RchiOBHm_Chr3g0453981

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016358
Physical Location & Seq
Forward (+)
4232312 .. 4233964
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42101

Sequence Viewer

Length: 519 bp
ATGGCTCATCCACAAGACCATGGCTTTTGTTCCAACAGTGCTGTGAGGCTGGCTTTGGTTATGATAGGTGTGTGTTTGGTTGGTTACACCGTACGTCAATCATTTTATTGGCGCTTTAAGGAGGGTAGTTCATGCCCTTCATGTCACTGTGATTGTTCAGAGGACTCTGTCCTCGTACCTATAGATATTATCAACGACTCATTTACAGATTGTGGTAAACATGAACCAGAAATGAAAGAGGAAATGGAGAAGGATATCATAGCATTGATGTCCGAAGAGCTAAGTTTGCAGCAGACTGTTGCCAATGAAACCTTGCAACAGAGCGAAGCACTGTTGATGAGTGCTAGGAAAGTCTCTTCACACTACCAAAAAGAAGCAGAAAAATGCACTGCAGGAGTGGAAACTTGTGAAGAAGCAAGGGAGAGGGCTCAAGCGCAACTTGCAGAAGAGCTAAAGGCTTCAGAAGTATGGGAGAGACGAGCTCGGGAGCTTGGGTGGGAAGATATGAGACTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

172

Amino Acids

19.53

Weight (kDa)

4.8

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 13 - 168 1.2e-58 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016358)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05250
malus_domestica MD04G1210200.v1.1
prunus_persica Prupe.6G331100_v2.0.a1 Prupe.6G331100_v2.0.a1
pyrus_communis pycom04g18630
rosa_chinensis RchiOBHm_Chr3g0453981
rosa_multiflora Rmu_sc0003556.1_g000034
rosa_roxburghii Rroxscaffold_6G00430800
rosa_rugosa Rorug02G0652100 Rorug02G0652200
rosa_samantha Rh3AG054700 Rh3BG056300 Rh3CG055500 Rh3DG056800
rosa_wichuraiana Rw3G004200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 93, 177
AluBI AGCT 4 cut(s) 280, 451, 482, 490
AluI AGCT 4 cut(s) 280, 451, 482, 490
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 3 cut(s) 358, 469, 502
Ama87I CYCGRG 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 289
AspLEI GCGC 2 cut(s) 114, 436
AvaI CYCGRG 1 cut(s) 483
BanII GRGCYC 2 cut(s) 430, 484
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 358, 469, 502
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 2 cut(s) 180, 390
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 466, 498
BpuEI CTTGAG 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 483
BsiWI CGTACG 1 cut(s) 91
BsmAI GTCTC 3 cut(s) 358, 469, 502
BsmBI CGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 430, 484
Bsp19I CCATGG 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 394
BspQI GCTCTTC 2 cut(s) 270, 441
BssECI CCNNGG 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 5 cut(s) 38, 91, 149, 298, 333
Bst6I CTCTTC 3 cut(s) 270, 361, 441
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 436
BstMAI GTCTC 3 cut(s) 358, 469, 502
BstMWI GCNNNNNNNGC 2 cut(s) 286, 440
BstSFI CTRYAG 2 cut(s) 180, 390
BstV1I GCAGC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 4 cut(s) 43, 145, 329, 387
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 2 cut(s) 114, 436
Csp6I GTAC 2 cut(s) 92, 176
CviAII CATG 4 cut(s) 20, 132, 141, 221
CviQI GTAC 2 cut(s) 92, 176
DdeI CTNAG 1 cut(s) 281
Eam1104I CTCTTC 3 cut(s) 270, 361, 441
EarI CTCTTC 3 cut(s) 270, 361, 441
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 2 cut(s) 430, 484
Eco32I GATATC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 482
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 430, 484
ErhI CCWWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 469
FaeI CATG 4 cut(s) 23, 135, 144, 224
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 4 cut(s) 19, 131, 140, 220
Fnu4HI GCNGC 1 cut(s) 290
FriOI GRGCYC 2 cut(s) 430, 484
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 345
GlaI GCGC 2 cut(s) 113, 435
GluI GCNGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 115
HhaI GCGC 2 cut(s) 114, 436
Hin1II CATG 4 cut(s) 23, 135, 144, 224
Hin6I GCGC 2 cut(s) 112, 434
HinP1I GCGC 2 cut(s) 112, 434
HinfI GANTC 2 cut(s) 164, 197
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 160, 274, 463
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 147, 244
HpyCH4III ACNGT 5 cut(s) 38, 91, 149, 298, 333
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 289, 316, 387, 392, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 440
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 4 cut(s) 23, 135, 144, 224
HspAI GCGC 2 cut(s) 112, 434
LguI GCTCTTC 2 cut(s) 270, 441
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 3 cut(s) 35, 240, 378
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 83, 143
MboII GAAGA 5 cut(s) 287, 348, 422, 458, 512
MhlI GDGCHC 2 cut(s) 430, 484
MlyI GAGTC 2 cut(s) 158, 191
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 39, 115, 154, 182, 232, 417
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 286, 440
NcoI CCATGG 1 cut(s) 19
NlaIII CATG 4 cut(s) 23, 135, 144, 224
NmuCI GTSAC 1 cut(s) 143
PciSI GCTCTTC 2 cut(s) 270, 441
Pfl23II CGTACG 1 cut(s) 91
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 2 cut(s) 158, 191
PpsI GAGTC 2 cut(s) 158, 191
Psp124BI GAGCTC 1 cut(s) 484
PspLI CGTACG 1 cut(s) 91
PstI CTGCAG 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 2 cut(s) 93, 177
RsaNI GTAC 2 cut(s) 92, 176
SacI GAGCTC 1 cut(s) 484
SapI GCTCTTC 2 cut(s) 270, 441
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 290
SchI GAGTC 2 cut(s) 158, 191
SduI GDGCHC 2 cut(s) 430, 484
SetI ASST 8 cut(s) 70, 97, 181, 282, 314, 453, 484, 492
SfcI CTRYAG 2 cut(s) 180, 390
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 1 cut(s) 484
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 5 cut(s) 38, 91, 149, 298, 333
TaiI ACGT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 4 cut(s) 43, 152, 336, 394
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 5 cut(s) 120, 129, 237, 248, 321
TspRI CASTG 4 cut(s) 43, 152, 336, 394
Tth111I GACNNNGTC 1 cut(s) 167
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.