Rh3DG056800

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016358
Physical Location & Seq
Forward (+)
3868016 .. 3869540
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG056800.1

Sequence Viewer

Length: 681 bp
ATGACAGGCCAAGCAGTCTTTCAGAAAAACAAGACTGAAACAAAAGCTCCACAATGTGCTTCTTCCAGAATTGAGCTACAGTCAGATTTTCATTTTGTGTCCCAGCCTGCATTTTTGGGATCAAACCAGAGTTGGGTTTTGTTTCTTTTAGGGCATAGATTGATGGCTCATCCACAAGACCATGGCTTTTGTTCTAACAGTGCTGTGAGGCTGGCTTTGGTTATGATAGGTGTGTGTTTGGTTGGTTACACCGTACGTCAATCATTTTATTGGCGCTTTAAGGAGAGTAGTTCATGCCCTTCATGTCACTGTGATTGTTCAAAGGACTCTGTCCTCGTACCTATAGATATTATCAACGACTCATTTACAGATTGTGGTAAACATGAACCAGAAATGAAAGAGGAAATGGAGAAGGATATCATAGCATTGATGTCCGAAGAGCTAAGTTTGCAGCAGACTGTTGCCAATGAAACCTTGCAACAGAGCGAAGCACTGTTGATGAGTGCTAGGAAAGTCTCTTCACACTACCAAAAAGAAGCAGAAAAATGCACTGCAGGAGTGGAAACTTGTGAAGAAGCAAGGGAGAGGGCTCAAGCGCAACTTGCAGAAGAGCTTAAGGCTTCAGAAGTATGGGAGAGACGAGCTCGGGAGCTTGGGTGGGAAGATATGAGACTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

226

Amino Acids

25.62

Weight (kDa)

5.33

Isoelectric Point (pI)

65.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 67 - 222 2.5e-58 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016358)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05250
malus_domestica MD04G1210200.v1.1
prunus_persica Prupe.6G331100_v2.0.a1 Prupe.6G331100_v2.0.a1
pyrus_communis pycom04g18630
rosa_chinensis RchiOBHm_Chr3g0453981
rosa_multiflora Rmu_sc0003556.1_g000034
rosa_roxburghii Rroxscaffold_6G00430800
rosa_rugosa Rorug02G0652100 Rorug02G0652200
rosa_samantha Rh3AG054700 Rh3BG056300 Rh3CG055500 Rh3DG056800
rosa_wichuraiana Rw3G004200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 606
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 2 cut(s) 255, 339
AfiI CCNNNNNNNGG 1 cut(s) 133
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 1 cut(s) 321
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 6 cut(s) 47, 76, 442, 613, 644, 652
AluI AGCT 6 cut(s) 47, 76, 442, 613, 644, 652
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 520, 631, 664
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 451
AspLEI GCGC 2 cut(s) 276, 598
AvaI CYCGRG 1 cut(s) 645
BanII GRGCYC 2 cut(s) 592, 646
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 463
BccI CCATC 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 520, 631, 664
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 3 cut(s) 77, 342, 552
BfoI RGCGCY 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
BmeT110I CYCGRG 1 cut(s) 645
BplI GAGNNNNNCTC 2 cut(s) 628, 660
BpuEI CTTGAG 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 641, 671
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 645
BsiWI CGTACG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 3 cut(s) 520, 631, 664
BsmBI CGTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 2 cut(s) 592, 646
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 181
BspANI GGCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 556
BspPI GGATC 1 cut(s) 127
BspQI GCTCTTC 2 cut(s) 432, 603
BspTI CTTAAG 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 6 cut(s) 81, 200, 253, 311, 460, 495
Bst6I CTCTTC 3 cut(s) 432, 523, 603
BstAFI CTTAAG 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 108, 213
BstDEI CTNAG 1 cut(s) 443
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 2 cut(s) 276, 598
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 3 cut(s) 520, 631, 664
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 448, 602
BstSFI CTRYAG 3 cut(s) 77, 342, 552
BstV1I GCAGC 1 cut(s) 463
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 4 cut(s) 205, 307, 491, 549
Cac8I GCNNGC 2 cut(s) 108, 213
CfoI GCGC 2 cut(s) 276, 598
Csp6I GTAC 2 cut(s) 254, 338
CviAII CATG 4 cut(s) 182, 294, 303, 383
CviQI GTAC 2 cut(s) 254, 338
DdeI CTNAG 1 cut(s) 443
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
DraIII CACNNNGTG 1 cut(s) 56
Eam1104I CTCTTC 3 cut(s) 432, 523, 603
EarI CTCTTC 3 cut(s) 432, 523, 603
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 181
Eco24I GRGCYC 2 cut(s) 592, 646
Eco32I GATATC 1 cut(s) 418
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 644
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 181
EcoT38I GRGCYC 2 cut(s) 592, 646
ErhI CCWWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 4 cut(s) 185, 297, 306, 386
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 1 cut(s) 85
FatI CATG 4 cut(s) 181, 293, 302, 382
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 2 cut(s) 592, 646
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 507
GlaI GCGC 2 cut(s) 275, 597
GluI GCNGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 1 cut(s) 9
HhaI GCGC 2 cut(s) 276, 598
Hin1II CATG 4 cut(s) 185, 297, 306, 386
Hin6I GCGC 2 cut(s) 274, 596
HinP1I GCGC 2 cut(s) 274, 596
HinfI GANTC 2 cut(s) 326, 359
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 4 cut(s) 24, 85, 436, 625
Hpy188III TCNNGA 2 cut(s) 66, 647
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 309, 406
HpyCH4III ACNGT 6 cut(s) 81, 200, 253, 311, 460, 495
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 6 cut(s) 110, 451, 478, 549, 554, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 448, 602
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 4 cut(s) 185, 297, 306, 386
HspAI GCGC 2 cut(s) 274, 596
Kzo9I GATC 1 cut(s) 119
LguI GCTCTTC 2 cut(s) 432, 603
LmnI GCTCC 2 cut(s) 52, 649
LpnPI CCDG 7 cut(s) 79, 116, 120, 140, 197, 402, 540
Lsp1109I GCAGC 1 cut(s) 463
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 245, 305
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 6 cut(s) 54, 449, 510, 584, 620, 674
MhlI GDGCHC 2 cut(s) 592, 646
MluCI AATT 1 cut(s) 69
MlyI GAGTC 2 cut(s) 320, 353
MnlI CCTC 4 cut(s) 201, 344, 394, 579
MseI TTAA 2 cut(s) 279, 615
MspCI CTTAAG 1 cut(s) 614
MwoI GCNNNNNNNGC 2 cut(s) 448, 602
NcoI CCATGG 1 cut(s) 181
NdeII GATC 1 cut(s) 119
NlaIII CATG 4 cut(s) 185, 297, 306, 386
NmuCI GTSAC 1 cut(s) 305
PciSI GCTCTTC 2 cut(s) 432, 603
Pfl23II CGTACG 1 cut(s) 253
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 2 cut(s) 320, 353
PpsI GAGTC 2 cut(s) 320, 353
Psp124BI GAGCTC 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 102
PspLI CGTACG 1 cut(s) 253
PstI CTGCAG 1 cut(s) 556
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 2 cut(s) 255, 339
RsaNI GTAC 2 cut(s) 254, 338
SacI GAGCTC 1 cut(s) 646
SapI GCTCTTC 2 cut(s) 432, 603
SaqAI TTAA 2 cut(s) 279, 615
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 1 cut(s) 119
SchI GAGTC 2 cut(s) 320, 353
SduI GDGCHC 2 cut(s) 592, 646
SfcI CTRYAG 3 cut(s) 77, 342, 552
SmlI CTYRAG 2 cut(s) 591, 614
SmoI CTYRAG 2 cut(s) 591, 614
Sse9I AATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 1 cut(s) 646
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 6 cut(s) 81, 200, 253, 311, 460, 495
TaiI ACGT 1 cut(s) 259
TasI AATT 1 cut(s) 69
Tru1I TTAA 2 cut(s) 279, 615
Tru9I TTAA 2 cut(s) 279, 615
TscAI CASTG 4 cut(s) 205, 314, 498, 556
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 6 cut(s) 80, 282, 291, 399, 410, 483
TspRI CASTG 4 cut(s) 205, 314, 498, 556
Tth111I GACNNNGTC 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 614
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.