Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0017791

Physical Location & Seq

Genomic Coordinates Forward (+)

41576966 .. 41579853

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTCTTGATTCCGGCGACGACGCAGTAGCCGTACGAGCGGTCGCCCGTGCCTTTGTCGAAGGCCTTGACGATGATCCCCTTGCAGCCGCCATAGTGACCTTGGAGGAGGATGGAGAGGAGGTTCAGACTGAGCTGACCGATCTGAAGAAGAGCCTGCTTGTATTGAAGCACGATATTAGGGATGCCTCTACTGTGCAAACTCAGAGCGAAGGGAAGCCCGCGGCAAGTACTCCTAGGGGCACACCAGGGCACATCAAACCACGAGGGGTGGCTTCGAACTGGGGTGAAGTGGCCTTGGATGGTTTGATAGAGCGCAGCATATCTGATAGCATCCAAGAGAAGAATATAGCATGGTATGCTACAGCCGAGTCTGAAGAAGAGGTTTCACGGAAGTTGATATCTGCTCCGCACAAGAATGTGAGAACTAATGTTATTGATGGCACTGCAAATGACTATACCTTAGGTTTTGAGGATATAAATAATGGGATCGGTGAGACAAAGGGCGGGAACAGCAAAGTCTCAATCTCCACTGTTGCATTATTTACGCTGGCAATCGCTGCTGCCACTGGTTTAGGTGCAGTTCCATTCTTCTTTGTAGAGCTTGATCCGCAATGGGCTGGACTCTGCAATGGAATGGCTGCTGGTGTGATGTTGGCTGCAAGCTTTGATCTTATACAGGAAGGGCAAGGTCATGGGGCAGGGAATTGGGTGGTCTTCGGGATTTTAGCTGGGGGAATTTTTATTTTGCTTTGCAAGAAGTTTCTCGAACACTATGGAGAGGTTAGTATGTTGGACATTAAAGGTGCAGATGCAACTAAAGTAGTTCTTGTGATTGGAATAATGACTCTTCATTCATTTGGGAAGGAGCCCGTGTTGGGATTTCCTTTGCTTGTACATTCCAAGGGTTTCTCTCAGGGCCTTTTGGTAACTTTGGCTATTGCTGTTCACAATATACCAGAAGGATTAGCTGTAAGGATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

329

Amino Acids

34.61

Weight (kDa)

4.87

Isoelectric Point (pI)

26.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017791)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459981 RchiOBHm_Chr3g0460031
rosa_laevigata	RLG00000025049
rosa_multiflora	Rmu_sc0000240.1_g000058 Rmu_sc0000240.1_g000059 Rmu_sc0013658.1_g000002 Rmu_sc0016534.1_g000009
rosa_rugosa	Rorug03G0039000
rosa_samantha	Rh3BG100500 Rh3CG102300 Rh3CG102500 Rh3DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	224
AciI	CCGC	7 cut(s)	41, 90, 222, 224, 410, 507, 611
AclWI	GGATC	3 cut(s)	71, 497, 602
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	2 cut(s)	167, 396
AfaI	GTAC	3 cut(s)	36, 232, 897
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	5 cut(s)	136, 604, 666, 731, 971
AluI	AGCT	5 cut(s)	136, 604, 666, 731, 971
Alw26I	GTCTC	2 cut(s)	491, 526
AlwI	GGATC	3 cut(s)	71, 497, 602
AoxI	GGCC	3 cut(s)	64, 294, 919
ApeKI	GCWGC	6 cut(s)	86, 318, 560, 563, 641, 659
ApoI	RAATTY	1 cut(s)	738
AspA2I	CCTAGG	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	919
AsuHPI	GGTGA	2 cut(s)	299, 506
AsuII	TTCGAA	1 cut(s)	278
AvrII	CCTAGG	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	463
BaeGI	GKGCMC	2 cut(s)	245, 255
BanII	GRGCYC	1 cut(s)	873
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	709
BbvI	GCAGC	6 cut(s)	98, 330, 547, 550, 628, 646
BccI	CCATC	3 cut(s)	107, 296, 434
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	491, 526
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	8 cut(s)	87, 90, 225, 319, 561, 564, 642, 660
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	8 cut(s)	88, 91, 226, 320, 562, 565, 643, 661
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	919
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	175, 342, 802
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	709
Bpu14I	TTCGAA	1 cut(s)	278
BsaJI	CCNNGG	6 cut(s)	102, 222, 236, 248, 297, 903
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 860, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	2 cut(s)	287, 574
Bse21I	CCTNAGG	1 cut(s)	463
Bse3DI	GCAATG	2 cut(s)	620, 637
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	6 cut(s)	102, 222, 236, 248, 297, 903
BseGI	GGATG	4 cut(s)	118, 190, 307, 333
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMI	GCAATG	2 cut(s)	620, 637
BseMII	CTCAG	3 cut(s)	123, 218, 929
BseNI	ACTGG	2 cut(s)	287, 574
BseRI	GAGGAG	2 cut(s)	122, 134
BseSI	GKGCMC	2 cut(s)	245, 255
BseXI	GCAGC	6 cut(s)	98, 330, 547, 550, 628, 646
BseYI	CCCAGC	1 cut(s)	731
BsgI	GTGCAG	2 cut(s)	600, 828
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	66, 296, 921
BsiEI	CGRYCG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	15
BsiWI	CGTACG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	491, 526
BsnI	GGCC	3 cut(s)	66, 296, 921
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	245, 255, 873
Bsp1407I	TGTACA	1 cut(s)	895
Bsp143I	GATC	5 cut(s)	76, 142, 489, 607, 670
BspACI	CCGC	7 cut(s)	41, 90, 222, 224, 410, 507, 611
BspANI	GGCC	3 cut(s)	66, 296, 921
BspCNI	CTCAG	3 cut(s)	124, 217, 928
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	870
BspPI	GGATC	3 cut(s)	71, 497, 602
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	41
BsrDI	GCAATG	2 cut(s)	620, 637
BsrGI	TGTACA	1 cut(s)	895
BsrI	ACTGG	2 cut(s)	287, 574
BssECI	CCNNGG	6 cut(s)	102, 222, 236, 248, 297, 903
BssMI	GATC	5 cut(s)	76, 142, 489, 607, 670
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	4 cut(s)	102, 236, 297, 903
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	196, 535
Bst6I	CTCTTC	3 cut(s)	146, 375, 855
BstAPI	GCANNNNNTGC	2 cut(s)	359, 560
BstAUI	TGTACA	1 cut(s)	895
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	4 cut(s)	158, 222, 552, 664
BstDEI	CTNAG	4 cut(s)	132, 204, 463, 915
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	4 cut(s)	118, 190, 307, 333
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	5 cut(s)	79, 145, 492, 610, 673
BstMAI	GTCTC	2 cut(s)	491, 526
BstMBI	GATC	5 cut(s)	76, 142, 489, 607, 670
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 359, 513, 560, 610
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	2 cut(s)	245, 255
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	6 cut(s)	98, 330, 547, 550, 628, 646
BstV2I	GAAGAC	1 cut(s)	709
Bsu36I	CCTNAGG	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	66, 296, 921
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	4 cut(s)	118, 190, 307, 333
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	444, 531, 567
Cac8I	GCNNGC	4 cut(s)	158, 222, 552, 664
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	919
Cfr42I	CCGCGG	1 cut(s)	225
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	35, 231, 896
CviAII	CATG	2 cut(s)	354, 695
CviQI	GTAC	3 cut(s)	35, 231, 896
DdeI	CTNAG	4 cut(s)	132, 204, 463, 915
DpnI	GATC	5 cut(s)	78, 144, 491, 609, 672
DpnII	GATC	5 cut(s)	76, 142, 489, 607, 670
Eam1104I	CTCTTC	3 cut(s)	146, 375, 855
EarI	CTCTTC	3 cut(s)	146, 375, 855
Eco130I	CCWWGG	4 cut(s)	102, 236, 297, 903
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	873
Eco32I	GATATC	1 cut(s)	402
Eco57I	CTGAAG	2 cut(s)	167, 396
Eco81I	CCTNAGG	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	4 cut(s)	102, 236, 297, 903
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	4 cut(s)	102, 236, 297, 903
FaeI	CATG	2 cut(s)	357, 698
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FatI	CATG	2 cut(s)	353, 694
FauI	CCCGC	2 cut(s)	229, 500
Fnu4HI	GCNGC	8 cut(s)	87, 90, 225, 319, 561, 564, 642, 660
FokI	GGATG	4 cut(s)	125, 197, 314, 320
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	8 cut(s)	87, 90, 225, 319, 561, 564, 642, 660
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	8 cut(s)	87, 90, 225, 319, 561, 564, 642, 660
GsaI	CCCAGC	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	66, 296, 921
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	357, 698
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	4 cut(s)	11, 371, 624, 847
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	299, 506
Hpy166II	GTNNAC	1 cut(s)	949
Hpy188I	TCNGA	5 cut(s)	129, 147, 207, 328, 376
Hpy188III	TCNNGA	3 cut(s)	8, 721, 767
Hpy8I	GTNNAC	1 cut(s)	949
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	5 cut(s)	56, 206, 677, 859, 956
HpyCH4III	ACNGT	2 cut(s)	196, 535
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 359, 513, 560, 610
HpyF3I	CTNAG	4 cut(s)	132, 204, 463, 915
Hsp92II	CATG	2 cut(s)	357, 698
HspAI	GCGC	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	76, 142, 489, 607, 670
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	412, 868
Lsp1109I	GCAGC	6 cut(s)	98, 330, 547, 550, 628, 646
LweI	GCATC	3 cut(s)	175, 342, 802
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	97, 928
MalI	GATC	5 cut(s)	78, 144, 491, 609, 672
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	5 cut(s)	76, 142, 489, 607, 670
MboII	GAAGA	8 cut(s)	160, 163, 355, 389, 392, 583, 709, 842
MhlI	GDGCHC	3 cut(s)	245, 255, 873
MluCI	AATT	2 cut(s)	706, 738
MlyI	GAGTC	3 cut(s)	380, 618, 841
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	9 cut(s)	100, 103, 112, 115, 199, 260, 376, 466, 775
MseI	TTAA	1 cut(s)	801
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	38, 359, 513, 560, 610
NdeII	GATC	5 cut(s)	76, 142, 489, 607, 670
NlaIII	CATG	2 cut(s)	357, 698
NlaIV	GGNNCC	1 cut(s)	870
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	11
Pfl23II	CGTACG	1 cut(s)	34
PkrI	GCNGC	8 cut(s)	88, 91, 226, 320, 562, 565, 643, 661
PleI	GAGTC	3 cut(s)	379, 618, 841
PpsI	GAGTC	3 cut(s)	379, 618, 841
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	247
PspLI	CGTACG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	1 cut(s)	919
RsaI	GTAC	3 cut(s)	36, 232, 897
RsaNI	GTAC	3 cut(s)	35, 231, 896
RseI	CAYNNNNRTG	1 cut(s)	417
SacII	CCGCGG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	801
SatI	GCNGC	8 cut(s)	87, 90, 225, 319, 561, 564, 642, 660
Sau3AI	GATC	5 cut(s)	76, 142, 489, 607, 670
Sau96I	GGNCC	1 cut(s)	919
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	3 cut(s)	380, 618, 841
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	3 cut(s)	245, 255, 873
SfaNI	GCATC	3 cut(s)	175, 342, 802
SfcI	CTRYAG	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	706, 738
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	7 cut(s)	41, 90, 222, 224, 410, 507, 611
SspMI	CTAG	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	4 cut(s)	102, 236, 297, 903
TaaI	ACNGT	2 cut(s)	196, 535
TaqI	TCGA	3 cut(s)	60, 278, 768
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	706, 738
TatI	WGTACW	2 cut(s)	230, 895
TauI	GCSGC	2 cut(s)	92, 227
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	3 cut(s)	451, 538, 574
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	6 cut(s)	86, 318, 560, 563, 641, 659
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	842, 846
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	3 cut(s)	451, 538, 574
XapI	RAATTY	1 cut(s)	738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.