Rh3CG055500

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016358
Physical Location & Seq
Forward (+)
3867868 .. 3869540
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG055500.1

Sequence Viewer

Length: 648 bp
ATGATATATTCCGAGTTTGTTCACCATCGGTCAAGAATTGAGCTACAGTCAGATTTTCATTTTGTGTCCCAGCCTGCATTTTTGGGATCAAACCAGAGTTGGGTTTTGTTTCTTTTAGGGCATAGATTGATGGCTCATCCACAAGACCATGGCTTTTGTTCTAACAGTGCTGTGAGGCTGGCTTTGGTTATGATAGGTGTGTGTTTGGTTGGTTACACCGTACGTCAATCATTTTATTGGCGCTTTAAGGAGAGTAGTTCATGCCCTTCATGTCACTGTGATTGTTCAAAGGACTCTGTCCTCGTACCTATAGATATTATCAACGACTCATTTACAGATTGTGGTAAACATGAACCAGAAATGAAAGAGGAAATGGAGAAGGATATCATAGCATTGATGTCCGAAGAGCTAAGTTTGCAGCAGACTGTTGCCAATGAAACCTTGCAACAGAGCGAAGCACTGTTGATGAGTGCTAGGAAAGTCTCTTCACACTACCAAAAAGAAGCAGAAAAATGCACTGCAGGAGTGGAAACTTGTGAAGAAGCAAGGGAGAGGGCTCAAGCGCAACTTGCAGAAGAGCTTAAGGCTTCAGAAGTATGGGAGAGACGAGCTCGGGAGCTTGGGTGGGAAGATATGAGACTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

215

Amino Acids

24.67

Weight (kDa)

5.29

Isoelectric Point (pI)

67.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 56 - 211 2.2e-58 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016358)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05250
malus_domestica MD04G1210200.v1.1
prunus_persica Prupe.6G331100_v2.0.a1 Prupe.6G331100_v2.0.a1
pyrus_communis pycom04g18630
rosa_chinensis RchiOBHm_Chr3g0453981
rosa_multiflora Rmu_sc0003556.1_g000034
rosa_roxburghii Rroxscaffold_6G00430800
rosa_rugosa Rorug02G0652100 Rorug02G0652200
rosa_samantha Rh3AG054700 Rh3BG056300 Rh3CG055500 Rh3DG056800
rosa_wichuraiana Rw3G004200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 2 cut(s) 222, 306
AfiI CCNNNNNNNGG 1 cut(s) 100
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 1 cut(s) 288
AluBI AGCT 5 cut(s) 43, 409, 580, 611, 619
AluI AGCT 5 cut(s) 43, 409, 580, 611, 619
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 3 cut(s) 487, 598, 631
AlwI GGATC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 418
AspLEI GCGC 2 cut(s) 243, 565
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 612
BanII GRGCYC 2 cut(s) 559, 613
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 1 cut(s) 430
BccI CCATC 2 cut(s) 33, 124
BcoDI GTCTC 3 cut(s) 487, 598, 631
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 3 cut(s) 44, 309, 519
BfoI RGCGCY 1 cut(s) 244
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpuEI CTTGAG 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 430
BseYI CCCAGC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 1 cut(s) 612
BsiWI CGTACG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 3 cut(s) 487, 598, 631
BsmBI CGTCTC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 559, 613
Bsp143I GATC 1 cut(s) 86
Bsp19I CCATGG 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 2 cut(s) 399, 570
BspTI CTTAAG 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 6 cut(s) 48, 167, 220, 278, 427, 462
Bst6I CTCTTC 3 cut(s) 399, 490, 570
BstAFI CTTAAG 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 75, 180
BstDEI CTNAG 1 cut(s) 410
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 243, 565
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 3 cut(s) 487, 598, 631
BstMBI GATC 1 cut(s) 86
BstMWI GCNNNNNNNGC 2 cut(s) 415, 569
BstSFI CTRYAG 3 cut(s) 44, 309, 519
BstV1I GCAGC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 4 cut(s) 172, 274, 458, 516
Cac8I GCNNGC 2 cut(s) 75, 180
CfoI GCGC 2 cut(s) 243, 565
Csp6I GTAC 2 cut(s) 221, 305
CviAII CATG 4 cut(s) 149, 261, 270, 350
CviQI GTAC 2 cut(s) 221, 305
DdeI CTNAG 1 cut(s) 410
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
Eam1104I CTCTTC 3 cut(s) 399, 490, 570
EarI CTCTTC 3 cut(s) 399, 490, 570
Ecl136II GAGCTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 559, 613
Eco32I GATATC 1 cut(s) 385
Eco53kI GAGCTC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 611
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 559, 613
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 598
FaeI CATG 4 cut(s) 152, 264, 273, 353
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 52
FatI CATG 4 cut(s) 148, 260, 269, 349
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 2 cut(s) 559, 613
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 1 cut(s) 474
GlaI GCGC 2 cut(s) 242, 564
GluI GCNGC 1 cut(s) 419
GsaI CCCAGC 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 244
HhaI GCGC 2 cut(s) 243, 565
Hin1II CATG 4 cut(s) 152, 264, 273, 353
Hin6I GCGC 2 cut(s) 241, 563
HinP1I GCGC 2 cut(s) 241, 563
HinfI GANTC 2 cut(s) 293, 326
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 22, 347
Hpy188I TCNGA 4 cut(s) 13, 52, 403, 592
Hpy188III TCNNGA 2 cut(s) 33, 614
Hpy8I GTNNAC 2 cut(s) 22, 347
HpyAV CCTTC 2 cut(s) 276, 373
HpyCH4III ACNGT 6 cut(s) 48, 167, 220, 278, 427, 462
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 6 cut(s) 77, 418, 445, 516, 521, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 415, 569
HpyF3I CTNAG 1 cut(s) 410
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 4 cut(s) 152, 264, 273, 353
HspAI GCGC 2 cut(s) 241, 563
Kzo9I GATC 1 cut(s) 86
LguI GCTCTTC 2 cut(s) 399, 570
LmnI GCTCC 1 cut(s) 616
LpnPI CCDG 6 cut(s) 83, 87, 107, 164, 369, 507
Lsp1109I GCAGC 1 cut(s) 430
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 212, 272
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 5 cut(s) 416, 477, 551, 587, 641
MhlI GDGCHC 2 cut(s) 559, 613
MluCI AATT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 287, 320
MnlI CCTC 4 cut(s) 168, 311, 361, 546
MseI TTAA 2 cut(s) 246, 582
MspCI CTTAAG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 415, 569
NcoI CCATGG 1 cut(s) 148
NdeII GATC 1 cut(s) 86
NlaIII CATG 4 cut(s) 152, 264, 273, 353
NmuCI GTSAC 1 cut(s) 272
PciSI GCTCTTC 2 cut(s) 399, 570
Pfl23II CGTACG 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 420
PleI GAGTC 2 cut(s) 287, 320
PpsI GAGTC 2 cut(s) 287, 320
Psp124BI GAGCTC 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 69
PspLI CGTACG 1 cut(s) 220
PstI CTGCAG 1 cut(s) 523
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 2 cut(s) 222, 306
RsaNI GTAC 2 cut(s) 221, 305
SacI GAGCTC 1 cut(s) 613
SapI GCTCTTC 2 cut(s) 399, 570
SaqAI TTAA 2 cut(s) 246, 582
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 1 cut(s) 86
SchI GAGTC 2 cut(s) 287, 320
SduI GDGCHC 2 cut(s) 559, 613
SetI ASST 9 cut(s) 45, 199, 226, 310, 411, 443, 582, 613, 621
SfcI CTRYAG 3 cut(s) 44, 309, 519
SmlI CTYRAG 2 cut(s) 558, 581
SmoI CTYRAG 2 cut(s) 558, 581
Sse9I AATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 613
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 6 cut(s) 48, 167, 220, 278, 427, 462
TaiI ACGT 1 cut(s) 226
TaqII GACCGA 1 cut(s) 18
TasI AATT 1 cut(s) 36
Tru1I TTAA 2 cut(s) 246, 582
Tru9I TTAA 2 cut(s) 246, 582
TscAI CASTG 4 cut(s) 172, 281, 465, 523
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 6 cut(s) 47, 249, 258, 366, 377, 450
TspRI CASTG 4 cut(s) 172, 281, 465, 523
Tth111I GACNNNGTC 1 cut(s) 296
Vha464I CTTAAG 1 cut(s) 581
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.