 cut(s)	317, 3022, 3113
MhlI	GDGCHC	7 cut(s)	345, 824, 1112, 2012, 2433, 2458, 2700
MlyI	GAGTC	3 cut(s)	1808, 2252, 2768
MmeI	TCCRAC	2 cut(s)	2621, 3088
Mph1103I	ATGCAT	1 cut(s)	1547
MroI	TCCGGA	1 cut(s)	2891
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	3 cut(s)	96, 2190, 3132
MslI	CAYNNNNRTG	6 cut(s)	117, 131, 978, 2295, 2364, 2816
MspA1I	CMGCKG	1 cut(s)	2615
MspCI	CTTAAG	2 cut(s)	17, 797
MspI	CCGG	7 cut(s)	38, 348, 1143, 1855, 2477, 2892, 2934
MspR9I	CCNGG	8 cut(s)	373, 1143, 1290, 1499, 1665, 1856, 1967, 2934
MunI	CAATTG	2 cut(s)	1019, 3072
Mva1269I	GAATGC	2 cut(s)	1856, 2929
MvaI	CCWGG	5 cut(s)	373, 1290, 1499, 1665, 1967
MvnI	CGCG	2 cut(s)	433, 441
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	1143, 1856, 2934
NdeI	CATATG	3 cut(s)	1194, 1514, 1780
NdeII	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
NgoMIV	GCCGGC	1 cut(s)	37
NheI	GCTAGC	1 cut(s)	1876
NlaIV	GGNNCC	7 cut(s)	42, 305, 669, 1585, 1787, 2227, 2953
NmuCI	GTSAC	4 cut(s)	1678, 1759, 1882, 2335
NsiI	ATGCAT	1 cut(s)	1547
NspI	RCATGY	2 cut(s)	57, 2977
OliI	CACNNNNGTG	1 cut(s)	2364
PaeR7I	CTCGAG	1 cut(s)	2005
PagI	TCATGA	2 cut(s)	1480, 1978
PaqCI	CACCTGC	1 cut(s)	1360
PceI	AGGCCT	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	1383
PctI	GAATGC	2 cut(s)	1856, 2929
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	3 cut(s)	96, 2190, 3132
PfeI	GAWTC	8 cut(s)	5, 201, 359, 846, 985, 1013, 1138, 3004
PflMI	CCANNNNNTGG	1 cut(s)	1670
PfoI	TCCNGGA	2 cut(s)	1141, 2932
PkrI	GCNGC	6 cut(s)	625, 755, 1236, 1364, 2308, 2617
PleI	GAGTC	3 cut(s)	1807, 2252, 2767
PpsI	GAGTC	3 cut(s)	1807, 2252, 2767
Ppu21I	YACGTR	1 cut(s)	2366
PpuMI	RGGWCCY	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	947
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	5 cut(s)	371, 1288, 1497, 1663, 1965
PspFI	CCCAGC	1 cut(s)	2642
PspGI	CCWGG	5 cut(s)	371, 1288, 1497, 1663, 1965
PspN4I	GGNNCC	7 cut(s)	42, 305, 669, 1585, 1787, 2227, 2953
PspPI	GGNCC	7 cut(s)	303, 646, 1251, 2177, 2225, 2474, 2645
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	3 cut(s)	1054, 1364, 3022
PsuI	RGATCY	3 cut(s)	317, 3022, 3113
PvuII	CAGCTG	1 cut(s)	2615
RsaI	GTAC	5 cut(s)	1212, 1287, 1310, 2289, 3078
RsaNI	GTAC	5 cut(s)	1211, 1286, 1309, 2288, 3077
RseI	CAYNNNNRTG	6 cut(s)	117, 131, 978, 2295, 2364, 2816
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	1383
SatI	GCNGC	6 cut(s)	624, 754, 1235, 1363, 2307, 2616
Sau3AI	GATC	8 cut(s)	317, 514, 769, 1177, 1468, 1738, 3022, 3113
Sau96I	GGNCC	7 cut(s)	303, 646, 1251, 2177, 2225, 2474, 2645
ScaI	AGTACT	1 cut(s)	1310
SchI	GAGTC	3 cut(s)	1808, 2252, 2768
ScrFI	CCNGG	8 cut(s)	373, 1143, 1290, 1499, 1665, 1856, 1967, 2934
SduI	GDGCHC	7 cut(s)	345, 824, 1112, 2012, 2433, 2458, 2700
SexAI	ACCWGGT	1 cut(s)	1965
SfaNI	GCATC	5 cut(s)	412, 1246, 1363, 1532, 1587
SfcI	CTRYAG	5 cut(s)	1050, 1360, 1528, 2014, 3018
Sfr274I	CTCGAG	1 cut(s)	2005
SinI	GGWCC	5 cut(s)	303, 646, 1251, 2225, 2474
SlaI	CTCGAG	1 cut(s)	2005
SmiMI	CAYNNNNRTG	6 cut(s)	117, 131, 978, 2295, 2364, 2816
SmlI	CTYRAG	5 cut(s)	17, 662, 764, 797, 2005
SmoI	CTYRAG	5 cut(s)	17, 662, 764, 797, 2005
SpeI	ACTAGT	1 cut(s)	1282
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	4 cut(s)	433, 653, 753, 1880
SspI	AATATT	3 cut(s)	640, 2691, 2919
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	8 cut(s)	371, 1141, 1288, 1497, 1663, 1854, 1965, 2932
StyI	CCWWGG	4 cut(s)	676, 1742, 2433, 3083
TaiI	ACGT	3 cut(s)	2368, 2455, 2628
TaqI	TCGA	8 cut(s)	49, 1095, 1595, 1700, 1768, 2006, 2201, 2985
TaqII	GACCGA	1 cut(s)	1268
TatI	WGTACW	3 cut(s)	1210, 1308, 2287
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	8 cut(s)	5, 201, 359, 846, 985, 1013, 1138, 3004
TscAI	CASTG	3 cut(s)	1768, 1893, 3095
TseFI	GTSAC	4 cut(s)	1678, 1759, 1882, 2335
TseI	GCWGC	5 cut(s)	623, 1234, 1362, 2306, 2615
Tsp45I	GTSAC	4 cut(s)	1678, 1759, 1882, 2335
TspGWI	ACGGA	2 cut(s)	858, 1052
TspRI	CASTG	3 cut(s)	1768, 1893, 3095
Van91I	CCANNNNNTGG	1 cut(s)	1670
Vha464I	CTTAAG	2 cut(s)	17, 797
VneI	GTGCAC	1 cut(s)	820
VpaK11BI	GGWCC	5 cut(s)	303, 646, 1251, 2225, 2474
XagI	CCTNNNNNAGG	3 cut(s)	675, 1496, 2676
XapI	RAATTY	7 cut(s)	416, 813, 1319, 1404, 1553, 2000, 2719
XbaI	TCTAGA	1 cut(s)	2248
XceI	RCATGY	2 cut(s)	57, 2977
XhoI	CTCGAG	1 cut(s)	2005
XmaJI	CCTAGG	1 cut(s)	1742
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	3 cut(s)	96, 2190, 3132
ZrmI	AGTACT	1 cut(s)	1310
Zsp2I	ATGCAT	1 cut(s)	1547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.