Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017786

Physical Location & Seq

Genomic Coordinates Forward (+)

79274663 .. 79275112

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG617000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGACTGCTGTTTTACATATATTGGGATAAAAGAAACAAGAGCTTATTAGACCATCTTACGCTTGGGTTTCAGGTTTGGAAACACTACAGATCAAACGAGTTGGCCGACGTGGTTGATCCTTGCTTGAGAGATCATGAGTTGCCAGCAAAAGAGGTATCAAGTGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTGCTTTGAGACCATCTATGGCTGAAGTAGTTCTAATGTTAACAGCCAACAAAGAAAGTGACATTCCCATTCCAAACCAACCTCCCTTTCTAAATGCCACGACGCTAGAGCAAGCCAGCTCCATTAGGTCTAATAGCGCAAACAGCTTCGTCTCAAATACTTTAACGAAAGTTCAGACGTCCTACACCTCATCAGAGTCTTCCACCATGCCTAGTTTGGATAATATGGGACATATATCAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

149

Amino Acids

16.64

Weight (kDa)

6.4

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017786)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089311 RchiOBHm_Chr2g0172651
rosa_multiflora	Rmu_ssc0000092.1_g000014
rosa_rugosa	Rorug01G0489000 Rorug02G0246100
rosa_samantha	Rh2AG637000 Rh2BG650400 Rh2CG045100 Rh2CG617000 Rh2DG664500 Rh7DG136400
rosa_wichuraiana	Rw2G052710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	173
AjiI	CACGTC	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	45, 321, 348
AluI	AGCT	3 cut(s)	45, 321, 348
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	205, 358
Alw44I	GTGCAC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	105, 195
ApaLI	GTGCAC	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	2 cut(s)	63, 223
BcoDI	GTCTC	2 cut(s)	205, 358
BfaI	CTAG	2 cut(s)	308, 414
BfmI	CTRYAG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	191
BshFI	GGCC	2 cut(s)	107, 197
BsiHKAI	GWGCWC	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	205, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	107, 197
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	92, 118, 133
BspANI	GGCC	2 cut(s)	107, 197
BspCNI	CTCAG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	136
BspPI	GGATC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	205
BssMI	GATC	3 cut(s)	92, 118, 133
BssNI	GRCGYC	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	147, 315, 319
BstDEI	CTNAG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	95, 121, 136
BstMAI	GTCTC	2 cut(s)	205, 358
BstMBI	GATC	3 cut(s)	92, 118, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 345
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	107, 197
BtrI	CACGTC	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	147, 315, 319
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	341
CseI	GACGC	1 cut(s)	313
CviAII	CATG	2 cut(s)	137, 409
CviJI	RGCY	8 cut(s)	45, 107, 197, 224, 248, 317, 321, 348
CviKI_1	RGCY	8 cut(s)	45, 107, 197, 224, 248, 317, 321, 348
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	3 cut(s)	94, 120, 135
DpnII	GATC	3 cut(s)	92, 118, 133
EaeI	YGGCCR	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	2 cut(s)	140, 412
FaiI	YATR	8 cut(s)	20, 22, 138, 221, 410, 428, 435, 437
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	136, 408
FspBI	CTAG	2 cut(s)	308, 414
GlaI	GCGC	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	107, 197
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	140, 412
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	398
HpaI	GTTAAC	1 cut(s)	243
Hpy166II	GTNNAC	2 cut(s)	189, 243
Hpy188I	TCNGA	2 cut(s)	378, 397
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	189, 243
Hpy99I	CGWCG	2 cut(s)	113, 307
HpyCH4IV	ACGT	2 cut(s)	111, 380
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 345
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	111, 380
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	140, 412
HspAI	GCGC	1 cut(s)	339
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	92, 118, 133
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	4 cut(s)	59, 159, 179, 331
MaeI	CTAG	2 cut(s)	308, 414
MaeII	ACGT	2 cut(s)	111, 380
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	94, 120, 135
MboI	GATC	3 cut(s)	92, 118, 133
MboII	GAAGA	2 cut(s)	161, 393
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	148, 208, 294, 400
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	2 cut(s)	242, 365
MwoI	GCNNNNNNNGC	2 cut(s)	203, 345
NdeII	GATC	3 cut(s)	92, 118, 133
NlaIII	CATG	2 cut(s)	140, 412
NmuCI	GTSAC	1 cut(s)	260
PagI	TCATGA	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PsrI	GAACNNNNNNTAC	2 cut(s)	150, 182
SaqAI	TTAA	2 cut(s)	242, 365
Sau3AI	GATC	3 cut(s)	92, 118, 133
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	174
SseBI	AGGCCT	1 cut(s)	197
SspMI	CTAG	2 cut(s)	308, 414
StuI	AGGCCT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	114, 383
TasI	AATT	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	242, 365
Tru9I	TTAA	2 cut(s)	242, 365
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 415
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	2 cut(s)	308, 414
ZraI	GACGTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.