Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

1374235 .. 1375930

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCAGATTTGCCTGCTCCCTTTCGATCATCGTTTAATTTTAGGTACTTCAATTCTCTGCAGAGCGAATGTTTTCCTGTTTGTTTCCACTCAGATACAAACATGGTTGTGTCAGCACCAACTGGAAGTGGTAAAACAGTCATCTTCGAGCTTTGCATTCTGAGGCTTCTTTCACGATTCCTCTCTGAGGATGGGAGGCTTGGTCGTACAAATGGGACTCTCAAAACTATCTATATAGCCCCATCAAAGGCTTTAGTCCAGGAGAAGGTTCGTGACTGGAACCAGAAGTTCGGGTCTTGGGGGATAACTTGCTTGGAGCTTACTGGAGATAATGAATCTTACAACGTCAGGAATATACAGGAAGCAGACATTATATTAACCACTCCTGAGAAATTTGATGCAGTAACCAGGTATCGTGCAAAGGATGGTGGAATGAGCTTTTTCAGTGATATAGCACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCGGTTTTGGAGGCAATAGTTAGTAGAATAAAAATGCTTGCTCAGAACCCTGAATTAAAATCAAGCTCTCTGGCTCACGTACGTTTCCTGGCTGTGTCTGCTACCATTCCAAATATTGAGGACCTTGGTGAGATTTGCATTCATTGGGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

5.83

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	503
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	3 cut(s)	47, 208, 582
AfiI	CCNNNNNNNGG	3 cut(s)	187, 247, 265
AgsI	TTSAA	2 cut(s)	52, 487
AjnI	CCWGG	3 cut(s)	258, 407, 588
AluBI	AGCT	4 cut(s)	151, 319, 438, 567
AluI	AGCT	4 cut(s)	151, 319, 438, 567
AlwI	GGATC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	495
BccI	CCATC	3 cut(s)	185, 250, 419
BciT130I	CCWGG	3 cut(s)	260, 409, 590
BfmI	CTRYAG	1 cut(s)	59
Bme1390I	CCNGG	3 cut(s)	260, 409, 590
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	3 cut(s)	260, 409, 590
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 247, 265
Bse1I	ACTGG	3 cut(s)	127, 281, 328
BseBI	CCWGG	3 cut(s)	260, 409, 590
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	196, 430
BseLI	CCNNNNNNNGG	3 cut(s)	187, 247, 265
BseMII	CTCAG	5 cut(s)	105, 152, 177, 378, 557
BseNI	ACTGG	3 cut(s)	127, 281, 328
BsiWI	CGTACG	1 cut(s)	580
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	187, 247, 265
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	2 cut(s)	156, 639
Bsp143I	GATC	2 cut(s)	26, 490
BspACI	CCGC	1 cut(s)	503
BspCNI	CTCAG	5 cut(s)	104, 153, 178, 379, 556
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	127, 281, 328
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	2 cut(s)	26, 490
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	3 cut(s)	260, 409, 590
Bst4CI	ACNGT	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	15, 540
BstDEI	CTNAG	5 cut(s)	91, 161, 186, 387, 543
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	2 cut(s)	196, 430
BstKTI	GATC	2 cut(s)	29, 493
BstMBI	GATC	2 cut(s)	26, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	3 cut(s)	260, 409, 590
BstSCI	CCNGG	3 cut(s)	258, 407, 588
BstSFI	CTRYAG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	196, 430
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	15, 540
Cfr13I	GGNCC	1 cut(s)	622
CsiI	ACCWGGT	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	46, 207, 581
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	3 cut(s)	46, 207, 581
DdeI	CTNAG	5 cut(s)	91, 161, 186, 387, 543
DpnI	GATC	2 cut(s)	28, 492
DpnII	GATC	2 cut(s)	26, 490
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	622
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	3 cut(s)	258, 407, 588
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	1 cut(s)	106
FaiI	YATR	6 cut(s)	104, 234, 236, 356, 374, 452
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	102
FokI	GGATG	2 cut(s)	203, 437
GsuI	CTGGAG	1 cut(s)	345
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	3 cut(s)	177, 217, 335
HphI	GGTGA	1 cut(s)	641
Hpy188I	TCNGA	6 cut(s)	7, 94, 162, 187, 546, 656
Hpy188III	TCNNGA	4 cut(s)	174, 272, 349, 386
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	3 cut(s)	345, 579, 583
HpyCH4V	TGCA	5 cut(s)	61, 156, 401, 419, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	5 cut(s)	91, 161, 186, 387, 543
HpySE526I	ACGT	3 cut(s)	345, 579, 583
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	26, 490
LmnI	GCTCC	3 cut(s)	22, 316, 500
LweI	GCATC	1 cut(s)	388
MabI	ACCWGGT	1 cut(s)	407
MaeII	ACGT	3 cut(s)	345, 579, 583
MaeIII	GTNAC	2 cut(s)	272, 403
MalI	GATC	2 cut(s)	28, 492
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	2 cut(s)	26, 490
MboII	GAAGA	1 cut(s)	136
MluCI	AATT	4 cut(s)	37, 52, 392, 554
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	156, 181, 189, 191, 504, 505, 613
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	36, 377, 557
MslI	CAYNNNNRTG	1 cut(s)	107
MspR9I	CCNGG	3 cut(s)	260, 409, 590
Mva1269I	GAATGC	2 cut(s)	156, 639
MvaI	CCWGG	3 cut(s)	260, 409, 590
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	2 cut(s)	26, 490
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	272
PctI	GAATGC	2 cut(s)	156, 639
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	177, 335
Pfl23II	CGTACG	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	580
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	3 cut(s)	258, 407, 588
PspGI	CCWGG	3 cut(s)	258, 407, 588
PspLI	CGTACG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	622
PspPPI	RGGWCCY	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	63
RsaI	GTAC	3 cut(s)	47, 208, 582
RsaNI	GTAC	3 cut(s)	46, 207, 581
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	36, 377, 557
Sau3AI	GATC	2 cut(s)	26, 490
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	260, 409, 590
SexAI	ACCWGGT	1 cut(s)	407
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	37, 52, 392, 554
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	1 cut(s)	616
StyD4I	CCNGG	3 cut(s)	258, 407, 588
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	3 cut(s)	348, 582, 586
TaqI	TCGA	2 cut(s)	25, 147
TasI	AATT	4 cut(s)	37, 52, 392, 554
TfiI	GAWTC	2 cut(s)	177, 335
Tru1I	TTAA	3 cut(s)	36, 377, 557
Tru9I	TTAA	3 cut(s)	36, 377, 557
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	348, 467, 486, 632
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	622
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.