Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

86182309 .. 86184901

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG637500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGAAATTCGAGGTTCAGGTTTTGAGATCTGCGATTCTCTTAGTAGTTTACTTCGATTTTCAAAGATTTGAGGACGGATTTGAAGAGAGTCAGCAGTTTTGTGAAACGGGTTCAAGCATGGATTCGTATTCACTTAAGTCCATGGCAGACTTGCAGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAATGTGAACATGGTTGTGTCAGCGCCGACTGGAATTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACGCCCCAGCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

190

Amino Acids

21.9

Weight (kDa)

7.55

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	68 - 172	2.5e-17	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	326, 361
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	65, 86, 117, 196, 288
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	265, 433, 533
AluI	AGCT	3 cut(s)	265, 433, 533
Alw21I	GWGCWC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	393
AxyI	CCTNAGG	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BccI	CCATC	2 cut(s)	299, 364
BciT130I	CCWGG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	162, 395
BmrFI	CCNGG	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 361
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	326, 361
BseMII	CTCAG	2 cut(s)	291, 492
BseNI	ACTGG	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	560
BshFI	GGCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	326, 361
BsnI	GGCC	1 cut(s)	524
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	29, 407
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	2 cut(s)	292, 493
BspLI	GGNNCC	2 cut(s)	162, 395
BspPI	GGATC	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	29, 407
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	3 cut(s)	43, 300, 501
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	32, 410
BstMBI	GATC	2 cut(s)	29, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 530
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	461
BstX2I	RGATCY	2 cut(s)	29, 407
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	2 cut(s)	29, 407
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	393
CviAII	CATG	4 cut(s)	121, 145, 174, 217
CviJI	RGCY	8 cut(s)	161, 265, 280, 365, 433, 524, 533, 553
CviKI_1	RGCY	8 cut(s)	161, 265, 280, 365, 433, 524, 533, 553
DdeI	CTNAG	3 cut(s)	43, 300, 501
DpnI	GATC	2 cut(s)	31, 409
DpnII	GATC	2 cut(s)	29, 407
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	124, 148, 177, 220
FaiI	YATR	6 cut(s)	122, 146, 175, 218, 348, 419
FatI	CATG	4 cut(s)	120, 144, 173, 216
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	435
GlaI	GCGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	124, 148, 177, 220
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	5 cut(s)	37, 91, 125, 291, 449
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	4 cut(s)	52, 214, 315, 470
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	288, 374, 386, 500
Hpy8I	GTNNAC	4 cut(s)	52, 214, 315, 470
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	157, 205, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 530
HpyF3I	CTNAG	3 cut(s)	43, 300, 501
Hsp92II	CATG	4 cut(s)	124, 148, 177, 220
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	29, 407
LmnI	GCTCC	2 cut(s)	166, 430
MalI	GATC	2 cut(s)	31, 409
MboI	GATC	2 cut(s)	29, 407
MboII	GAAGA	2 cut(s)	98, 525
MflI	RGATCY	2 cut(s)	29, 407
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	3 cut(s)	8, 181, 240
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	7 cut(s)	7, 67, 270, 295, 303, 496, 514
MseI	TTAA	3 cut(s)	138, 180, 491
MslI	CAYNNNNRTG	1 cut(s)	221
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	423, 530
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	29, 407
NlaIII	CATG	4 cut(s)	124, 148, 177, 220
NlaIV	GGNNCC	2 cut(s)	162, 395
NspI	RCATGY	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	524
PfeI	GAWTC	4 cut(s)	37, 125, 291, 449
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	461
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	162, 395
PspPI	GGNCC	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	29, 407
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	138, 180, 491
Sau3AI	GATC	2 cut(s)	29, 407
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	435
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	8, 181, 240
SseBI	AGGCCT	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	12, 57, 169
TasI	AATT	3 cut(s)	8, 181, 240
TfiI	GAWTC	4 cut(s)	37, 125, 291, 449
Tru1I	TTAA	3 cut(s)	138, 180, 491
Tru9I	TTAA	3 cut(s)	138, 180, 491
TspDTI	ATGAA	2 cut(s)	283, 462
TspGWI	ACGGA	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.