Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017791

Physical Location & Seq

Genomic Coordinates Reverse (-)

8238387 .. 8239832

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGTCTGCTTGTAGGAAAGCTGTGTTGTTTTCACTCCTCTTCGTGGTTCTATTTGGGTATGCTACAGCCGAGTCTGAAGAAGAGGTTTCACGGAAGTTGATATCTGCTCCGCACAAGAATGTGAGAACTAATGTTATAGATGGCACTGGTAATGAGAATACCTTAGGTTTTGAGGATATAAATAATGGGATCGGTGAGACAAAGGGCGGGAACAGCAAAGTCTCAATCTCCACTGTTGCATTATTTACGCTGGCAATGGCTGCTGCCACTGGTTTAGGTGTAGTGCCATTCTTCTTTGTGGAGCTTGATCCGCAATGGGCTGGACTCTGCGCGCAATGGAATGGCTGCTGGTATTGGCTTTTCCTTATCTTCTGTCTTTACATATCTGCCCCGTCCTTGACATTTAGTTGGTGCTTCCCATTTGTGATTTTGATTCTTGCTTTTTATCATAACCACATTGCCATTACATCTTGCAGAGAGATTTGTTATCCTATTTTAGTGCATACATGCATGTTAACTGGTAGTATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

178

Amino Acids

19.65

Weight (kDa)

6.04

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017791)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459981 RchiOBHm_Chr3g0460031
rosa_laevigata	RLG00000025049
rosa_multiflora	Rmu_sc0000240.1_g000058 Rmu_sc0000240.1_g000059 Rmu_sc0013658.1_g000002 Rmu_sc0016534.1_g000009
rosa_rugosa	Rorug03G0039000
rosa_samantha	Rh3BG100500 Rh3CG102300 Rh3CG102500 Rh3DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	335
AciI	CCGC	3 cut(s)	113, 210, 314
AclWI	GGATC	2 cut(s)	200, 305
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	23, 307
AluI	AGCT	2 cut(s)	23, 307
Alw26I	GTCTC	2 cut(s)	194, 229
AlwI	GGATC	2 cut(s)	200, 305
ApeKI	GCWGC	3 cut(s)	263, 266, 348
AspLEI	GCGC	2 cut(s)	335, 337
AsuHPI	GGTGA	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	250, 253, 335
BccI	CCATC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	194, 229
BfaI	CTAG	1 cut(s)	535
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	264, 267, 349
BlsI	GCNGC	3 cut(s)	265, 268, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	154, 277, 526
Bse21I	CCTNAGG	1 cut(s)	166
Bse3DI	GCAATG	4 cut(s)	264, 323, 344, 459
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	4 cut(s)	264, 323, 344, 459
BseNI	ACTGG	3 cut(s)	154, 277, 526
BsePI	GCGCGC	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	250, 253, 335
Bsh1236I	CGCG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	194, 229
Bsp143I	GATC	2 cut(s)	192, 310
BspACI	CCGC	3 cut(s)	113, 210, 314
BspFNI	CGCG	1 cut(s)	335
BspPI	GGATC	2 cut(s)	200, 305
BsrDI	GCAATG	4 cut(s)	264, 323, 344, 459
BsrI	ACTGG	3 cut(s)	154, 277, 526
BssHII	GCGCGC	1 cut(s)	333
BssMI	GATC	2 cut(s)	192, 310
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	47, 78
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	255, 335
BstDEI	CTNAG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	2 cut(s)	335, 337
BstKTI	GATC	2 cut(s)	195, 313
BstMAI	GTCTC	2 cut(s)	194, 229
BstMBI	GATC	2 cut(s)	192, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 263, 313
BstNSI	RCATGY	2 cut(s)	513, 517
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	250, 253, 335
Bsu36I	CCTNAGG	1 cut(s)	166
BtsIMutI	CAGTG	3 cut(s)	147, 234, 270
Cac8I	GCNNGC	2 cut(s)	255, 335
CfoI	GCGC	2 cut(s)	335, 337
CviAII	CATG	2 cut(s)	510, 514
CviJI	RGCY	7 cut(s)	23, 71, 263, 307, 323, 348, 361
CviKI_1	RGCY	7 cut(s)	23, 71, 263, 307, 323, 348, 361
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	194, 312
DpnII	GATC	2 cut(s)	192, 310
Eam1104I	CTCTTC	2 cut(s)	47, 78
EarI	CTCTTC	2 cut(s)	47, 78
Eco32I	GATATC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	515
FaeI	CATG	2 cut(s)	513, 517
FaiI	YATR	9 cut(s)	63, 140, 182, 386, 453, 507, 511, 515, 530
FatI	CATG	2 cut(s)	509, 513
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	264, 267, 349
Fsp4HI	GCNGC	3 cut(s)	264, 267, 349
FspBI	CTAG	1 cut(s)	535
GlaI	GCGC	2 cut(s)	334, 336
GluI	GCNGC	3 cut(s)	264, 267, 349
HhaI	GCGC	2 cut(s)	335, 337
Hin1II	CATG	2 cut(s)	513, 517
Hin6I	GCGC	2 cut(s)	333, 335
HinP1I	GCGC	2 cut(s)	333, 335
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	74, 327, 436
HpaI	GTTAAC	1 cut(s)	519
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	242, 477, 505, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 263, 313
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	513, 517
HspAI	GCGC	2 cut(s)	333, 335
KspAI	GTTAAC	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	192, 310
LmnI	GCTCC	2 cut(s)	115, 304
LpnPI	CCDG	6 cut(s)	135, 239, 258, 309, 337, 507
Lsp1109I	GCAGC	3 cut(s)	250, 253, 335
MaeI	CTAG	1 cut(s)	535
MalI	GATC	2 cut(s)	194, 312
MboI	GATC	2 cut(s)	192, 310
MboII	GAAGA	5 cut(s)	34, 92, 95, 286, 364
MlyI	GAGTC	2 cut(s)	83, 321
MnlI	CCTC	3 cut(s)	50, 79, 169
Mph1103I	ATGCAT	1 cut(s)	515
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	216, 263, 313
NdeII	GATC	2 cut(s)	192, 310
NlaIII	CATG	2 cut(s)	513, 517
NmeAIII	GCCGAG	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	515
NspI	RCATGY	2 cut(s)	513, 517
PauI	GCGCGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	265, 268, 350
PleI	GAGTC	2 cut(s)	82, 321
PpsI	GAGTC	2 cut(s)	82, 321
PteI	GCGCGC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	3 cut(s)	264, 267, 349
Sau3AI	GATC	2 cut(s)	192, 310
SchI	GAGTC	2 cut(s)	83, 321
SetI	ASST	6 cut(s)	25, 90, 167, 172, 283, 309
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	120
SsiI	CCGC	3 cut(s)	113, 210, 314
SspMI	CTAG	1 cut(s)	535
TaaI	ACNGT	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	3 cut(s)	154, 241, 277
TseI	GCWGC	3 cut(s)	263, 266, 348
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	154, 241, 277
XceI	RCATGY	2 cut(s)	513, 517
XspI	CTAG	1 cut(s)	535
Zsp2I	ATGCAT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.