Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017786

Physical Location & Seq

Genomic Coordinates Forward (+)

3555462 .. 3556233

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGGAATAGCACCTTCAAACAGGAGGACTCTGACTCTGACTCTGATTCACTCCTACACAAAGTTTGGAAACACTACAGATCCAACGAGTTGGCCGACATGGTTGATCCTTGCTTGAGAGATCATGAGTTTCCAGCAAAAGAGGTATCAAATGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTACTTTGAGACCATCTATGGCTGAAGTAGTTCTAATGCTAACAGCCAACAAAGAGAGAGACATTCCTATTCCAAACCAACCTCCCTTTCTAAATGCCACGACGCTAGAGCAAGCCAGCTCCATTAGGTCTAATAGCGAAAACAGCTTTGTCTCAAATACTTTAACAAAAGTTGCGACGTCCTCTCGTTGGAGTCTTCCAGCACCCCTAGTTTGGATAATAAGGGTCATGTATCAACTTACTCTTGCAGAAGTAGCAGGTTTCCCACGTCTTAAACATGTTAAGAAAAGCATGCTTGGAGGTCAGGATGGAAGCGCACGCATCACTTCAGTTTCATATAGGCGACAGAGCGCTGTCAGAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

185

Amino Acids

20.76

Weight (kDa)

8.97

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017786)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089311 RchiOBHm_Chr2g0172651
rosa_multiflora	Rmu_ssc0000092.1_g000014
rosa_rugosa	Rorug01G0489000 Rorug02G0246100
rosa_samantha	Rh2AG637000 Rh2BG650400 Rh2CG045100 Rh2CG617000 Rh2DG664500 Rh7DG136400
rosa_wichuraiana	Rw2G052710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	437
AclWI	GGATC	2 cut(s)	75, 101
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	2 cut(s)	234, 501
AcyI	GRCGYC	1 cut(s)	368
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	378, 402
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	2 cut(s)	19, 161
AjiI	CACGTC	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	309, 336
AluI	AGCT	2 cut(s)	309, 336
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	193, 243, 346
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	75, 101
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	2 cut(s)	93, 183
ApaLI	GTGCAC	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	506, 542
BaeGI	GKGCMC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	2 cut(s)	211, 491
BcoDI	GTCTC	3 cut(s)	193, 243, 346
BfaI	CTAG	2 cut(s)	296, 398
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 402
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	378, 402
BseMII	CTCAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	95, 185
BsiHKAI	GWGCWC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	378, 402
BsmAI	GTCTC	3 cut(s)	193, 243, 346
BsnI	GGCC	2 cut(s)	95, 185
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	3 cut(s)	80, 106, 121
BspANI	GGCC	2 cut(s)	95, 185
BspCNI	CTCAG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	75, 101
BspTNI	GGTCTC	1 cut(s)	193
BssMI	GATC	3 cut(s)	80, 106, 121
BssNI	GRCGYC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	303, 307, 482, 508
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	502
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	506, 542
BstKTI	GATC	3 cut(s)	83, 109, 124
BstMAI	GTCTC	3 cut(s)	193, 243, 346
BstMBI	GATC	3 cut(s)	80, 106, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 443
BstNSI	RCATGY	2 cut(s)	470, 484
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	95, 185
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	4 cut(s)	303, 307, 482, 508
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	506, 542
CseI	GACGC	1 cut(s)	301
CviAII	CATG	5 cut(s)	100, 125, 418, 467, 481
CviJI	RGCY	7 cut(s)	95, 185, 212, 236, 305, 309, 336
CviKI_1	RGCY	7 cut(s)	95, 185, 212, 236, 305, 309, 336
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	3 cut(s)	82, 108, 123
DpnII	GATC	3 cut(s)	80, 106, 121
EaeI	YGGCCR	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	193
Eco47III	AGCGCT	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	234, 501
FaeI	CATG	5 cut(s)	103, 128, 421, 470, 484
FaiI	YATR	8 cut(s)	101, 126, 209, 419, 468, 482, 526, 528
FatI	CATG	5 cut(s)	99, 124, 417, 466, 480
FokI	GGATG	1 cut(s)	509
FspBI	CTAG	2 cut(s)	296, 398
GlaI	GCGC	2 cut(s)	505, 541
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	95, 185
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	506, 542
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	5 cut(s)	103, 128, 421, 470, 484
Hin6I	GCGC	2 cut(s)	504, 540
HinP1I	GCGC	2 cut(s)	504, 540
HinfI	GANTC	5 cut(s)	29, 35, 41, 47, 382
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	4 cut(s)	34, 40, 46, 548
Hpy188III	TCNNGA	2 cut(s)	125, 494
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	2 cut(s)	295, 370
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	368, 457
HpyCH4V	TGCA	2 cut(s)	177, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 443
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	2 cut(s)	368, 457
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	103, 128, 421, 470, 484
HspAI	GCGC	2 cut(s)	504, 540
Kzo9I	GATC	3 cut(s)	80, 106, 121
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	8, 147, 167, 319, 402, 432, 479
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	296, 398
MaeII	ACGT	2 cut(s)	368, 457
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	82, 108, 123
MboI	GATC	3 cut(s)	80, 106, 121
MboII	GAAGA	2 cut(s)	149, 377
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	4 cut(s)	23, 29, 35, 391
MmeI	TCCRAC	2 cut(s)	108, 359
MnlI	CCTC	6 cut(s)	19, 136, 196, 282, 382, 482
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	3 cut(s)	353, 462, 471
MwoI	GCNNNNNNNGC	2 cut(s)	333, 443
NdeII	GATC	3 cut(s)	80, 106, 121
NlaIII	CATG	5 cut(s)	103, 128, 421, 470, 484
NspI	RCATGY	2 cut(s)	470, 484
PaeI	GCATGC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	185
PciI	ACATGT	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	4 cut(s)	23, 29, 35, 390
PpsI	GAGTC	4 cut(s)	23, 29, 35, 390
PscI	ACATGT	1 cut(s)	466
PsrI	GAACNNNNNNTAC	2 cut(s)	138, 170
PsuI	RGATCY	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	353, 462, 471
Sau3AI	GATC	3 cut(s)	80, 106, 121
SchI	GAGTC	4 cut(s)	23, 29, 35, 391
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	1 cut(s)	162
SseBI	AGGCCT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	296, 398
StuI	AGGCCT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	371, 460
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	353, 462, 471
Tru9I	TTAA	3 cut(s)	353, 462, 471
TspDTI	ATGAA	1 cut(s)	513
VneI	GTGCAC	1 cut(s)	175
XceI	RCATGY	2 cut(s)	470, 484
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	296, 398
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.