Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

78776243 .. 78793973

Gene Structure 17731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG610500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGGTTGAAATAGTTACAAGTATAGAAGAATATTGTCGCGATTGCTATGATGAAAATCTGAATCTCAATAGCGAAGCATTTGTGGAAATGATGGTTGTTGATGGTTGCTTTATTATTGAATTCTATCGCGGAATGGTAGGAGAGTTTTTCACCATGGAAAATATGCTTCTGCATGCAATCGAAGGCCCAGACTTCCCTCAGTTAGTAGCTGCATCTGACTTGCTTCTACTAGAAAACCAGCTGCCTTGGGGAGTTGTTGAATGTTTATTCGAACTCACAAAGGAACCCAATCAAGAACGTTCTTGCAACTCTCTGACAGAGCTTTGTGGTAGAGTGTGGAGGGATCCGATTGAGACTGTAGTTTGTGGTAGACCGCTTGGGATTGTAGAGGAGAAATCGAGAAGCCGACATCTACTTGACACTTGGCGACTCTTCTCATCTGGACCAGACCATAGATTCCAGACCTCTCTACTGCGGCCCCGACCTCTTCACCATAATCGACCTCTGTATCGTTCTTTCACTCTTCACGCGCACGCGCTTAGATTAACCCGATCGGTTTTCAGATCGACGACCGGTACCGGAATTTCATCTTCAATCCAGGAAACGGGTTCAAGCATGGATTCGTATACACTTAAGTCCATGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGTACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATAGAACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGGTCCTTGCGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACTCCCCAGCAAAAAATGATTTCTATTTGAAAAGCACCTTCAAAACTATATTTTCGATATCCTTATGCAATATTCAAGAGGGAAAGAACAGCGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGTAATCTCATTGAAAGTCTTTTCCTTAAGGGTGATGTTCAAATTCCGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTTGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGATGTGTGGGAGGGAAGGTCGCCCACCTTTTGATGATACAGGAATGGTTATAATCATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAACCACTAGAACCTGGGAGGCTGATGACGAAGTACTACTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGACAAAGGGAAGCGAAAAAAGCGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGACTGGTGATCCATCGGTTCATGATTTATCCCTTACCCAGGATATGAACTCCATGTGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAAAATTACAGAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAGGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGATAATTGAGATGGTCACTGGTCGAAAATACCCATATGGGAACCACATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTTTGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGCCTGAGGTGGTTTGGTAATCATCCTGTTTCCTCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

987

Amino Acids

112.51

Weight (kDa)

7.68

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	2 - 148	7.7e-26	Plant protein of unknown function
DEAD	PF00270	232 - 419	1.6e-29	DEAD/DEAH box helicase
ResIII	PF04851	243 - 378	3.3e-08	Type III restriction enzyme, res subunit
WHD_SNRNP200	PF23445	613 - 692	4.7e-13	Winged Helix-turn-helix domain
Sec63	PF02889	702 - 976	1.3e-42	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1772
AarI	CACCTGC	1 cut(s)	2185
Acc36I	ACCTGC	1 cut(s)	2185
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	2 cut(s)	575, 1282
AccB7I	CCANNNNNTGG	1 cut(s)	2603
AccI	GTMKAC	4 cut(s)	370, 626, 1689, 2299
AccII	CGCG	6 cut(s)	39, 129, 530, 536, 1048, 1056
AciI	CCGC	6 cut(s)	129, 374, 475, 1048, 1268, 2813
AclI	AACGTT	1 cut(s)	298
AclWI	GGATC	7 cut(s)	338, 351, 940, 1124, 1554, 2396, 2666
AcsI	RAATTY	7 cut(s)	119, 582, 1031, 1590, 2144, 2229, 2486
AcuI	CTGAAG	1 cut(s)	2825
AfaI	GTAC	4 cut(s)	577, 919, 2037, 2135
AfeI	AGCGCT	1 cut(s)	1207
AfiI	CCNNNNNNNGG	7 cut(s)	604, 851, 886, 1292, 2224, 2431, 2603
AflII	CTTAAG	2 cut(s)	632, 1574
AgeI	ACCGGT	1 cut(s)	572
AjnI	CCWGG	6 cut(s)	597, 986, 2113, 2430, 2596, 2898
AleI	CACNNNNGTG	1 cut(s)	1527
Alw21I	GWGCWC	4 cut(s)	960, 1601, 1937, 2453
Alw26I	GTCTC	5 cut(s)	347, 1903, 2648, 2739, 2748
Alw44I	GTGCAC	1 cut(s)	1597
AlwI	GGATC	7 cut(s)	338, 351, 940, 1124, 1554, 2396, 2666
Ama87I	CYCGRG	1 cut(s)	936
Aor51HI	AGCGCT	1 cut(s)	1207
AoxI	GGCC	4 cut(s)	184, 476, 1322, 1531
ApaLI	GTGCAC	1 cut(s)	1597
ApeKI	GCWGC	4 cut(s)	209, 241, 2059, 2187
ApoI	RAATTY	7 cut(s)	119, 582, 1031, 1590, 2144, 2229, 2486
AsiGI	ACCGGT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	711
Asp718I	GGTACC	1 cut(s)	575
AspA2I	CCTAGG	1 cut(s)	2675
AspLEI	GCGC	5 cut(s)	532, 538, 757, 1208, 2253
AspS9I	GGNCC	4 cut(s)	185, 443, 477, 1261
AsuC2I	CCSGG	2 cut(s)	1968, 2789
AsuHPI	GGTGA	8 cut(s)	142, 482, 952, 1592, 2333, 2411, 2623, 2827
AsuII	TTCGAA	1 cut(s)	270
AsuNHI	GCTAGC	1 cut(s)	2809
AvaI	CYCGRG	1 cut(s)	936
AvaII	GGWCC	2 cut(s)	443, 1261
AvrII	CCTAGG	1 cut(s)	2675
AxyI	CCTNAGG	1 cut(s)	2927
BaeGI	GKGCMC	2 cut(s)	1601, 2626
BaeI	ACNNNNGTAYC	2 cut(s)	491, 524
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	2 cut(s)	575, 1282
BanII	GRGCYC	1 cut(s)	960
BauI	CACGAG	1 cut(s)	1134
Bbv12I	GWGCWC	4 cut(s)	960, 1601, 1937, 2453
BbvCI	CCTCAGC	2 cut(s)	2223, 2664
BbvI	GCAGC	4 cut(s)	196, 228, 2071, 2199
BceAI	ACGGC	1 cut(s)	2202
BcgI	CGANNNNNNTGC	2 cut(s)	2613, 2647
BciT130I	CCWGG	6 cut(s)	599, 988, 2115, 2432, 2598, 2900
BciVI	GTATCC	1 cut(s)	2232
BcnI	CCSGG	2 cut(s)	1968, 2789
BcoDI	GTCTC	5 cut(s)	347, 1903, 2648, 2739, 2748
BfaI	CTAG	8 cut(s)	230, 1229, 2024, 2108, 2660, 2676, 2810, 2826
BfmI	CTRYAG	5 cut(s)	357, 1718, 1875, 2185, 2461
BfoI	RGCGCY	2 cut(s)	758, 1209
BfrI	CTTAAG	2 cut(s)	632, 1574
BfuAI	ACCTGC	1 cut(s)	2185
BfuI	GTATCC	1 cut(s)	2232
BisI	GCNGC	5 cut(s)	210, 242, 476, 2060, 2188
BlnI	CCTAGG	1 cut(s)	2675
BlsI	GCNGC	5 cut(s)	211, 243, 477, 2061, 2189
BmcAI	AGTACT	1 cut(s)	2135
Bme1390I	CCNGG	8 cut(s)	599, 988, 1968, 2115, 2432, 2598, 2789, 2900
Bme18I	GGWCC	2 cut(s)	443, 1261
BmeT110I	CYCGRG	1 cut(s)	936
BmgT120I	GGNCC	4 cut(s)	185, 443, 477, 1261
BmiI	GGNNCC	8 cut(s)	285, 345, 479, 577, 657, 1284, 2518, 2720
BmrFI	CCNGG	8 cut(s)	599, 988, 1968, 2115, 2432, 2598, 2789, 2900
BmsI	GCATC	6 cut(s)	221, 1027, 2071, 2188, 2465, 2520
BmtI	GCTAGC	1 cut(s)	2813
Bpu10I	CCTNAGC	4 cut(s)	1454, 2223, 2246, 2664
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	1262, 1526
BpuMI	CCSGG	2 cut(s)	1968, 2789
BsaBI	GATNNNNATC	2 cut(s)	54, 1551
BsaJI	CCNNGG	9 cut(s)	153, 245, 639, 1291, 2114, 2430, 2597, 2675, 2788
BsaWI	WCCGGW	3 cut(s)	572, 578, 962
BsaXI	ACNNNNNCTCC	4 cut(s)	1723, 1753, 2826, 2856
Bsc4I	CCNNNNNNNGG	7 cut(s)	604, 851, 886, 1292, 2224, 2431, 2603
Bse118I	RCCGGY	2 cut(s)	572, 652
Bse1I	ACTGG	3 cut(s)	766, 2401, 2701
Bse21I	CCTNAGG	1 cut(s)	2927
Bse3DI	GCAATG	1 cut(s)	2260
Bse8I	GATNNNNATC	2 cut(s)	54, 1551
BseBI	CCWGG	6 cut(s)	599, 988, 2115, 2432, 2598, 2900
BseDI	CCNNGG	9 cut(s)	153, 245, 639, 1291, 2114, 2430, 2597, 2675, 2788
BseGI	GGATG	6 cut(s)	835, 1069, 1829, 1932, 2572, 2944
BseJI	GATNNNNATC	2 cut(s)	54, 1551
BseLI	CCNNNNNNNGG	7 cut(s)	604, 851, 886, 1292, 2224, 2431, 2603
BseMI	GCAATG	1 cut(s)	2260
BseMII	CTCAG	8 cut(s)	212, 744, 816, 1017, 2214, 2260, 2655, 2918
BseNI	ACTGG	3 cut(s)	766, 2401, 2701
BseRI	GAGGAG	2 cut(s)	404, 2529
BseSI	GKGCMC	2 cut(s)	1601, 2626
BseXI	GCAGC	4 cut(s)	196, 228, 2071, 2199
BseYI	CCCAGC	1 cut(s)	1360
Bsh1236I	CGCG	6 cut(s)	39, 129, 530, 536, 1048, 1056
Bsh1285I	CGRYCG	2 cut(s)	554, 573
BshFI	GGCC	4 cut(s)	186, 478, 1324, 1533
BshNI	GGYRCC	2 cut(s)	575, 1282
BshTI	ACCGGT	1 cut(s)	572
BsiEI	CGRYCG	2 cut(s)	554, 573
BsiHKAI	GWGCWC	4 cut(s)	960, 1601, 1937, 2453
BsiHKCI	CYCGRG	1 cut(s)	936
BsiSI	CCGG	6 cut(s)	573, 579, 653, 963, 1968, 2788
BslI	CCNNNNNNNGG	7 cut(s)	604, 851, 886, 1292, 2224, 2431, 2603
BsmAI	GTCTC	5 cut(s)	347, 1903, 2648, 2739, 2748
BsmI	GAATGC	2 cut(s)	713, 2789
BsnI	GGCC	4 cut(s)	186, 478, 1324, 1533
BsoBI	CYCGRG	1 cut(s)	936
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	5 cut(s)	960, 1601, 1937, 2453, 2626
Bsp1407I	TGTACA	1 cut(s)	2035
Bsp19I	CCATGG	2 cut(s)	153, 639
Bsp68I	TCGCGA	1 cut(s)	39
BspACI	CCGC	6 cut(s)	129, 374, 475, 1048, 1268, 2813
BspANI	GGCC	4 cut(s)	186, 478, 1324, 1533
BspCNI	CTCAG	8 cut(s)	211, 743, 817, 1018, 2215, 2259, 2656, 2919
BspFNI	CGCG	6 cut(s)	39, 129, 530, 536, 1048, 1056
BspHI	TCATGA	3 cut(s)	1776, 2413, 2911
BspLI	GGNNCC	8 cut(s)	285, 345, 479, 577, 657, 1284, 2518, 2720
BspMAI	CTGCAG	2 cut(s)	1879, 2189
BspMI	ACCTGC	1 cut(s)	2185
BspOI	GCTAGC	1 cut(s)	2813
BspPI	GGATC	7 cut(s)	338, 351, 940, 1124, 1554, 2396, 2666
BspQI	GCTCTTC	1 cut(s)	2208
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	2 cut(s)	575, 1282
BspTI	CTTAAG	2 cut(s)	632, 1574
BsrDI	GCAATG	1 cut(s)	2260
BsrFI	RCCGGY	2 cut(s)	572, 652
BsrGI	TGTACA	1 cut(s)	2035
BsrI	ACTGG	3 cut(s)	766, 2401, 2701
BssAI	RCCGGY	2 cut(s)	572, 652
BssECI	CCNNGG	9 cut(s)	153, 245, 639, 1291, 2114, 2430, 2597, 2675, 2788
BssNAI	GTATAC	1 cut(s)	627
BssSI	CACGAG	1 cut(s)	1134
BssT1I	CCWWGG	5 cut(s)	153, 245, 639, 1291, 2675
Bst1107I	GTATAC	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	1134
Bst2UI	CCWGG	6 cut(s)	599, 988, 2115, 2432, 2598, 2900
Bst4CI	ACNGT	8 cut(s)	358, 778, 1529, 1645, 1795, 1897, 2573, 2742
Bst6I	CTCTTC	5 cut(s)	437, 492, 528, 1780, 2208
BstAFI	CTTAAG	2 cut(s)	632, 1574
BstAPI	GCANNNNNTGC	1 cut(s)	948
BstAUI	TGTACA	1 cut(s)	2035
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	5 cut(s)	174, 534, 654, 1179, 2811
BstDSI	CCRYGG	2 cut(s)	153, 639
BstENI	CCTNNNNNAGG	2 cut(s)	1290, 2429
BstF5I	GGATG	6 cut(s)	835, 1069, 1829, 1932, 2572, 2944
BstFNI	CGCG	6 cut(s)	39, 129, 530, 536, 1048, 1056
BstH2I	RGCGCY	2 cut(s)	758, 1209
BstHHI	GCGC	5 cut(s)	532, 538, 757, 1208, 2253
BstMAI	GTCTC	5 cut(s)	347, 1903, 2648, 2739, 2748
BstMCI	CGRYCG	2 cut(s)	554, 573
BstMWI	GCNNNNNNNGC	7 cut(s)	948, 1083, 1238, 1282, 1330, 2341, 2457
BstNI	CCWGG	6 cut(s)	599, 988, 2115, 2432, 2598, 2900
BstNSI	RCATGY	2 cut(s)	176, 672
BstSCI	CCNGG	8 cut(s)	597, 986, 1966, 2113, 2430, 2596, 2787, 2898
BstSFI	CTRYAG	5 cut(s)	357, 1718, 1875, 2185, 2461
BstSLI	GKGCMC	2 cut(s)	1601, 2626
BstUI	CGCG	6 cut(s)	39, 129, 530, 536, 1048, 1056
BstV1I	GCAGC	4 cut(s)	196, 228, 2071, 2199
BstX2I	RGATCY	2 cut(s)	343, 932
BstXI	CCANNNNNNTGG	1 cut(s)	929
BstYI	RGATCY	2 cut(s)	343, 932
BstZ17I	GTATAC	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	2927
BsuI	GTATCC	1 cut(s)	2232
BsuRI	GGCC	4 cut(s)	186, 478, 1324, 1533
BtgI	CCRYGG	2 cut(s)	153, 639
BtsCI	GGATG	6 cut(s)	835, 1069, 1829, 1932, 2572, 2944
BtsI	GCAGTG	2 cut(s)	1483, 1712
BtsIMutI	CAGTG	5 cut(s)	1483, 1712, 2283, 2694, 2819
BtuMI	TCGCGA	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	2185
Cac8I	GCNNGC	5 cut(s)	174, 534, 654, 1179, 2811
CciI	TCATGA	3 cut(s)	1776, 2413, 2911
CfoI	GCGC	5 cut(s)	532, 538, 757, 1208, 2253
Cfr10I	RCCGGY	2 cut(s)	572, 652
Cfr13I	GGNCC	4 cut(s)	185, 443, 477, 1261
CsiI	ACCWGGT	1 cut(s)	2898
Csp6I	GTAC	4 cut(s)	576, 918, 2036, 2134
CspAI	ACCGGT	1 cut(s)	572
CviQI	GTAC	4 cut(s)	576, 918, 2036, 2134
Eam1104I	CTCTTC	5 cut(s)	437, 492, 528, 1780, 2208
EarI	CTCTTC	5 cut(s)	437, 492, 528, 1780, 2208
Ecl136II	GAGCTC	1 cut(s)	958
Eco130I	CCWWGG	5 cut(s)	153, 245, 639, 1291, 2675
Eco147I	AGGCCT	1 cut(s)	1324
Eco24I	GRGCYC	1 cut(s)	960
Eco32I	GATATC	1 cut(s)	1413
Eco47I	GGWCC	2 cut(s)	443, 1261
Eco47III	AGCGCT	1 cut(s)	1207
Eco53kI	GAGCTC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	2825
Eco81I	CCTNAGG	1 cut(s)	2927
Eco88I	CYCGRG	1 cut(s)	936
EcoICRI	GAGCTC	1 cut(s)	958
EcoNI	CCTNNNNNAGG	2 cut(s)	1290, 2429
EcoO109I	RGGNCCY	1 cut(s)	1261
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	6 cut(s)	597, 986, 2113, 2430, 2596, 2898
EcoRV	GATATC	1 cut(s)	1413
EcoT14I	CCWWGG	5 cut(s)	153, 245, 639, 1291, 2675
EcoT22I	ATGCAT	1 cut(s)	2480
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	5 cut(s)	153, 245, 639, 1291, 2675
FalI	AAGNNNNNCTT	6 cut(s)	1447, 1479, 2123, 2155, 2187, 2219
FauNDI	CATATG	2 cut(s)	2019, 2713
FblI	GTMKAC	4 cut(s)	370, 626, 1689, 2299
Fnu4HI	GCNGC	5 cut(s)	210, 242, 476, 2060, 2188
FokI	GGATG	6 cut(s)	842, 1076, 1836, 1939, 2579, 2931
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	5 cut(s)	210, 242, 476, 2060, 2188
FspBI	CTAG	8 cut(s)	230, 1229, 2024, 2108, 2660, 2676, 2810, 2826
GlaI	GCGC	5 cut(s)	531, 537, 756, 1207, 2252
GluI	GCNGC	5 cut(s)	210, 242, 476, 2060, 2188
GsaI	CCCAGC	1 cut(s)	1364
HaeII	RGCGCY	2 cut(s)	758, 1209
HaeIII	GGCC	4 cut(s)	186, 478, 1324, 1533
HapII	CCGG	6 cut(s)	573, 579, 653, 963, 1968, 2788
HhaI	GCGC	5 cut(s)	532, 538, 757, 1208, 2253
Hin6I	GCGC	5 cut(s)	530, 536, 755, 1206, 2251
HinP1I	GCGC	5 cut(s)	530, 536, 755, 1206, 2251
HincII	GTYRAC	1 cut(s)	2300
HindII	GTYRAC	1 cut(s)	2300
HindIII	AAGCTT	2 cut(s)	1461, 2264
HpaII	CCGG	6 cut(s)	573, 579, 653, 963, 1968, 2788
HphI	GGTGA	8 cut(s)	142, 482, 952, 1592, 2333, 2411, 2623, 2827
Hpy99I	CGWCG	1 cut(s)	571
HpyAV	CCTTC	4 cut(s)	176, 898, 1402, 1730
HpyCH4III	ACNGT	8 cut(s)	358, 778, 1529, 1645, 1795, 1897, 2573, 2742
HpyCH4IV	ACGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	7 cut(s)	948, 1083, 1238, 1282, 1330, 2341, 2457
HpySE526I	ACGT	1 cut(s)	298
HspAI	GCGC	5 cut(s)	530, 536, 755, 1206, 2251
KpnI	GGTACC	1 cut(s)	579
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
LguI	GCTCTTC	1 cut(s)	2208
LmnI	GCTCC	5 cut(s)	661, 955, 1139, 1864, 2516
Lsp1109I	GCAGC	4 cut(s)	196, 228, 2071, 2199
LweI	GCATC	6 cut(s)	221, 1027, 2071, 2188, 2465, 2520
MabI	ACCWGGT	1 cut(s)	2898
MaeI	CTAG	8 cut(s)	230, 1229, 2024, 2108, 2660, 2676, 2810, 2826
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	7 cut(s)	13, 1042, 1478, 2321, 2611, 2692, 2815
MfeI	CAATTG	1 cut(s)	1844
MflI	RGATCY	2 cut(s)	343, 932
MhlI	GDGCHC	5 cut(s)	960, 1601, 1937, 2453, 2626
MlyI	GAGTC	3 cut(s)	423, 1695, 2741
Mph1103I	ATGCAT	1 cut(s)	2480
MroNI	GCCGGC	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	9 cut(s)	545, 633, 675, 1016, 1299, 1575, 1871, 2046, 2643
MslI	CAYNNNNRTG	5 cut(s)	732, 746, 1471, 1527, 1803
MspA1I	CMGCKG	1 cut(s)	241
MspCI	CTTAAG	2 cut(s)	632, 1574
MspI	CCGG	6 cut(s)	573, 579, 653, 963, 1968, 2788
MspR9I	CCNGG	8 cut(s)	599, 988, 1968, 2115, 2432, 2598, 2789, 2900
MunI	CAATTG	1 cut(s)	1844
Mva1269I	GAATGC	2 cut(s)	713, 2789
MvaI	CCWGG	6 cut(s)	599, 988, 2115, 2432, 2598, 2900
MvnI	CGCG	6 cut(s)	39, 129, 530, 536, 1048, 1056
MwoI	GCNNNNNNNGC	7 cut(s)	948, 1083, 1238, 1282, 1330, 2341, 2457
NaeI	GCCGGC	1 cut(s)	654
NciI	CCSGG	2 cut(s)	1968, 2789
NcoI	CCATGG	2 cut(s)	153, 639
NdeI	CATATG	2 cut(s)	2019, 2713
NgoMIV	GCCGGC	1 cut(s)	652
NheI	GCTAGC	1 cut(s)	2809
NlaIV	GGNNCC	8 cut(s)	285, 345, 479, 577, 657, 1284, 2518, 2720
NmuCI	GTSAC	5 cut(s)	1478, 2321, 2611, 2692, 2815
NruI	TCGCGA	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	2480
NspI	RCATGY	2 cut(s)	176, 672
NspV	TTCGAA	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	1527
PaeI	GCATGC	1 cut(s)	176
PagI	TCATGA	3 cut(s)	1776, 2413, 2911
PaqCI	CACCTGC	1 cut(s)	2185
PceI	AGGCCT	1 cut(s)	1324
PciSI	GCTCTTC	1 cut(s)	2208
PctI	GAATGC	2 cut(s)	713, 2789
PdiI	GCCGGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	9 cut(s)	61, 456, 620, 816, 974, 1623, 1810, 1838, 1963
PflMI	CCANNNNNTGG	1 cut(s)	2603
PfoI	TCCNGGA	2 cut(s)	597, 1966
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	5 cut(s)	211, 243, 477, 2061, 2189
Ple19I	CGATCG	1 cut(s)	554
PleI	GAGTC	3 cut(s)	423, 1694, 2740
PpsI	GAGTC	3 cut(s)	423, 1694, 2740
PpuMI	RGGWCCY	1 cut(s)	1261
PsiI	TTATAA	1 cut(s)	1772
Psp124BI	GAGCTC	1 cut(s)	960
Psp1406I	AACGTT	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	1261
Psp6I	CCWGG	6 cut(s)	597, 986, 2113, 2430, 2596, 2898
PspFI	CCCAGC	1 cut(s)	1360
PspGI	CCWGG	6 cut(s)	597, 986, 2113, 2430, 2596, 2898
PspN4I	GGNNCC	8 cut(s)	285, 345, 479, 577, 657, 1284, 2518, 2720
PspPI	GGNCC	4 cut(s)	185, 443, 477, 1261
PspPPI	RGGWCCY	1 cut(s)	1261
PstI	CTGCAG	2 cut(s)	1879, 2189
PsuI	RGATCY	2 cut(s)	343, 932
PvuI	CGATCG	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	241
RruI	TCGCGA	1 cut(s)	39
RsaI	GTAC	4 cut(s)	577, 919, 2037, 2135
RsaNI	GTAC	4 cut(s)	576, 918, 2036, 2134
RseI	CAYNNNNRTG	5 cut(s)	732, 746, 1471, 1527, 1803
SacI	GAGCTC	1 cut(s)	960
SalI	GTCGAC	1 cut(s)	2298
SapI	GCTCTTC	1 cut(s)	2208
SaqAI	TTAA	9 cut(s)	545, 633, 675, 1016, 1299, 1575, 1871, 2046, 2643
SatI	GCNGC	5 cut(s)	210, 242, 476, 2060, 2188
Sau96I	GGNCC	4 cut(s)	185, 443, 477, 1261
ScaI	AGTACT	1 cut(s)	2135
SchI	GAGTC	3 cut(s)	423, 1695, 2741
ScrFI	CCNGG	8 cut(s)	599, 988, 1968, 2115, 2432, 2598, 2789, 2900
SduI	GDGCHC	5 cut(s)	960, 1601, 1937, 2453, 2626
SexAI	ACCWGGT	1 cut(s)	2898
SfaNI	GCATC	6 cut(s)	221, 1027, 2071, 2188, 2465, 2520
SfcI	CTRYAG	5 cut(s)	357, 1718, 1875, 2185, 2461
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	2 cut(s)	443, 1261
SmiMI	CAYNNNNRTG	5 cut(s)	732, 746, 1471, 1527, 1803
SmlI	CTYRAG	4 cut(s)	632, 1277, 1541, 1574
SmoI	CTYRAG	4 cut(s)	632, 1277, 1541, 1574
SphI	GCATGC	1 cut(s)	176
SseBI	AGGCCT	1 cut(s)	1324
SsiI	CCGC	6 cut(s)	129, 374, 475, 1048, 1268, 2813
SspI	AATATT	3 cut(s)	32, 1255, 1426
SspMI	CTAG	8 cut(s)	230, 1229, 2024, 2108, 2660, 2676, 2810, 2826
SstI	GAGCTC	1 cut(s)	960
StuI	AGGCCT	1 cut(s)	1324
StyD4I	CCNGG	8 cut(s)	597, 986, 1966, 2113, 2430, 2596, 2787, 2898
StyI	CCWWGG	5 cut(s)	153, 245, 639, 1291, 2675
TaaI	ACNGT	8 cut(s)	358, 778, 1529, 1645, 1795, 1897, 2573, 2742
TaiI	ACGT	1 cut(s)	301
TaqII	GACCGA	1 cut(s)	1719
TatI	WGTACW	2 cut(s)	2035, 2133
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	9 cut(s)	61, 456, 620, 816, 974, 1623, 1810, 1838, 1963
Tru1I	TTAA	9 cut(s)	545, 633, 675, 1016, 1299, 1575, 1871, 2046, 2643
Tru9I	TTAA	9 cut(s)	545, 633, 675, 1016, 1299, 1575, 1871, 2046, 2643
TscAI	CASTG	5 cut(s)	1483, 1719, 2290, 2701, 2826
TseFI	GTSAC	5 cut(s)	1478, 2321, 2611, 2692, 2815
TseI	GCWGC	4 cut(s)	209, 241, 2059, 2187
Tsp45I	GTSAC	5 cut(s)	1478, 2321, 2611, 2692, 2815
TspGWI	ACGGA	2 cut(s)	1584, 1877
TspRI	CASTG	5 cut(s)	1483, 1719, 2290, 2701, 2826
Van91I	CCANNNNNTGG	1 cut(s)	2603
Vha464I	CTTAAG	2 cut(s)	632, 1574
VneI	GTGCAC	1 cut(s)	1597
VpaK11BI	GGWCC	2 cut(s)	443, 1261
XagI	CCTNNNNNAGG	2 cut(s)	1290, 2429
XapI	RAATTY	7 cut(s)	119, 582, 1031, 1590, 2144, 2229, 2486
XceI	RCATGY	2 cut(s)	176, 672
XmaJI	CCTAGG	1 cut(s)	2675
XmiI	GTMKAC	4 cut(s)	370, 626, 1689, 2299
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	8 cut(s)	230, 1229, 2024, 2108, 2660, 2676, 2810, 2826
ZrmI	AGTACT	1 cut(s)	2135
Zsp2I	ATGCAT	1 cut(s)	2480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.