Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

80636542 .. 80644804

Gene Structure 8263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3621 bp

ATGGATTCGTATACACTTAAGTCCATGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCATGTTTCCACTCAGACGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTTACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATTGCACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGGACCTTGCGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACGCCCCAGCAAAAAATGATTTTCTATTTGAAAAGCGCCTTCAAAACTATATTTTCGATATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTCAACTAGAAAAGGTGCACAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGCAATCTCATTGAAAGTCTTTTTCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGATGTGTGGGAGGGCAGGTCGCCCACCTTTTGATGATACAGGAATGGTTATAATCATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAACCACTAGAACCTGGGAGGCTGATGACGAAGTACTACTTGAAATTTGACACAATGAAATACATTATTCAGACACATGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGATAAAGGGAAGCGAAAAAAGCGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGACTGGTGATCCATCGGTTCATGATTTGTCCCTTACCCAGGATATGAACTCCATATGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAGAATTACAAAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGAGAATTGAGATAGTCACTGGTCGAAAATACCCATATGGGAACCACATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGAGTTGATGAATTCTCGAGCCCCTATAGCGCAACAGTTCTCCTGTCAAATCCCCAACAAGGAAAGCTGACTGTTAAGGCTGATCTTATATTTGAAGAATACAGTAAAGTCCCTGCCCTGATATTTCTAGTTTCACTTTACAAGAAAAAAAGCACCCTCTTTCCTCTACCTGAGGAAGTATGTATCATAGAAGATGATATTTATGAAGGCCCAAGTGAAGTGCTTCCAAACTCGACGAAATCCAAAAGGGTAGATGGTCCCATGCCCAGTTTCAAGCTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCAACAAAGTTCATGAAGATGAGATTGCTGCCAAATTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCCTCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCAAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACAACATCTTTCTAGTATCAAACATCATCCAAATCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGCTGGGCCTCATACTGACCCTGATGTCAAACCTCTAACAGGAGAAACAATATTCGAGCACATACGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTGTCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGAAGCTCCTGCAACCCTCATGGAATATTGAATGCTTCTCCCGGAGGTTTAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCTGAAGCGACCTGCAGATCCAGCAAGCACTATGGAGAATACTAGGAAGAAACATCAACACTCTCCGATTGTACCACCAAGGCACTGCTCGTTGACAGCAGCTGGAAAATCCAGAGAAGTAGAAACATTTCTTGGGTTTGAGAGTGTCTTTTCCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

1206

Amino Acids

136.43

Weight (kDa)

8.34

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	27 - 216	1.4e-29	DEAD/DEAH box helicase
ResIII	PF04851	38 - 173	2.4e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	334 - 413	2e-08	Helicase conserved C-terminal domain
WHD_SNRNP200	PF23445	445 - 524	6e-13	Winged Helix-turn-helix domain
Sec63	PF02889	534 - 842	1.6e-45	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1268
AasI	GACNNNNNNGTC	1 cut(s)	3116
Acc36I	ACCTGC	2 cut(s)	1223, 3478
AccB1I	GGYRCC	1 cut(s)	667
AccB7I	CCANNNNNTGG	1 cut(s)	2099
AccBSI	CCGCTC	1 cut(s)	830
AccI	GTMKAC	3 cut(s)	11, 1185, 1795
AccII	CGCG	2 cut(s)	433, 441
AccIII	TCCGGA	1 cut(s)	3344
AciI	CCGC	4 cut(s)	433, 653, 828, 2309
AclWI	GGATC	6 cut(s)	325, 509, 1050, 1892, 2162, 3470
AcsI	RAATTY	8 cut(s)	416, 1086, 1640, 1725, 1982, 2429, 2762, 3172
AcuI	CTGAAG	4 cut(s)	2321, 2733, 2985, 3482
AfaI	GTAC	3 cut(s)	1533, 1631, 3531
AfeI	AGCGCT	1 cut(s)	592
AflII	CTTAAG	2 cut(s)	17, 1070
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	5 cut(s)	371, 1609, 1926, 2092, 2394
AjuI	GAANNNNNNNTTGG	2 cut(s)	3573, 3605
AleI	CACNNNNGTG	2 cut(s)	1023, 2814
AloI	GAACNNNNNNTCC	2 cut(s)	2928, 2960
Alw21I	GWGCWC	5 cut(s)	862, 1097, 1433, 2908, 3153
Alw26I	GTCTC	4 cut(s)	1399, 2144, 2235, 2244
Alw44I	GTGCAC	2 cut(s)	858, 1093
AlwI	GGATC	6 cut(s)	325, 509, 1050, 1892, 2162, 3470
AlwNI	CAGNNNCTG	1 cut(s)	3560
Ama87I	CYCGRG	2 cut(s)	321, 2434
Aor13HI	TCCGGA	1 cut(s)	3344
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	5 cut(s)	707, 897, 1027, 2626, 3098
ApaLI	GTGCAC	2 cut(s)	858, 1093
ApeKI	GCWGC	6 cut(s)	869, 1555, 1683, 2756, 3068, 3557
ApoI	RAATTY	8 cut(s)	416, 1086, 1640, 1725, 1982, 2429, 2762, 3172
Asp700I	GAANNNNTTC	3 cut(s)	96, 2640, 3585
AspA2I	CCTAGG	1 cut(s)	2171
AspLEI	GCGC	5 cut(s)	142, 593, 777, 1749, 2450
AspS9I	GGNCC	6 cut(s)	303, 646, 2627, 2675, 2924, 3098
AsuC2I	CCSGG	3 cut(s)	1464, 2285, 3387
AsuHPI	GGTGA	6 cut(s)	1088, 1829, 1907, 2119, 2323, 3193
AsuNHI	GCTAGC	1 cut(s)	2305
AvaI	CYCGRG	2 cut(s)	321, 2434
AvaII	GGWCC	4 cut(s)	303, 646, 2675, 2924
AvrII	CCTAGG	1 cut(s)	2171
AxyI	CCTNAGG	1 cut(s)	2589
BaeGI	GKGCMC	2 cut(s)	862, 1097
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	2 cut(s)	2441, 2883
BauI	CACGAG	2 cut(s)	519, 2907
BbsI	GAAGAC	1 cut(s)	2712
Bbv12I	GWGCWC	5 cut(s)	862, 1097, 1433, 2908, 3153
BbvCI	CCTCAGC	2 cut(s)	1719, 2160
BbvI	GCAGC	6 cut(s)	881, 1567, 1695, 2743, 3055, 3569
BceAI	ACGGC	2 cut(s)	1698, 3263
BcgI	CGANNNNNNTGC	2 cut(s)	2109, 2143
BciT130I	CCWGG	5 cut(s)	373, 1611, 1928, 2094, 2396
BciVI	GTATCC	1 cut(s)	1728
BclI	TGATCA	1 cut(s)	3183
BcnI	CCSGG	3 cut(s)	1464, 2285, 3387
BcoDI	GTCTC	4 cut(s)	1399, 2144, 2235, 2244
BfmI	CTRYAG	6 cut(s)	1214, 1371, 1681, 1957, 2443, 3471
BfoI	RGCGCY	3 cut(s)	143, 594, 778
BfrI	CTTAAG	2 cut(s)	17, 1070
BfuAI	ACCTGC	2 cut(s)	1223, 3478
BfuI	GTATCC	1 cut(s)	1728
BisI	GCNGC	6 cut(s)	870, 1556, 1684, 2757, 3069, 3558
BlnI	CCTAGG	1 cut(s)	2171
BlpI	GCTNAGC	1 cut(s)	3064
BlsI	GCNGC	6 cut(s)	871, 1557, 1685, 2758, 3070, 3559
BmcAI	AGTACT	1 cut(s)	1631
Bme1390I	CCNGG	8 cut(s)	373, 1464, 1611, 1928, 2094, 2285, 2396, 3387
Bme18I	GGWCC	4 cut(s)	303, 646, 2675, 2924
BmeT110I	CYCGRG	2 cut(s)	321, 2434
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	6 cut(s)	303, 646, 2627, 2675, 2924, 3098
BmiI	GGNNCC	7 cut(s)	42, 305, 669, 2014, 2216, 2677, 3406
BmrFI	CCNGG	8 cut(s)	373, 1464, 1611, 1928, 2094, 2285, 2396, 3387
BmrI	ACTGGG	1 cut(s)	2679
BmsI	GCATC	5 cut(s)	412, 1567, 1684, 1961, 2016
BmtI	GCTAGC	1 cut(s)	2309
BmuI	ACTGGG	1 cut(s)	2679
BpiI	GAAGAC	1 cut(s)	2712
BplI	GAGNNNNNCTC	2 cut(s)	3396, 3428
Bpu10I	CCTNAGC	4 cut(s)	950, 1719, 1742, 2160
Bpu1102I	GCTNAGC	1 cut(s)	3064
BpuEI	CTTGAG	2 cut(s)	647, 1022
BpuMI	CCSGG	3 cut(s)	1464, 2285, 3387
BsaAI	YACGTR	1 cut(s)	2816
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaJI	CCNNGG	9 cut(s)	24, 676, 1610, 1926, 2093, 2171, 2284, 2883, 3536
BsaWI	WCCGGW	4 cut(s)	347, 2926, 3178, 3344
BsaXI	ACNNNNNCTCC	8 cut(s)	1219, 1249, 2322, 2352, 2928, 2958, 3197, 3227
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	4 cut(s)	151, 1897, 2197, 2685
Bse21I	CCTNAGG	1 cut(s)	2589
Bse3DI	GCAATG	2 cut(s)	1756, 3406
Bse8I	GATNNNNATC	1 cut(s)	1047
BseAI	TCCGGA	1 cut(s)	3344
BseBI	CCWGG	5 cut(s)	373, 1611, 1928, 2094, 2396
BseDI	CCNNGG	9 cut(s)	24, 676, 1610, 1926, 2093, 2171, 2284, 2883, 3536
BseGI	GGATG	7 cut(s)	220, 454, 1325, 1428, 2068, 3046, 3091
BseJI	GATNNNNATC	1 cut(s)	1047
BseMI	GCAATG	2 cut(s)	1756, 3406
BseNI	ACTGG	4 cut(s)	151, 1897, 2197, 2685
BseRI	GAGGAG	1 cut(s)	3218
BseSI	GKGCMC	2 cut(s)	862, 1097
BseXI	GCAGC	6 cut(s)	881, 1567, 1695, 2743, 3055, 3569
BseYI	CCCAGC	2 cut(s)	745, 3095
Bsh1236I	CGCG	2 cut(s)	433, 441
BshFI	GGCC	5 cut(s)	709, 899, 1029, 2628, 3100
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	5 cut(s)	862, 1097, 1433, 2908, 3153
BsiHKCI	CYCGRG	2 cut(s)	321, 2434
BsiSI	CCGG	8 cut(s)	38, 348, 1464, 2284, 2927, 3179, 3345, 3387
BslFI	GGGAC	3 cut(s)	1903, 2513, 2661
BsmAI	GTCTC	4 cut(s)	1399, 2144, 2235, 2244
BsmFI	GGGAC	3 cut(s)	1903, 2513, 2661
BsmI	GAATGC	3 cut(s)	98, 2285, 3382
BsnI	GGCC	5 cut(s)	709, 899, 1029, 2628, 3100
BsoBI	CYCGRG	2 cut(s)	321, 2434
Bsp1286I	GDGCHC	7 cut(s)	862, 1097, 1433, 2441, 2883, 2908, 3153
Bsp13I	TCCGGA	1 cut(s)	3344
Bsp1407I	TGTACA	1 cut(s)	1531
Bsp1720I	GCTNAGC	1 cut(s)	3064
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	433, 653, 828, 2309
BspANI	GGCC	5 cut(s)	709, 899, 1029, 2628, 3100
BspEI	TCCGGA	1 cut(s)	3344
BspFNI	CGCG	2 cut(s)	433, 441
BspHI	TCATGA	4 cut(s)	1272, 1909, 2407, 2740
BspLI	GGNNCC	7 cut(s)	42, 305, 669, 2014, 2216, 2677, 3406
BspMAI	CTGCAG	3 cut(s)	1375, 1685, 3475
BspMI	ACCTGC	2 cut(s)	1223, 3478
BspOI	GCTAGC	1 cut(s)	2309
BspPI	GGATC	6 cut(s)	325, 509, 1050, 1892, 2162, 3470
BspQI	GCTCTTC	1 cut(s)	1704
BspT107I	GGYRCC	1 cut(s)	667
BspTI	CTTAAG	2 cut(s)	17, 1070
BsrBI	CCGCTC	1 cut(s)	830
BsrDI	GCAATG	2 cut(s)	1756, 3406
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	1531
BsrI	ACTGG	4 cut(s)	151, 1897, 2197, 2685
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	9 cut(s)	24, 676, 1610, 1926, 2093, 2171, 2284, 2883, 3536
BssNAI	GTATAC	1 cut(s)	12
BssSI	CACGAG	2 cut(s)	519, 2907
BssT1I	CCWWGG	5 cut(s)	24, 676, 2171, 2883, 3536
Bst1107I	GTATAC	1 cut(s)	12
Bst2BI	CACGAG	2 cut(s)	519, 2907
Bst2UI	CCWGG	5 cut(s)	373, 1611, 1928, 2094, 2396
Bst6I	CTCTTC	2 cut(s)	1276, 1704
BstAFI	CTTAAG	2 cut(s)	17, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	1531
BstBAI	YACGTR	1 cut(s)	2816
BstC8I	GCNNGC	4 cut(s)	39, 564, 2307, 3484
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	3 cut(s)	675, 1925, 3129
BstF5I	GGATG	7 cut(s)	220, 454, 1325, 1428, 2068, 3046, 3091
BstFNI	CGCG	2 cut(s)	433, 441
BstH2I	RGCGCY	3 cut(s)	143, 594, 778
BstHHI	GCGC	5 cut(s)	142, 593, 777, 1749, 2450
BstMAI	GTCTC	4 cut(s)	1399, 2144, 2235, 2244
BstNI	CCWGG	5 cut(s)	373, 1611, 1928, 2094, 2396
BstNSI	RCATGY	4 cut(s)	57, 108, 1676, 3430
BstSCI	CCNGG	8 cut(s)	371, 1462, 1609, 1926, 2092, 2283, 2394, 3385
BstSFI	CTRYAG	6 cut(s)	1214, 1371, 1681, 1957, 2443, 3471
BstSLI	GKGCMC	2 cut(s)	862, 1097
BstUI	CGCG	2 cut(s)	433, 441
BstV1I	GCAGC	6 cut(s)	881, 1567, 1695, 2743, 3055, 3569
BstV2I	GAAGAC	1 cut(s)	2712
BstX2I	RGATCY	2 cut(s)	317, 3475
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	2 cut(s)	317, 3475
BstZ17I	GTATAC	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	2589
BsuI	GTATCC	1 cut(s)	1728
BsuRI	GGCC	5 cut(s)	709, 899, 1029, 2628, 3100
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	7 cut(s)	220, 454, 1325, 1428, 2068, 3046, 3091
BtsI	GCAGTG	3 cut(s)	979, 1208, 3541
BtsIMutI	CAGTG	6 cut(s)	979, 1208, 1779, 2190, 2315, 3541
BveI	ACCTGC	2 cut(s)	1223, 3478
Cac8I	GCNNGC	4 cut(s)	39, 564, 2307, 3484
CaiI	CAGNNNCTG	1 cut(s)	3560
CciI	TCATGA	4 cut(s)	1272, 1909, 2407, 2740
CfoI	GCGC	5 cut(s)	142, 593, 777, 1749, 2450
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	6 cut(s)	303, 646, 2627, 2675, 2924, 3098
CsiI	ACCWGGT	1 cut(s)	2394
Csp6I	GTAC	3 cut(s)	1532, 1630, 3530
CviQI	GTAC	3 cut(s)	1532, 1630, 3530
DrdI	GACNNNNNNGTC	1 cut(s)	3116
DseDI	GACNNNNNNGTC	1 cut(s)	3116
Eam1104I	CTCTTC	2 cut(s)	1276, 1704
EarI	CTCTTC	2 cut(s)	1276, 1704
Eco130I	CCWWGG	5 cut(s)	24, 676, 2171, 2883, 3536
Eco147I	AGGCCT	1 cut(s)	709
Eco24I	GRGCYC	2 cut(s)	2441, 2883
Eco32I	GATATC	2 cut(s)	799, 3442
Eco47I	GGWCC	4 cut(s)	303, 646, 2675, 2924
Eco47III	AGCGCT	1 cut(s)	592
Eco57I	CTGAAG	4 cut(s)	2321, 2733, 2985, 3482
Eco81I	CCTNAGG	1 cut(s)	2589
Eco88I	CYCGRG	2 cut(s)	321, 2434
EcoNI	CCTNNNNNAGG	3 cut(s)	675, 1925, 3129
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	2429
EcoRII	CCWGG	5 cut(s)	371, 1609, 1926, 2092, 2394
EcoRV	GATATC	2 cut(s)	799, 3442
EcoT14I	CCWWGG	5 cut(s)	24, 676, 2171, 2883, 3536
EcoT22I	ATGCAT	1 cut(s)	1976
EcoT38I	GRGCYC	2 cut(s)	2441, 2883
ErhI	CCWWGG	5 cut(s)	24, 676, 2171, 2883, 3536
FalI	AAGNNNNNCTT	6 cut(s)	943, 975, 1619, 1651, 1683, 1715
FaqI	GGGAC	3 cut(s)	1903, 2513, 2661
FauNDI	CATATG	3 cut(s)	1515, 1943, 2209
FbaI	TGATCA	1 cut(s)	3183
FblI	GTMKAC	3 cut(s)	11, 1185, 1795
Fnu4HI	GCNGC	6 cut(s)	870, 1556, 1684, 2757, 3069, 3558
FokI	GGATG	7 cut(s)	227, 461, 1332, 1435, 2075, 3033, 3098
FriOI	GRGCYC	2 cut(s)	2441, 2883
Fsp4HI	GCNGC	6 cut(s)	870, 1556, 1684, 2757, 3069, 3558
GlaI	GCGC	5 cut(s)	141, 592, 776, 1748, 2449
GluI	GCNGC	6 cut(s)	870, 1556, 1684, 2757, 3069, 3558
GsaI	CCCAGC	2 cut(s)	749, 3099
HaeII	RGCGCY	3 cut(s)	143, 594, 778
HaeIII	GGCC	5 cut(s)	709, 899, 1029, 2628, 3100
HapII	CCGG	8 cut(s)	38, 348, 1464, 2284, 2927, 3179, 3345, 3387
HhaI	GCGC	5 cut(s)	142, 593, 777, 1749, 2450
Hin6I	GCGC	5 cut(s)	140, 591, 775, 1747, 2448
HinP1I	GCGC	5 cut(s)	140, 591, 775, 1747, 2448
HincII	GTYRAC	2 cut(s)	1796, 3552
HindII	GTYRAC	2 cut(s)	1796, 3552
HindIII	AAGCTT	4 cut(s)	957, 1760, 2693, 2918
HpaII	CCGG	8 cut(s)	38, 348, 1464, 2284, 2927, 3179, 3345, 3387
HphI	GGTGA	6 cut(s)	1088, 1829, 1907, 2119, 2323, 3193
Hpy99I	CGWCG	1 cut(s)	2656
HpyAV	CCTTC	4 cut(s)	283, 788, 2110, 2618
HpyCH4IV	ACGT	4 cut(s)	120, 2815, 2902, 3078
HpySE526I	ACGT	4 cut(s)	120, 2815, 2902, 3078
HspAI	GCGC	5 cut(s)	140, 591, 775, 1747, 2448
Kpn2I	TCCGGA	1 cut(s)	3344
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	3183
LguI	GCTCTTC	1 cut(s)	1704
LmnI	GCTCC	7 cut(s)	46, 340, 524, 1360, 2012, 3356, 3404
Lsp1109I	GCAGC	6 cut(s)	881, 1567, 1695, 2743, 3055, 3569
LweI	GCATC	5 cut(s)	412, 1567, 1684, 1961, 2016
MabI	ACCWGGT	1 cut(s)	2394
MaeII	ACGT	4 cut(s)	120, 2815, 2902, 3078
MaeIII	GTNAC	7 cut(s)	427, 974, 2107, 2188, 2311, 2785, 3422
MbiI	CCGCTC	1 cut(s)	830
MfeI	CAATTG	1 cut(s)	1340
MflI	RGATCY	2 cut(s)	317, 3475
MhlI	GDGCHC	7 cut(s)	862, 1097, 1433, 2441, 2883, 2908, 3153
MlyI	GAGTC	4 cut(s)	1191, 2237, 2702, 3221
Mph1103I	ATGCAT	1 cut(s)	1976
MroI	TCCGGA	1 cut(s)	3344
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	3 cut(s)	96, 2640, 3585
MslI	CAYNNNNRTG	6 cut(s)	131, 967, 1023, 1299, 2745, 2814
MspA1I	CMGCKG	2 cut(s)	3068, 3560
MspCI	CTTAAG	2 cut(s)	17, 1070
MspI	CCGG	8 cut(s)	38, 348, 1464, 2284, 2927, 3179, 3345, 3387
MspR9I	CCNGG	8 cut(s)	373, 1464, 1611, 1928, 2094, 2285, 2396, 3387
MunI	CAATTG	1 cut(s)	1340
Mva1269I	GAATGC	3 cut(s)	98, 2285, 3382
MvaI	CCWGG	5 cut(s)	373, 1611, 1928, 2094, 2396
MvnI	CGCG	2 cut(s)	433, 441
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	1464, 2285, 3387
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	3 cut(s)	1515, 1943, 2209
NgoMIV	GCCGGC	1 cut(s)	37
NheI	GCTAGC	1 cut(s)	2305
NlaIV	GGNNCC	7 cut(s)	42, 305, 669, 2014, 2216, 2677, 3406
NmuCI	GTSAC	5 cut(s)	974, 2107, 2188, 2311, 2785
NsiI	ATGCAT	1 cut(s)	1976
NspI	RCATGY	4 cut(s)	57, 108, 1676, 3430
OliI	CACNNNNGTG	2 cut(s)	1023, 2814
PaeR7I	CTCGAG	1 cut(s)	2434
PagI	TCATGA	4 cut(s)	1272, 1909, 2407, 2740
PceI	AGGCCT	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	1704
PctI	GAATGC	3 cut(s)	98, 2285, 3382
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	3 cut(s)	96, 2640, 3585
PfeI	GAWTC	8 cut(s)	5, 201, 359, 1119, 1306, 1334, 1459, 3457
PflMI	CCANNNNNTGG	1 cut(s)	2099
PfoI	TCCNGGA	2 cut(s)	1462, 3385
PkrI	GCNGC	6 cut(s)	871, 1557, 1685, 2758, 3070, 3559
PleI	GAGTC	4 cut(s)	1190, 2236, 2702, 3220
PpsI	GAGTC	4 cut(s)	1190, 2236, 2702, 3220
Ppu21I	YACGTR	1 cut(s)	2816
PpuMI	RGGWCCY	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	1268
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	5 cut(s)	371, 1609, 1926, 2092, 2394
PspFI	CCCAGC	2 cut(s)	745, 3095
PspGI	CCWGG	5 cut(s)	371, 1609, 1926, 2092, 2394
PspN4I	GGNNCC	7 cut(s)	42, 305, 669, 2014, 2216, 2677, 3406
PspPI	GGNCC	6 cut(s)	303, 646, 2627, 2675, 2924, 3098
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	3 cut(s)	1375, 1685, 3475
PstNI	CAGNNNCTG	1 cut(s)	3560
PsuI	RGATCY	2 cut(s)	317, 3475
PvuII	CAGCTG	2 cut(s)	3068, 3560
RsaI	GTAC	3 cut(s)	1533, 1631, 3531
RsaNI	GTAC	3 cut(s)	1532, 1630, 3530
RseI	CAYNNNNRTG	6 cut(s)	131, 967, 1023, 1299, 2745, 2814
SalI	GTCGAC	1 cut(s)	1794
SapI	GCTCTTC	1 cut(s)	1704
SatI	GCNGC	6 cut(s)	870, 1556, 1684, 2757, 3069, 3558
Sau96I	GGNCC	6 cut(s)	303, 646, 2627, 2675, 2924, 3098
ScaI	AGTACT	1 cut(s)	1631
SchI	GAGTC	4 cut(s)	1191, 2237, 2702, 3221
ScrFI	CCNGG	8 cut(s)	373, 1464, 1611, 1928, 2094, 2285, 2396, 3387
SduI	GDGCHC	7 cut(s)	862, 1097, 1433, 2441, 2883, 2908, 3153
SexAI	ACCWGGT	1 cut(s)	2394
SfaNI	GCATC	5 cut(s)	412, 1567, 1684, 1961, 2016
SfcI	CTRYAG	6 cut(s)	1214, 1371, 1681, 1957, 2443, 3471
Sfr274I	CTCGAG	1 cut(s)	2434
SinI	GGWCC	4 cut(s)	303, 646, 2675, 2924
SlaI	CTCGAG	1 cut(s)	2434
SmiMI	CAYNNNNRTG	6 cut(s)	131, 967, 1023, 1299, 2745, 2814
SmlI	CTYRAG	5 cut(s)	17, 662, 1037, 1070, 2434
SmoI	CTYRAG	5 cut(s)	17, 662, 1037, 1070, 2434
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	4 cut(s)	433, 653, 828, 2309
SspI	AATATT	4 cut(s)	640, 812, 3144, 3372
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	8 cut(s)	371, 1462, 1609, 1926, 2092, 2283, 2394, 3385
StyI	CCWWGG	5 cut(s)	24, 676, 2171, 2883, 3536
TaiI	ACGT	4 cut(s)	123, 2818, 2905, 3081
TaqII	GACCGA	1 cut(s)	1215
TatI	WGTACW	2 cut(s)	1531, 1629
TfiI	GAWTC	8 cut(s)	5, 201, 359, 1119, 1306, 1334, 1459, 3457
TscAI	CASTG	6 cut(s)	979, 1215, 1786, 2197, 2322, 3548
TseFI	GTSAC	5 cut(s)	974, 2107, 2188, 2311, 2785
TseI	GCWGC	6 cut(s)	869, 1555, 1683, 2756, 3068, 3557
Tsp45I	GTSAC	5 cut(s)	974, 2107, 2188, 2311, 2785
TspGWI	ACGGA	1 cut(s)	1373
TspRI	CASTG	6 cut(s)	979, 1215, 1786, 2197, 2322, 3548
Van91I	CCANNNNNTGG	1 cut(s)	2099
Vha464I	CTTAAG	2 cut(s)	17, 1070
VneI	GTGCAC	2 cut(s)	858, 1093
VpaK11BI	GGWCC	4 cut(s)	303, 646, 2675, 2924
XagI	CCTNNNNNAGG	3 cut(s)	675, 1925, 3129
XapI	RAATTY	8 cut(s)	416, 1086, 1640, 1725, 1982, 2429, 2762, 3172
XbaI	TCTAGA	1 cut(s)	2698
XceI	RCATGY	4 cut(s)	57, 108, 1676, 3430
XhoI	CTCGAG	1 cut(s)	2434
XmaJI	CCTAGG	1 cut(s)	2171
XmiI	GTMKAC	3 cut(s)	11, 1185, 1795
XmnI	GAANNNNTTC	3 cut(s)	96, 2640, 3585
ZrmI	AGTACT	1 cut(s)	1631
Zsp2I	ATGCAT	1 cut(s)	1976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.