Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

89015070 .. 89016430

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG664700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATACTTATGAAGGCCCAAGTCAAGTGCTTCCAAAGTCGACGAAATCCAAAAGGGCCCAGTTTCAAGCTTCTAGATAAAGACTCTGAAGAAGATGAGGTTGCCGACAAAGTTCATGAAGATGAGTTTGCTGCCAAAGTTCAAACTGATGACAAATTAAGTTGTGACACAACAAACAAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGATTCTGGAAGAATTAGAATGGAATAAAGTTCCAAGGCGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGTACAACATCTTTCTAGTATCAAAACTCATCCAACTCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGCTGGGCCTCATACTGACCCTGATGTCAAACCTCTAACAGGAGAAACAATATTCGAGCACATGCGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGTGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAACAAAACCAGATGAGGTTATCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGAAGCTCCTGCAATCCCTATGGAATATTGAATGCTTCTCCCAGAGGTTCAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCCGAAGCGACCTGCAGATCCAGCAAGCACTATGGAGAATACTAGGAAGAAACATCAACACTCTCCAATTGTACCACCAAGGCACTGCTCGTTGACAGCAGTTGGAAAATCCAGAGAAGTAGAAACATTTCTTGGGTTTGAGAGTGTCTTTTCCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

306

Amino Acids

34.15

Weight (kDa)

8.69

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
Acc16I	TGCGCA	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	644
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	108, 285
AfaI	GTAC	2 cut(s)	321, 831
AfiI	CCNNNNNNNGG	2 cut(s)	233, 431
AgsI	TTSAA	5 cut(s)	67, 143, 676, 696, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	873, 905
AluBI	AGCT	7 cut(s)	70, 220, 363, 368, 395, 467, 651
AluI	AGCT	7 cut(s)	70, 220, 363, 368, 395, 467, 651
Alw21I	GWGCWC	2 cut(s)	208, 453
AlwI	GGATC	1 cut(s)	770
Aor13HI	TCCGGA	1 cut(s)	644
AoxI	GGCC	3 cut(s)	15, 56, 398
ApaI	GGGCCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	131, 368
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	5 cut(s)	16, 56, 57, 224, 398
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	208, 453
BbvI	GCAGC	2 cut(s)	118, 355
BccI	CCATC	3 cut(s)	304, 380, 739
BceAI	ACGGC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	483
BfaI	CTAG	3 cut(s)	74, 333, 801
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	2 cut(s)	132, 369
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	2 cut(s)	133, 370
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	5 cut(s)	16, 56, 57, 224, 398
BmiI	GGNNCC	2 cut(s)	58, 706
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
Bpu1102I	GCTNAGC	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	183, 275, 836
BsaWI	WCCGGW	3 cut(s)	226, 478, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 431
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	706
BseAI	TCCGGA	1 cut(s)	644
BseDI	CCNNGG	3 cut(s)	183, 275, 836
BseGI	GGATG	2 cut(s)	346, 391
BseLI	CCNNNNNNNGG	2 cut(s)	233, 431
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	2 cut(s)	378, 501
BseNI	ACTGG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	118, 355
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	3 cut(s)	17, 58, 400
BsiHKAI	GWGCWC	2 cut(s)	208, 453
BsiSI	CCGG	3 cut(s)	227, 479, 645
BslI	CCNNNNNNNGG	2 cut(s)	233, 431
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	3 cut(s)	17, 58, 400
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	60, 208, 453
Bsp13I	TCCGGA	1 cut(s)	644
Bsp143I	GATC	2 cut(s)	483, 775
Bsp1720I	GCTNAGC	1 cut(s)	364
BspANI	GGCC	3 cut(s)	17, 58, 400
BspCNI	CTCAG	2 cut(s)	377, 502
BspEI	TCCGGA	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	58, 706
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	183, 275, 836
BssMI	GATC	2 cut(s)	483, 775
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	3 cut(s)	183, 275, 836
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	784
BstDEI	CTNAG	3 cut(s)	364, 468, 510
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	346, 391
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	486, 778
BstMBI	GATC	2 cut(s)	483, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	779
BstNSI	RCATGY	2 cut(s)	457, 730
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	118, 355
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	17, 58, 400
BtsCI	GGATG	2 cut(s)	346, 391
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	784
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	5 cut(s)	16, 56, 57, 224, 398
Csp6I	GTAC	2 cut(s)	320, 830
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	6 cut(s)	116, 382, 454, 565, 727, 748
CviQI	GTAC	2 cut(s)	320, 830
DdeI	CTNAG	3 cut(s)	364, 468, 510
DpnI	GATC	2 cut(s)	485, 777
DpnII	GATC	2 cut(s)	483, 775
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
Eco130I	CCWWGG	3 cut(s)	183, 275, 836
Eco24I	GRGCYC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	108, 285
EcoNI	CCTNNNNNAGG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	3 cut(s)	183, 275, 836
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	3 cut(s)	183, 275, 836
FaeI	CATG	6 cut(s)	119, 385, 457, 568, 730, 751
FatI	CATG	6 cut(s)	115, 381, 453, 564, 726, 747
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	132, 369
FokI	GGATG	2 cut(s)	333, 398
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	132, 369
FspAI	RTGCGCAY	1 cut(s)	458
FspBI	CTAG	3 cut(s)	74, 333, 801
FspI	TGCGCA	1 cut(s)	458
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	2 cut(s)	132, 369
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	17, 58, 400
HapII	CCGG	3 cut(s)	227, 479, 645
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	6 cut(s)	119, 385, 457, 568, 730, 751
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	2 cut(s)	41, 852
HindII	GTYRAC	2 cut(s)	41, 852
HindIII	AAGCTT	2 cut(s)	68, 218
HinfI	GANTC	4 cut(s)	83, 244, 512, 757
HpaII	CCGG	3 cut(s)	227, 479, 645
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	41, 852
Hpy188I	TCNGA	5 cut(s)	88, 304, 614, 762, 920
Hpy188III	TCNNGA	8 cut(s)	74, 116, 209, 248, 523, 645, 754, 870
Hpy8I	GTNNAC	2 cut(s)	41, 852
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	202, 378
HpyCH4V	TGCA	2 cut(s)	657, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	779
HpyF3I	CTNAG	3 cut(s)	364, 468, 510
HpySE526I	ACGT	2 cut(s)	202, 378
Hsp92II	CATG	6 cut(s)	119, 385, 457, 568, 730, 751
HspAI	GCGC	1 cut(s)	457
Kpn2I	TCCGGA	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	483, 775
LmnI	GCTCC	2 cut(s)	656, 704
Lsp1109I	GCAGC	2 cut(s)	118, 355
MaeI	CTAG	3 cut(s)	74, 333, 801
MaeII	ACGT	2 cut(s)	202, 378
MaeIII	GTNAC	2 cut(s)	164, 722
MalI	GATC	2 cut(s)	485, 777
MboI	GATC	2 cut(s)	483, 775
MboII	GAAGA	7 cut(s)	101, 104, 131, 226, 263, 291, 817
MfeI	CAATTG	1 cut(s)	825
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	3 cut(s)	60, 208, 453
MluCI	AATT	5 cut(s)	155, 188, 254, 472, 825
MlyI	GAGTC	2 cut(s)	77, 521
MmeI	TCCRAC	2 cut(s)	374, 841
MnlI	CCTC	7 cut(s)	91, 411, 435, 499, 598, 627, 683
MroI	TCCGGA	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	3 cut(s)	158, 309, 518
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	227, 479, 645
MunI	CAATTG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	682
MwoI	GCNNNNNNNGC	1 cut(s)	779
NdeII	GATC	2 cut(s)	483, 775
NlaIII	CATG	6 cut(s)	119, 385, 457, 568, 730, 751
NlaIV	GGNNCC	2 cut(s)	58, 706
NmuCI	GTSAC	1 cut(s)	164
NsbI	TGCGCA	1 cut(s)	458
NspI	RCATGY	2 cut(s)	457, 730
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	244, 757
PkrI	GCNGC	2 cut(s)	133, 370
PleI	GAGTC	2 cut(s)	77, 520
PpsI	GAGTC	2 cut(s)	77, 520
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	58, 706
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	5 cut(s)	16, 56, 57, 224, 398
PstI	CTGCAG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	321, 831
RsaNI	GTAC	2 cut(s)	320, 830
RseI	CAYNNNNRTG	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	158, 309, 518
SatI	GCNGC	2 cut(s)	132, 369
Sau3AI	GATC	2 cut(s)	483, 775
Sau96I	GGNCC	5 cut(s)	16, 56, 57, 224, 398
SchI	GAGTC	2 cut(s)	77, 521
SduI	GDGCHC	3 cut(s)	60, 208, 453
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	5 cut(s)	155, 188, 254, 472, 825
SspI	AATATT	2 cut(s)	444, 672
SspMI	CTAG	3 cut(s)	74, 333, 801
StyI	CCWWGG	3 cut(s)	183, 275, 836
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	205, 381
TaqI	TCGA	3 cut(s)	40, 447, 738
TasI	AATT	5 cut(s)	155, 188, 254, 472, 825
TatI	WGTACW	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	244, 757
Tru1I	TTAA	3 cut(s)	158, 309, 518
Tru9I	TTAA	3 cut(s)	158, 309, 518
TscAI	CASTG	1 cut(s)	848
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	131, 368
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	26, 104, 132
TspRI	CASTG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	429
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	2 cut(s)	457, 730
XmiI	GTMKAC	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	3 cut(s)	74, 333, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.