Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Reverse (-)

89043925 .. 89057905

Gene Structure 13981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG665400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4113 bp

ATGGAGATTTCACTGATATTTGGGAAACCTTTCCATCTACTGAGAAACCTCGTCGCCATGGAAGAGTGTGATTCGATGGGTCCCCATCAGTATAAGATTACCTCTTATTACAGGATCATGAATGATCTTATTAAGTCAACCAAAGATGTGGAGCTTCTCATTGAAAAAGGCATTCTTCCAAGGGTCGGCATTAGCAAGGAGGAGTTGGTTGGTTTCTTTAATGACATTTGCAACAATACTGTCACAACCTCATCCTCTTCTGCGTCATTTGTTGAAATTTCCAGAATCCAGACCTCTCTACTGCGGCCCCGACCTCTTCACCATAATCGACCTCTGTATCGTTCTTTCACTCTTCACGCGCACGCGCTTAGACTAACCCGATCGGTTTTCAGATCGACGACCGGTACCGGAATTTCATCTTCAATCCAGGAAACGGGTTCAAGCATGGATTCGTATACACTTAAGTCCATGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACCTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAGGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTTACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCGATATTGCACTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGGACCTTGCGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACGCCCCAGCAAAAAATGATTTTCTATTTGAAAAGCGCCTTCAAAACTATATTTTCGATATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTCAACTAGAAAAGGTGCACAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGCAATCTCATTGAAAGTCTTTTTCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGATGTGTGGGAGGGCAGGTCGCCCACCTTTTGATGATACAGGAATGGTTATAATCATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGCCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAACCACTAGAACCTGGGAGGCTGATGACGAAGTACTACTTGAAATTTGACACAATGAAATACATTATTCAGACACATGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGATAAAGGGAAGCGAAAAAAGCGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGACTGGTGATCCATCGGTTCATGATTTGTCCCTTACCCAGGATATGAACTCCATATGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAGAATTACAAAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTTGCTGAGGTTGATCCTAGGAGAATTGAGATAGTCACTGGTCGAAAATACCCATATGGGAACCACATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGAAGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTGGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGAGTTGATGAATTCTCGAGCCCCTATAGCGCAACAGTTCTCCTGTCAAATCCCCAACAAGGAAAGCTGACTGTTAAGGCTGATCTTATATTTGAAGAATACATTGGTATTGATCTAAACCAGGAGCTTATCTTAATGAAGAAAAGCAATTTAAGTGCAAATAACAAACGAGGAAAAAAAGCACCCTCTTTTCCTCTACCTGAGGAAGTATGTATCATAGAAGATGATATTTATGAAGGCCCAAGTGAAGTGCTTCCAAACTCGACGAAATCCAAAAGGGTAGATGGTCCCATGCCCAGTTTCAAGCTTCTAGATGGAGACTCTGAAGAAGATGAGGTTGCCAACAAAGTTCATGAAGATGAGATTGCTGCCAAATTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCCTCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCAAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACAACATCTTTCTAGTATCAAAAATCATCCAAATCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGCTGGGCCTCATACTGACCCTGATGTCAAACCTCTAACAGGAGAAACAATATTCGAGCACATACGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCAGGGATATTACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTGTCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGAAGCTCCTGCAACCATCATGGAATATTGAATGCTTCTCCCGGAGGTTTAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCTGAAGCGACCTGCAGATCCAGCAAGCACTATGGAGAATACTAGGAAGAAACATCAACACTCTCCGATTGTACCACCAAGGCACTGCTCGTTGACAGCAGCTGGAAAATCCAGAGAAGTAGAAACATTTCTTGGGTTTGAGAGTTCGTCTAGTTACCACTTTCCTATAGCCTATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:0140098 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HHH_5 Helicase_C PPR Sec63

Protein Analysis

1370

Amino Acids

154.83

Weight (kDa)

8.65

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	13 - 88	3.7e-16	Plant protein of unknown function
DEAD	PF00270	175 - 364	1.7e-29	DEAD/DEAH box helicase
ResIII	PF04851	186 - 321	2.8e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	482 - 561	2.8e-08	Helicase conserved C-terminal domain
WHD_SNRNP200	PF23445	593 - 672	6.1e-12	Winged Helix-turn-helix domain
Sec63	PF02889	682 - 996	2e-47	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1712
AasI	GACNNNNNNGTC	1 cut(s)	3590
Acc36I	ACCTGC	2 cut(s)	1667, 3952
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	2 cut(s)	404, 1111
AccB7I	CCANNNNNTGG	1 cut(s)	2543
AccBSI	CCGCTC	1 cut(s)	1274
AccI	GTMKAC	3 cut(s)	455, 1629, 2239
AccII	CGCG	4 cut(s)	359, 365, 877, 885
AccIII	TCCGGA	1 cut(s)	3818
AciI	CCGC	5 cut(s)	304, 877, 1097, 1272, 2753
AclWI	GGATC	7 cut(s)	122, 769, 953, 1494, 2336, 2606, 3944
AcuI	CTGAAG	4 cut(s)	2765, 3207, 3459, 3956
AfaI	GTAC	4 cut(s)	406, 1977, 2075, 4005
AfeI	AGCGCT	1 cut(s)	1036
AflII	CTTAAG	2 cut(s)	461, 1514
AgeI	ACCGGT	1 cut(s)	401
AjnI	CCWGG	7 cut(s)	426, 815, 2053, 2370, 2536, 2838, 2982
AjuI	GAANNNNNNNTTGG	4 cut(s)	2949, 2981, 4047, 4079
AleI	CACNNNNGTG	2 cut(s)	1467, 3288
AloI	GAACNNNNNNTCC	2 cut(s)	3402, 3434
Alw21I	GWGCWC	5 cut(s)	1306, 1541, 1877, 3382, 3627
Alw26I	GTCTC	4 cut(s)	2588, 2679, 2688, 3174
Alw44I	GTGCAC	2 cut(s)	1302, 1537
AlwI	GGATC	7 cut(s)	122, 769, 953, 1494, 2336, 2606, 3944
AlwNI	CAGNNNCTG	1 cut(s)	4034
Ama87I	CYCGRG	2 cut(s)	765, 2878
Aor13HI	TCCGGA	1 cut(s)	3818
Aor51HI	AGCGCT	1 cut(s)	1036
AoxI	GGCC	6 cut(s)	305, 1151, 1341, 1471, 3100, 3572
ApaLI	GTGCAC	2 cut(s)	1302, 1537
ApeKI	GCWGC	6 cut(s)	1313, 1999, 2127, 3230, 3542, 4031
AsiGI	ACCGGT	1 cut(s)	401
Asp700I	GAANNNNTTC	4 cut(s)	29, 540, 3114, 4059
Asp718I	GGTACC	1 cut(s)	404
AspA2I	CCTAGG	1 cut(s)	2615
AspLEI	GCGC	7 cut(s)	361, 367, 586, 1037, 1221, 2193, 2894
AspS9I	GGNCC	8 cut(s)	80, 306, 747, 1090, 3101, 3149, 3398, 3572
AsuC2I	CCSGG	3 cut(s)	1908, 2729, 3861
AsuHPI	GGTGA	7 cut(s)	311, 1532, 2273, 2351, 2563, 2767, 3667
AsuNHI	GCTAGC	1 cut(s)	2749
AvaI	CYCGRG	2 cut(s)	765, 2878
AvaII	GGWCC	5 cut(s)	80, 747, 1090, 3149, 3398
AvrII	CCTAGG	1 cut(s)	2615
AxyI	CCTNAGG	1 cut(s)	3063
BaeGI	GKGCMC	2 cut(s)	1306, 1541
BaeI	ACNNNNGTAYC	2 cut(s)	320, 353
BanI	GGYRCC	2 cut(s)	404, 1111
BanII	GRGCYC	2 cut(s)	2885, 3357
BauI	CACGAG	2 cut(s)	963, 3381
Bbv12I	GWGCWC	5 cut(s)	1306, 1541, 1877, 3382, 3627
BbvCI	CCTCAGC	2 cut(s)	2163, 2604
BbvI	GCAGC	6 cut(s)	1325, 2011, 2139, 3217, 3529, 4043
BceAI	ACGGC	2 cut(s)	2142, 3737
BcgI	CGANNNNNNTGC	2 cut(s)	2553, 2587
BciT130I	CCWGG	7 cut(s)	428, 817, 2055, 2372, 2538, 2840, 2984
BciVI	GTATCC	1 cut(s)	2172
BclI	TGATCA	1 cut(s)	3657
BcnI	CCSGG	3 cut(s)	1908, 2729, 3861
BcoDI	GTCTC	4 cut(s)	2588, 2679, 2688, 3174
BfmI	CTRYAG	7 cut(s)	1658, 1815, 2125, 2401, 2887, 3945, 4098
BfoI	RGCGCY	3 cut(s)	587, 1038, 1222
BfrI	CTTAAG	2 cut(s)	461, 1514
BfuAI	ACCTGC	2 cut(s)	1667, 3952
BfuI	GTATCC	1 cut(s)	2172
BisI	GCNGC	7 cut(s)	305, 1314, 2000, 2128, 3231, 3543, 4032
BlnI	CCTAGG	1 cut(s)	2615
BlpI	GCTNAGC	1 cut(s)	3538
BlsI	GCNGC	7 cut(s)	306, 1315, 2001, 2129, 3232, 3544, 4033
BmcAI	AGTACT	1 cut(s)	2075
Bme18I	GGWCC	5 cut(s)	80, 747, 1090, 3149, 3398
BmeT110I	CYCGRG	2 cut(s)	765, 2878
BmgT120I	GGNCC	8 cut(s)	80, 306, 747, 1090, 3101, 3149, 3398, 3572
BmrI	ACTGGG	1 cut(s)	3153
BmsI	GCATC	5 cut(s)	856, 2011, 2128, 2405, 2460
BmtI	GCTAGC	1 cut(s)	2753
BmuI	ACTGGG	1 cut(s)	3153
BplI	GAGNNNNNCTC	2 cut(s)	3870, 3902
Bpu10I	CCTNAGC	4 cut(s)	1394, 2163, 2186, 2604
Bpu1102I	GCTNAGC	1 cut(s)	3538
BpuEI	CTTGAG	2 cut(s)	1091, 1466
BpuMI	CCSGG	3 cut(s)	1908, 2729, 3861
BsaAI	YACGTR	1 cut(s)	3290
BsaBI	GATNNNNATC	1 cut(s)	1491
BsaWI	WCCGGW	6 cut(s)	401, 407, 791, 3400, 3652, 3818
BsaXI	ACNNNNNCTCC	8 cut(s)	1663, 1693, 2766, 2796, 3402, 3432, 3671, 3701
Bse118I	RCCGGY	2 cut(s)	401, 481
Bse1I	ACTGG	4 cut(s)	595, 2341, 2641, 3159
Bse21I	CCTNAGG	1 cut(s)	3063
Bse3DI	GCAATG	2 cut(s)	2200, 3880
Bse8I	GATNNNNATC	1 cut(s)	1491
BseAI	TCCGGA	1 cut(s)	3818
BseBI	CCWGG	7 cut(s)	428, 817, 2055, 2372, 2538, 2840, 2984
BseGI	GGATG	8 cut(s)	251, 664, 898, 1769, 1872, 2512, 3520, 3565
BseJI	GATNNNNATC	1 cut(s)	1491
BseMI	GCAATG	2 cut(s)	2200, 3880
BseNI	ACTGG	4 cut(s)	595, 2341, 2641, 3159
BseRI	GAGGAG	2 cut(s)	215, 3692
BseSI	GKGCMC	2 cut(s)	1306, 1541
BseXI	GCAGC	6 cut(s)	1325, 2011, 2139, 3217, 3529, 4043
BseYI	CCCAGC	2 cut(s)	1189, 3569
Bsh1236I	CGCG	4 cut(s)	359, 365, 877, 885
Bsh1285I	CGRYCG	2 cut(s)	383, 402
BshFI	GGCC	6 cut(s)	307, 1153, 1343, 1473, 3102, 3574
BshNI	GGYRCC	2 cut(s)	404, 1111
BshTI	ACCGGT	1 cut(s)	401
BsiEI	CGRYCG	2 cut(s)	383, 402
BsiHKAI	GWGCWC	5 cut(s)	1306, 1541, 1877, 3382, 3627
BsiHKCI	CYCGRG	2 cut(s)	765, 2878
BslFI	GGGAC	3 cut(s)	66, 2347, 3135
BsmAI	GTCTC	4 cut(s)	2588, 2679, 2688, 3174
BsmFI	GGGAC	3 cut(s)	66, 2347, 3135
BsmI	GAATGC	4 cut(s)	171, 542, 2729, 3856
BsnI	GGCC	6 cut(s)	307, 1153, 1343, 1473, 3102, 3574
BsoBI	CYCGRG	2 cut(s)	765, 2878
Bsp1286I	GDGCHC	7 cut(s)	1306, 1541, 1877, 2885, 3357, 3382, 3627
Bsp13I	TCCGGA	1 cut(s)	3818
Bsp1407I	TGTACA	1 cut(s)	1975
Bsp1720I	GCTNAGC	1 cut(s)	3538
Bsp19I	CCATGG	2 cut(s)	57, 468
BspACI	CCGC	5 cut(s)	304, 877, 1097, 1272, 2753
BspANI	GGCC	6 cut(s)	307, 1153, 1343, 1473, 3102, 3574
BspEI	TCCGGA	1 cut(s)	3818
BspFNI	CGCG	4 cut(s)	359, 365, 877, 885
BspHI	TCATGA	5 cut(s)	117, 1716, 2353, 2851, 3214
BspMAI	CTGCAG	3 cut(s)	1819, 2129, 3949
BspMI	ACCTGC	2 cut(s)	1667, 3952
BspOI	GCTAGC	1 cut(s)	2753
BspPI	GGATC	7 cut(s)	122, 769, 953, 1494, 2336, 2606, 3944
BspQI	GCTCTTC	1 cut(s)	2148
BspT107I	GGYRCC	2 cut(s)	404, 1111
BspTI	CTTAAG	2 cut(s)	461, 1514
BsrBI	CCGCTC	1 cut(s)	1274
BsrDI	GCAATG	2 cut(s)	2200, 3880
BsrFI	RCCGGY	2 cut(s)	401, 481
BsrGI	TGTACA	1 cut(s)	1975
BsrI	ACTGG	4 cut(s)	595, 2341, 2641, 3159
BssAI	RCCGGY	2 cut(s)	401, 481
BssNAI	GTATAC	1 cut(s)	456
BssSI	CACGAG	2 cut(s)	963, 3381
BssT1I	CCWWGG	7 cut(s)	57, 179, 468, 1120, 2615, 3357, 4010
Bst1107I	GTATAC	1 cut(s)	456
Bst2BI	CACGAG	2 cut(s)	963, 3381
Bst2UI	CCWGG	7 cut(s)	428, 817, 2055, 2372, 2538, 2840, 2984
Bst6I	CTCTTC	6 cut(s)	57, 262, 321, 357, 1720, 2148
BstAFI	CTTAAG	2 cut(s)	461, 1514
BstAPI	GCANNNNNTGC	1 cut(s)	777
BstAUI	TGTACA	1 cut(s)	1975
BstBAI	YACGTR	1 cut(s)	3290
BstC8I	GCNNGC	5 cut(s)	363, 483, 1008, 2751, 3958
BstDSI	CCRYGG	2 cut(s)	57, 468
BstENI	CCTNNNNNAGG	3 cut(s)	1119, 2369, 3603
BstF5I	GGATG	8 cut(s)	251, 664, 898, 1769, 1872, 2512, 3520, 3565
BstFNI	CGCG	4 cut(s)	359, 365, 877, 885
BstH2I	RGCGCY	3 cut(s)	587, 1038, 1222
BstHHI	GCGC	7 cut(s)	361, 367, 586, 1037, 1221, 2193, 2894
BstMAI	GTCTC	4 cut(s)	2588, 2679, 2688, 3174
BstMCI	CGRYCG	2 cut(s)	383, 402
BstNI	CCWGG	7 cut(s)	428, 817, 2055, 2372, 2538, 2840, 2984
BstNSI	RCATGY	3 cut(s)	501, 2120, 3904
BstSFI	CTRYAG	7 cut(s)	1658, 1815, 2125, 2401, 2887, 3945, 4098
BstSLI	GKGCMC	2 cut(s)	1306, 1541
BstUI	CGCG	4 cut(s)	359, 365, 877, 885
BstV1I	GCAGC	6 cut(s)	1325, 2011, 2139, 3217, 3529, 4043
BstX2I	RGATCY	2 cut(s)	761, 3949
BstXI	CCANNNNNNTGG	2 cut(s)	148, 758
BstYI	RGATCY	2 cut(s)	761, 3949
BstZ17I	GTATAC	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	3063
BsuI	GTATCC	1 cut(s)	2172
BsuRI	GGCC	6 cut(s)	307, 1153, 1343, 1473, 3102, 3574
BtgI	CCRYGG	2 cut(s)	57, 468
BtsCI	GGATG	8 cut(s)	251, 664, 898, 1769, 1872, 2512, 3520, 3565
BtsI	GCAGTG	3 cut(s)	1423, 1652, 4015
BtsIMutI	CAGTG	7 cut(s)	11, 1423, 1652, 2223, 2634, 2759, 4015
BveI	ACCTGC	2 cut(s)	1667, 3952
Cac8I	GCNNGC	5 cut(s)	363, 483, 1008, 2751, 3958
CaiI	CAGNNNCTG	1 cut(s)	4034
CciI	TCATGA	5 cut(s)	117, 1716, 2353, 2851, 3214
CfoI	GCGC	7 cut(s)	361, 367, 586, 1037, 1221, 2193, 2894
Cfr10I	RCCGGY	2 cut(s)	401, 481
Cfr13I	GGNCC	8 cut(s)	80, 306, 747, 1090, 3101, 3149, 3398, 3572
CseI	GACGC	1 cut(s)	252
CsiI	ACCWGGT	1 cut(s)	2838
Csp6I	GTAC	4 cut(s)	405, 1976, 2074, 4004
CspAI	ACCGGT	1 cut(s)	401
CviQI	GTAC	4 cut(s)	405, 1976, 2074, 4004
DrdI	GACNNNNNNGTC	1 cut(s)	3590
DseDI	GACNNNNNNGTC	1 cut(s)	3590
Eam1104I	CTCTTC	6 cut(s)	57, 262, 321, 357, 1720, 2148
EarI	CTCTTC	6 cut(s)	57, 262, 321, 357, 1720, 2148
Eco130I	CCWWGG	7 cut(s)	57, 179, 468, 1120, 2615, 3357, 4010
Eco147I	AGGCCT	1 cut(s)	1153
Eco24I	GRGCYC	2 cut(s)	2885, 3357
Eco32I	GATATC	2 cut(s)	1243, 3916
Eco47I	GGWCC	5 cut(s)	80, 747, 1090, 3149, 3398
Eco47III	AGCGCT	1 cut(s)	1036
Eco57I	CTGAAG	4 cut(s)	2765, 3207, 3459, 3956
Eco81I	CCTNAGG	1 cut(s)	3063
Eco88I	CYCGRG	2 cut(s)	765, 2878
EcoNI	CCTNNNNNAGG	3 cut(s)	1119, 2369, 3603
EcoO109I	RGGNCCY	2 cut(s)	80, 1090
EcoRI	GAATTC	1 cut(s)	2873
EcoRII	CCWGG	7 cut(s)	426, 815, 2053, 2370, 2536, 2838, 2982
EcoRV	GATATC	2 cut(s)	1243, 3916
EcoT14I	CCWWGG	7 cut(s)	57, 179, 468, 1120, 2615, 3357, 4010
EcoT22I	ATGCAT	1 cut(s)	2420
EcoT38I	GRGCYC	2 cut(s)	2885, 3357
ErhI	CCWWGG	7 cut(s)	57, 179, 468, 1120, 2615, 3357, 4010
FalI	AAGNNNNNCTT	8 cut(s)	159, 191, 1387, 1419, 2063, 2095, 2127, 2159
FaqI	GGGAC	3 cut(s)	66, 2347, 3135
FauNDI	CATATG	3 cut(s)	1959, 2387, 2653
FbaI	TGATCA	1 cut(s)	3657
FblI	GTMKAC	3 cut(s)	455, 1629, 2239
Fnu4HI	GCNGC	7 cut(s)	305, 1314, 2000, 2128, 3231, 3543, 4032
FokI	GGATG	8 cut(s)	238, 671, 905, 1776, 1879, 2519, 3507, 3572
FriOI	GRGCYC	2 cut(s)	2885, 3357
Fsp4HI	GCNGC	7 cut(s)	305, 1314, 2000, 2128, 3231, 3543, 4032
GlaI	GCGC	7 cut(s)	360, 366, 585, 1036, 1220, 2192, 2893
GluI	GCNGC	7 cut(s)	305, 1314, 2000, 2128, 3231, 3543, 4032
GsaI	CCCAGC	2 cut(s)	1193, 3573
HaeII	RGCGCY	3 cut(s)	587, 1038, 1222
HaeIII	GGCC	6 cut(s)	307, 1153, 1343, 1473, 3102, 3574
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	7 cut(s)	361, 367, 586, 1037, 1221, 2193, 2894
Hin6I	GCGC	7 cut(s)	359, 365, 584, 1035, 1219, 2191, 2892
HinP1I	GCGC	7 cut(s)	359, 365, 584, 1035, 1219, 2191, 2892
HincII	GTYRAC	3 cut(s)	138, 2240, 4026
HindII	GTYRAC	3 cut(s)	138, 2240, 4026
HindIII	AAGCTT	4 cut(s)	1401, 2204, 3167, 3392
HphI	GGTGA	7 cut(s)	311, 1532, 2273, 2351, 2563, 2767, 3667
Hpy99I	CGWCG	3 cut(s)	56, 400, 3130
HpyAV	CCTTC	4 cut(s)	727, 1232, 2554, 3092
HpyCH4IV	ACGT	3 cut(s)	3289, 3376, 3552
HpySE526I	ACGT	3 cut(s)	3289, 3376, 3552
HspAI	GCGC	7 cut(s)	359, 365, 584, 1035, 1219, 2191, 2892
KflI	GGGWCCC	1 cut(s)	80
Kpn2I	TCCGGA	1 cut(s)	3818
KpnI	GGTACC	1 cut(s)	408
KroI	GCCGGC	1 cut(s)	481
KroNI	GCCGGC	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	3657
LguI	GCTCTTC	1 cut(s)	2148
LmnI	GCTCC	9 cut(s)	151, 490, 784, 968, 1804, 2456, 2986, 3830, 3878
Lsp1109I	GCAGC	6 cut(s)	1325, 2011, 2139, 3217, 3529, 4043
LweI	GCATC	5 cut(s)	856, 2011, 2128, 2405, 2460
MabI	ACCWGGT	1 cut(s)	2838
MaeII	ACGT	3 cut(s)	3289, 3376, 3552
MaeIII	GTNAC	9 cut(s)	241, 871, 1418, 2551, 2632, 2755, 3259, 3896, 4085
MbiI	CCGCTC	1 cut(s)	1274
MfeI	CAATTG	1 cut(s)	1784
MflI	RGATCY	2 cut(s)	761, 3949
MhlI	GDGCHC	7 cut(s)	1306, 1541, 1877, 2885, 3357, 3382, 3627
MlyI	GAGTC	4 cut(s)	1635, 2681, 3176, 3695
Mph1103I	ATGCAT	1 cut(s)	2420
MroI	TCCGGA	1 cut(s)	3818
MroNI	GCCGGC	1 cut(s)	481
MroXI	GAANNNNTTC	4 cut(s)	29, 540, 3114, 4059
MslI	CAYNNNNRTG	7 cut(s)	561, 575, 1411, 1467, 1743, 3219, 3288
MspA1I	CMGCKG	2 cut(s)	3542, 4034
MspCI	CTTAAG	2 cut(s)	461, 1514
MunI	CAATTG	1 cut(s)	1784
Mva1269I	GAATGC	4 cut(s)	171, 542, 2729, 3856
MvaI	CCWGG	7 cut(s)	428, 817, 2055, 2372, 2538, 2840, 2984
MvnI	CGCG	4 cut(s)	359, 365, 877, 885
NaeI	GCCGGC	1 cut(s)	483
NciI	CCSGG	3 cut(s)	1908, 2729, 3861
NcoI	CCATGG	2 cut(s)	57, 468
NdeI	CATATG	3 cut(s)	1959, 2387, 2653
NgoMIV	GCCGGC	1 cut(s)	481
NheI	GCTAGC	1 cut(s)	2749
NmuCI	GTSAC	6 cut(s)	241, 1418, 2551, 2632, 2755, 3259
NsiI	ATGCAT	1 cut(s)	2420
NspI	RCATGY	3 cut(s)	501, 2120, 3904
OliI	CACNNNNGTG	2 cut(s)	1467, 3288
PaeR7I	CTCGAG	1 cut(s)	2878
PagI	TCATGA	5 cut(s)	117, 1716, 2353, 2851, 3214
PceI	AGGCCT	1 cut(s)	1153
PciSI	GCTCTTC	1 cut(s)	2148
PctI	GAATGC	4 cut(s)	171, 542, 2729, 3856
PdiI	GCCGGC	1 cut(s)	483
PdmI	GAANNNNTTC	4 cut(s)	29, 540, 3114, 4059
PflMI	CCANNNNNTGG	1 cut(s)	2543
PfoI	TCCNGGA	3 cut(s)	426, 1906, 3859
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	7 cut(s)	306, 1315, 2001, 2129, 3232, 3544, 4033
Ple19I	CGATCG	1 cut(s)	383
PleI	GAGTC	4 cut(s)	1634, 2680, 3176, 3694
PpsI	GAGTC	4 cut(s)	1634, 2680, 3176, 3694
Ppu21I	YACGTR	1 cut(s)	3290
PpuMI	RGGWCCY	2 cut(s)	80, 1090
PsiI	TTATAA	1 cut(s)	1712
Psp5II	RGGWCCY	2 cut(s)	80, 1090
Psp6I	CCWGG	7 cut(s)	426, 815, 2053, 2370, 2536, 2838, 2982
PspFI	CCCAGC	2 cut(s)	1189, 3569
PspGI	CCWGG	7 cut(s)	426, 815, 2053, 2370, 2536, 2838, 2982
PspPI	GGNCC	8 cut(s)	80, 306, 747, 1090, 3101, 3149, 3398, 3572
PspPPI	RGGWCCY	2 cut(s)	80, 1090
PstI	CTGCAG	3 cut(s)	1819, 2129, 3949
PstNI	CAGNNNCTG	1 cut(s)	4034
PsuI	RGATCY	2 cut(s)	761, 3949
PvuI	CGATCG	1 cut(s)	383
PvuII	CAGCTG	2 cut(s)	3542, 4034
RsaI	GTAC	4 cut(s)	406, 1977, 2075, 4005
RsaNI	GTAC	4 cut(s)	405, 1976, 2074, 4004
RseI	CAYNNNNRTG	7 cut(s)	561, 575, 1411, 1467, 1743, 3219, 3288
SalI	GTCGAC	1 cut(s)	2238
SapI	GCTCTTC	1 cut(s)	2148
SatI	GCNGC	7 cut(s)	305, 1314, 2000, 2128, 3231, 3543, 4032
Sau96I	GGNCC	8 cut(s)	80, 306, 747, 1090, 3101, 3149, 3398, 3572
ScaI	AGTACT	1 cut(s)	2075
SchI	GAGTC	4 cut(s)	1635, 2681, 3176, 3695
SduI	GDGCHC	7 cut(s)	1306, 1541, 1877, 2885, 3357, 3382, 3627
SexAI	ACCWGGT	1 cut(s)	2838
SfaNI	GCATC	5 cut(s)	856, 2011, 2128, 2405, 2460
SfcI	CTRYAG	7 cut(s)	1658, 1815, 2125, 2401, 2887, 3945, 4098
Sfr274I	CTCGAG	1 cut(s)	2878
SinI	GGWCC	5 cut(s)	80, 747, 1090, 3149, 3398
SlaI	CTCGAG	1 cut(s)	2878
SmiMI	CAYNNNNRTG	7 cut(s)	561, 575, 1411, 1467, 1743, 3219, 3288
SmlI	CTYRAG	5 cut(s)	461, 1106, 1481, 1514, 2878
SmoI	CTYRAG	5 cut(s)	461, 1106, 1481, 1514, 2878
SseBI	AGGCCT	1 cut(s)	1153
SsiI	CCGC	5 cut(s)	304, 877, 1097, 1272, 2753
SspI	AATATT	4 cut(s)	1084, 1256, 3618, 3846
StuI	AGGCCT	1 cut(s)	1153
StyI	CCWWGG	7 cut(s)	57, 179, 468, 1120, 2615, 3357, 4010
TaiI	ACGT	3 cut(s)	3292, 3379, 3555
TaqII	GACCGA	1 cut(s)	1659
TatI	WGTACW	2 cut(s)	1975, 2073
TauI	GCSGC	1 cut(s)	307
TscAI	CASTG	7 cut(s)	18, 1423, 1659, 2230, 2641, 2766, 4022
TseFI	GTSAC	6 cut(s)	241, 1418, 2551, 2632, 2755, 3259
TseI	GCWGC	6 cut(s)	1313, 1999, 2127, 3230, 3542, 4031
Tsp45I	GTSAC	6 cut(s)	241, 1418, 2551, 2632, 2755, 3259
TspGWI	ACGGA	1 cut(s)	1817
TspRI	CASTG	7 cut(s)	18, 1423, 1659, 2230, 2641, 2766, 4022
Van91I	CCANNNNNTGG	1 cut(s)	2543
Vha464I	CTTAAG	2 cut(s)	461, 1514
VneI	GTGCAC	2 cut(s)	1302, 1537
VpaK11BI	GGWCC	5 cut(s)	80, 747, 1090, 3149, 3398
XagI	CCTNNNNNAGG	3 cut(s)	1119, 2369, 3603
XbaI	TCTAGA	1 cut(s)	3172
XceI	RCATGY	3 cut(s)	501, 2120, 3904
XhoI	CTCGAG	1 cut(s)	2878
XmaJI	CCTAGG	1 cut(s)	2615
XmiI	GTMKAC	3 cut(s)	455, 1629, 2239
XmnI	GAANNNNTTC	4 cut(s)	29, 540, 3114, 4059
ZrmI	AGTACT	1 cut(s)	2075
Zsp2I	ATGCAT	1 cut(s)	2420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.