Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0016358

Physical Location & Seq

Genomic Coordinates Forward (+)

147421 .. 148461

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggctcatccacaagaccatggcttttgttctaacagtgctgtgaggctggctttggttatgatcggtgtgtgtttggttggttacaccgtacgtcaatcattttattggcgctttaaggagagtagttcatgcccttcatgtcactgtgattgttcaaaggactctgtcctcgtacctatagatattatcaacgactcatttacagattgtggtaaacatgaaccagaaatgaaagaggaaatggagaaggatatcatagcattgatgtccgaagagctaagtttgcagcagactgttgccaatgaaaccttgcagcagagcgaagcacagttgatgagtgctaggaaagtctcttcacactaccaaaaagaagcagaaaaatgcactgcaggagtggaaacttgtgaagaagcaagggagagggctcaagcgcaacttgcagaagagcttaaggcttcagaagtatgggagagacgagctcgggagctcgggtgggaagatatgagacgatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068

Protein Analysis

172

Amino Acids

19.62

Weight (kDa)

5.02

Isoelectric Point (pI)

69.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016358)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05250
malus_domestica	MD04G1210200.v1.1
prunus_persica	Prupe.6G331100_v2.0.a1 Prupe.6G331100_v2.0.a1
pyrus_communis	pycom04g18630
rosa_chinensis	RchiOBHm_Chr3g0453981
rosa_multiflora	Rmu_sc0003556.1_g000034
rosa_roxburghii	Rroxscaffold_6G00430800
rosa_rugosa	Rorug02G0652100 Rorug02G0652200
rosa_samantha	Rh3AG054700 Rh3BG056300 Rh3CG055500 Rh3DG056800
rosa_wichuraiana	Rw3G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	93, 177
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	159
AluBI	AGCT	4 cut(s)	280, 451, 482, 490
AluI	AGCT	4 cut(s)	280, 451, 482, 490
Alw21I	GWGCWC	2 cut(s)	484, 492
Alw26I	GTCTC	3 cut(s)	358, 469, 502
Ama87I	CYCGRG	2 cut(s)	483, 491
ApeKI	GCWGC	2 cut(s)	289, 316
AspLEI	GCGC	2 cut(s)	114, 436
AvaI	CYCGRG	2 cut(s)	483, 491
BanII	GRGCYC	3 cut(s)	430, 484, 492
Bbv12I	GWGCWC	2 cut(s)	484, 492
BbvI	GCAGC	2 cut(s)	301, 328
BcoDI	GTCTC	3 cut(s)	358, 469, 502
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	2 cut(s)	180, 390
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	2 cut(s)	290, 317
BlsI	GCNGC	2 cut(s)	291, 318
BmeT110I	CYCGRG	2 cut(s)	483, 491
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpuEI	CTTGAG	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	301, 328
BsiHKAI	GWGCWC	2 cut(s)	484, 492
BsiHKCI	CYCGRG	2 cut(s)	483, 491
BsiWI	CGTACG	1 cut(s)	91
BsmAI	GTCTC	3 cut(s)	358, 469, 502
BsmBI	CGTCTC	2 cut(s)	469, 502
BsoBI	CYCGRG	2 cut(s)	483, 491
Bsp1286I	GDGCHC	3 cut(s)	430, 484, 492
Bsp143I	GATC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	394
BspQI	GCTCTTC	2 cut(s)	270, 441
BspTI	CTTAAG	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	5 cut(s)	38, 91, 149, 298, 333
Bst6I	CTCTTC	3 cut(s)	270, 361, 441
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 436
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	3 cut(s)	358, 469, 502
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 440
BstSFI	CTRYAG	2 cut(s)	180, 390
BstV1I	GCAGC	2 cut(s)	301, 328
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	7
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	43, 145, 387
Cac8I	GCNNGC	1 cut(s)	51
CfoI	GCGC	2 cut(s)	114, 436
Csp6I	GTAC	2 cut(s)	92, 176
CviAII	CATG	4 cut(s)	20, 132, 141, 221
CviQI	GTAC	2 cut(s)	92, 176
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	270, 361, 441
EarI	CTCTTC	3 cut(s)	270, 361, 441
Ecl136II	GAGCTC	2 cut(s)	482, 490
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	3 cut(s)	430, 484, 492
Eco32I	GATATC	1 cut(s)	256
Eco53kI	GAGCTC	2 cut(s)	482, 490
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	2 cut(s)	483, 491
EcoICRI	GAGCTC	2 cut(s)	482, 490
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	3 cut(s)	430, 484, 492
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	2 cut(s)	469, 502
FaeI	CATG	4 cut(s)	23, 135, 144, 224
FaiI	YATR	9 cut(s)	21, 62, 133, 142, 182, 222, 260, 469, 506
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	4 cut(s)	19, 131, 140, 220
Fnu4HI	GCNGC	2 cut(s)	290, 317
FriOI	GRGCYC	3 cut(s)	430, 484, 492
Fsp4HI	GCNGC	2 cut(s)	290, 317
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	2 cut(s)	113, 435
GluI	GCNGC	2 cut(s)	290, 317
HaeII	RGCGCY	1 cut(s)	115
HhaI	GCGC	2 cut(s)	114, 436
Hin1II	CATG	4 cut(s)	23, 135, 144, 224
Hin6I	GCGC	2 cut(s)	112, 434
HinP1I	GCGC	2 cut(s)	112, 434
HinfI	GANTC	2 cut(s)	164, 197
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	274, 463
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	147, 244
HpyCH4III	ACNGT	5 cut(s)	38, 91, 149, 298, 333
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	289, 316, 387, 392, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 440
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	4 cut(s)	23, 135, 144, 224
HspAI	GCGC	2 cut(s)	112, 434
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	2 cut(s)	270, 441
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	3 cut(s)	35, 240, 378
Lsp1109I	GCAGC	2 cut(s)	301, 328
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	83, 143
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	5 cut(s)	287, 348, 422, 458, 512
MhlI	GDGCHC	3 cut(s)	430, 484, 492
MlyI	GAGTC	2 cut(s)	158, 191
MnlI	CCTC	4 cut(s)	39, 182, 232, 417
MseI	TTAA	2 cut(s)	117, 453
MspCI	CTTAAG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	286, 440
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	4 cut(s)	23, 135, 144, 224
NmuCI	GTSAC	1 cut(s)	143
PciSI	GCTCTTC	2 cut(s)	270, 441
Pfl23II	CGTACG	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	291, 318
PleI	GAGTC	2 cut(s)	158, 191
PpsI	GAGTC	2 cut(s)	158, 191
Psp124BI	GAGCTC	2 cut(s)	484, 492
PspLI	CGTACG	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	394
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	2 cut(s)	93, 177
RsaNI	GTAC	2 cut(s)	92, 176
SacI	GAGCTC	2 cut(s)	484, 492
SapI	GCTCTTC	2 cut(s)	270, 441
SaqAI	TTAA	2 cut(s)	117, 453
SatI	GCNGC	2 cut(s)	290, 317
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	158, 191
SduI	GDGCHC	3 cut(s)	430, 484, 492
SetI	ASST	7 cut(s)	97, 181, 282, 314, 453, 484, 492
SfcI	CTRYAG	2 cut(s)	180, 390
SmlI	CTYRAG	2 cut(s)	429, 452
SmoI	CTYRAG	2 cut(s)	429, 452
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	2 cut(s)	484, 492
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	5 cut(s)	38, 91, 149, 298, 333
TaiI	ACGT	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	117, 453
Tru9I	TTAA	2 cut(s)	117, 453
TscAI	CASTG	3 cut(s)	43, 152, 394
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	289, 316
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	120, 129, 237, 248, 321
TspRI	CASTG	3 cut(s)	43, 152, 394
Tth111I	GACNNNGTC	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	452
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.