Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

79293995 .. 79295355

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG617200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATACTTATGAAGGCCCAAGTCAAGTGCTTCCAAAGTCGACGAAATCCAAAAGGGCCCAGTTTCAAGCTTCTAGATAAAGACTCTGAAGAAGATGAGGTTGCCGACAAAGTTCATGAAGATGAGTTTGCTGCCAAAGTTCAAACTGATGACAAATTAAGTTGTGACACAACAAACAAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGATTCTGGAAGAATTAGAATGGAATAAAGTTCCAAGGCGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGTACAACATCTTTCTAGTATCAAAACTCATCCAACTCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGGAGAAACAATATTCGAGCACATGCGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGTGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAACAAAACCAGATGAGGTTATCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGAAGCTCCTGCAATCCCTATGGAATATTGAATGCTTCTCCCAGAGGTTCAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCCGAAGCGACCTGCAGATCCAGCAAGCACTATGGAGAATACTAGGAAGAAACATCAACACTCTCCAATTGTACCACCAAGGCACTGCTCGTTGACAGCAGTTGGAAAATCCAGAGAAGTAGAAACATTTCTTGGGTTTGAGAGTGTCTTTTCCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

293

Amino Acids

32.82

Weight (kDa)

8.85

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	605
AclWI	GGATC	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	108, 285
AfaI	GTAC	2 cut(s)	321, 792
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	5 cut(s)	67, 143, 637, 657, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	834, 866
AluBI	AGCT	6 cut(s)	70, 220, 363, 368, 428, 612
AluI	AGCT	6 cut(s)	70, 220, 363, 368, 428, 612
Alw21I	GWGCWC	2 cut(s)	208, 414
AlwI	GGATC	1 cut(s)	731
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	2 cut(s)	15, 56
ApaI	GGGCCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	131, 368
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	4 cut(s)	16, 56, 57, 224
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	208, 414
BbvI	GCAGC	2 cut(s)	118, 355
BccI	CCATC	3 cut(s)	304, 380, 700
BceAI	ACGGC	1 cut(s)	524
BclI	TGATCA	1 cut(s)	444
BfaI	CTAG	3 cut(s)	74, 333, 762
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	1 cut(s)	739
BisI	GCNGC	2 cut(s)	132, 369
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	2 cut(s)	133, 370
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	16, 56, 57, 224
BmiI	GGNNCC	2 cut(s)	58, 667
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	657, 689
Bpu1102I	GCTNAGC	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	183, 275, 797
BsaWI	WCCGGW	3 cut(s)	226, 439, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	667
BseAI	TCCGGA	1 cut(s)	605
BseDI	CCNNGG	3 cut(s)	183, 275, 797
BseGI	GGATG	2 cut(s)	346, 391
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	667
BseMII	CTCAG	2 cut(s)	378, 462
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	118, 355
BshFI	GGCC	2 cut(s)	17, 58
BsiHKAI	GWGCWC	2 cut(s)	208, 414
BsiSI	CCGG	3 cut(s)	227, 440, 606
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	17, 58
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	60, 208, 414
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	2 cut(s)	444, 736
Bsp1720I	GCTNAGC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	17, 58
BspCNI	CTCAG	2 cut(s)	377, 463
BspEI	TCCGGA	1 cut(s)	605
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	58, 667
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	183, 275, 797
BssMI	GATC	2 cut(s)	444, 736
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	3 cut(s)	183, 275, 797
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	745
BstDEI	CTNAG	3 cut(s)	364, 429, 471
BstF5I	GGATG	2 cut(s)	346, 391
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	2 cut(s)	447, 739
BstMBI	GATC	2 cut(s)	444, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNSI	RCATGY	2 cut(s)	418, 691
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	118, 355
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	17, 58
BtsCI	GGATG	2 cut(s)	346, 391
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	1 cut(s)	802
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	1 cut(s)	745
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	4 cut(s)	16, 56, 57, 224
Csp6I	GTAC	2 cut(s)	320, 791
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	6 cut(s)	116, 382, 415, 526, 688, 709
CviQI	GTAC	2 cut(s)	320, 791
DdeI	CTNAG	3 cut(s)	364, 429, 471
DpnI	GATC	2 cut(s)	446, 738
DpnII	GATC	2 cut(s)	444, 736
Eco130I	CCWWGG	3 cut(s)	183, 275, 797
Eco24I	GRGCYC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	108, 285
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	3 cut(s)	183, 275, 797
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	3 cut(s)	183, 275, 797
FaeI	CATG	6 cut(s)	119, 385, 418, 529, 691, 712
FatI	CATG	6 cut(s)	115, 381, 414, 525, 687, 708
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	132, 369
FokI	GGATG	2 cut(s)	333, 398
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	132, 369
FspAI	RTGCGCAY	1 cut(s)	419
FspBI	CTAG	3 cut(s)	74, 333, 762
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	2 cut(s)	132, 369
HaeIII	GGCC	2 cut(s)	17, 58
HapII	CCGG	3 cut(s)	227, 440, 606
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	6 cut(s)	119, 385, 418, 529, 691, 712
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	2 cut(s)	41, 813
HindII	GTYRAC	2 cut(s)	41, 813
HindIII	AAGCTT	2 cut(s)	68, 218
HinfI	GANTC	4 cut(s)	83, 244, 473, 718
HpaII	CCGG	3 cut(s)	227, 440, 606
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	2 cut(s)	41, 813
Hpy188I	TCNGA	5 cut(s)	88, 304, 575, 723, 881
Hpy188III	TCNNGA	8 cut(s)	74, 116, 209, 248, 484, 606, 715, 831
Hpy8I	GTNNAC	2 cut(s)	41, 813
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	202, 378
HpyCH4V	TGCA	2 cut(s)	618, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	3 cut(s)	364, 429, 471
HpySE526I	ACGT	2 cut(s)	202, 378
Hsp92II	CATG	6 cut(s)	119, 385, 418, 529, 691, 712
HspAI	GCGC	1 cut(s)	418
Kpn2I	TCCGGA	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	444, 736
LmnI	GCTCC	2 cut(s)	617, 665
Lsp1109I	GCAGC	2 cut(s)	118, 355
MaeI	CTAG	3 cut(s)	74, 333, 762
MaeII	ACGT	2 cut(s)	202, 378
MaeIII	GTNAC	2 cut(s)	164, 683
MalI	GATC	2 cut(s)	446, 738
MboI	GATC	2 cut(s)	444, 736
MboII	GAAGA	7 cut(s)	101, 104, 131, 226, 263, 291, 778
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	3 cut(s)	60, 208, 414
MluCI	AATT	5 cut(s)	155, 188, 254, 433, 786
MlyI	GAGTC	2 cut(s)	77, 482
MmeI	TCCRAC	2 cut(s)	374, 802
MnlI	CCTC	6 cut(s)	91, 386, 460, 559, 588, 644
MroI	TCCGGA	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	846
MseI	TTAA	3 cut(s)	158, 309, 479
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	227, 440, 606
MunI	CAATTG	1 cut(s)	786
Mva1269I	GAATGC	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	740
NdeII	GATC	2 cut(s)	444, 736
NlaIII	CATG	6 cut(s)	119, 385, 418, 529, 691, 712
NlaIV	GGNNCC	2 cut(s)	58, 667
NmuCI	GTSAC	1 cut(s)	164
NsbI	TGCGCA	1 cut(s)	419
NspI	RCATGY	2 cut(s)	418, 691
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	244, 718
PkrI	GCNGC	2 cut(s)	133, 370
PleI	GAGTC	2 cut(s)	77, 481
PpsI	GAGTC	2 cut(s)	77, 481
PspN4I	GGNNCC	2 cut(s)	58, 667
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	4 cut(s)	16, 56, 57, 224
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	321, 792
RsaNI	GTAC	2 cut(s)	320, 791
RseI	CAYNNNNRTG	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	158, 309, 479
SatI	GCNGC	2 cut(s)	132, 369
Sau3AI	GATC	2 cut(s)	444, 736
Sau96I	GGNCC	4 cut(s)	16, 56, 57, 224
SchI	GAGTC	2 cut(s)	77, 482
SduI	GDGCHC	3 cut(s)	60, 208, 414
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	5 cut(s)	155, 188, 254, 433, 786
SspI	AATATT	2 cut(s)	405, 633
SspMI	CTAG	3 cut(s)	74, 333, 762
StyI	CCWWGG	3 cut(s)	183, 275, 797
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	205, 381
TaqI	TCGA	3 cut(s)	40, 408, 699
TasI	AATT	5 cut(s)	155, 188, 254, 433, 786
TatI	WGTACW	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	244, 718
Tru1I	TTAA	3 cut(s)	158, 309, 479
Tru9I	TTAA	3 cut(s)	158, 309, 479
TscAI	CASTG	1 cut(s)	809
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	131, 368
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	26, 104, 132
TspRI	CASTG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	2 cut(s)	418, 691
XmiI	GTMKAC	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	3 cut(s)	74, 333, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.