Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017791

Physical Location & Seq

Genomic Coordinates Reverse (-)

8164657 .. 8166969

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTGCTGGTGTGAAGTTGGCTGCAAGCTTTGATCTTATACAGGAAGGGCAAGGTCATGGAGCAGGGAATTGGGTGGTCTTTGGGATTTTAGCTGGGGGAATTTTTATTTTGCTTTGCAAGAAGTTTCTCGAACAATATGGAGAGGTCAGTATGTTGGACATTAAAGGTGCAGATGCAACTAAAGTAGTTCTAATGACTCTTCATTCATTTGGGAAGGGCTCTGGTGTTGGGGTTTCCTTTGCTGGTTCCAAGGGTTTCTCTCAGGGCCTTTTGGTAACTTTGGCTATTGCTGTTCACAATATACCAGAAGGATTAGCTGGGAGGCGCTCTTCCATGGTGCGGTATGGAAGGCAGCATGATGATGGCTGCGGTCCGGTGGTTCTGGCGGCGCGGTGCAGGCGGTGGTTCGTCGGCGATGGCTGTGGTGGGGGTGGGCTAGACTTGGCTAGCGGCTTGGGTCTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

156

Amino Acids

16.02

Weight (kDa)

8.78

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017791)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459981 RchiOBHm_Chr3g0460031
rosa_laevigata	RLG00000025049
rosa_multiflora	Rmu_sc0000240.1_g000058 Rmu_sc0000240.1_g000059 Rmu_sc0013658.1_g000002 Rmu_sc0016534.1_g000009
rosa_rugosa	Rorug03G0039000
rosa_samantha	Rh3BG100500 Rh3CG102300 Rh3CG102500 Rh3DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	394
AciI	CCGC	6 cut(s)	343, 372, 389, 394, 403, 453
AcsI	RAATTY	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	30, 95, 320
AluI	AGCT	3 cut(s)	30, 95, 320
Alw26I	GTCTC	1 cut(s)	467
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	5, 23, 355, 369
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	330, 394
AspS9I	GGNCC	2 cut(s)	268, 374
AsuNHI	GCTAGC	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	10, 356, 367
BccI	CCATC	2 cut(s)	359, 413
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	440, 450
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	6 cut(s)	6, 24, 356, 370, 390, 454
BlsI	GCNGC	6 cut(s)	7, 25, 357, 371, 391, 455
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	268, 374
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	166
BmtI	GCTAGC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	252, 336
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	252, 336
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	10, 356, 367
BseYI	CCCAGC	2 cut(s)	95, 320
BsgI	GTGCAG	2 cut(s)	192, 418
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	6 cut(s)	343, 372, 389, 394, 403, 453
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	453
BspQI	GCTCTTC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	252, 336
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	252, 336
Bst6I	CTCTTC	2 cut(s)	207, 337
BstC8I	GCNNGC	3 cut(s)	28, 401, 451
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	394
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	330, 394
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	3 cut(s)	10, 356, 367
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	28, 401, 451
CfoI	GCGC	2 cut(s)	330, 394
Cfr13I	GGNCC	2 cut(s)	268, 374
CpoI	CGGWCCG	1 cut(s)	374
CspI	CGGWCCG	1 cut(s)	374
CviAII	CATG	3 cut(s)	59, 337, 359
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	207, 337
EarI	CTCTTC	2 cut(s)	207, 337
Eco130I	CCWWGG	2 cut(s)	252, 336
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	252, 336
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	252, 336
FaeI	CATG	3 cut(s)	62, 340, 362
FaiI	YATR	8 cut(s)	41, 60, 141, 155, 305, 338, 348, 360
FatI	CATG	3 cut(s)	58, 336, 358
Fnu4HI	GCNGC	6 cut(s)	6, 24, 356, 370, 390, 454
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	6 cut(s)	6, 24, 356, 370, 390, 454
FspBI	CTAG	2 cut(s)	440, 450
GlaI	GCGC	2 cut(s)	329, 393
GluI	GCNGC	6 cut(s)	6, 24, 356, 370, 390, 454
GsaI	CCCAGC	2 cut(s)	99, 324
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	2 cut(s)	330, 394
Hin1II	CATG	3 cut(s)	62, 340, 362
Hin6I	GCGC	2 cut(s)	328, 392
HinP1I	GCGC	2 cut(s)	328, 392
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	4 cut(s)	41, 211, 305, 345
HpyCH4V	TGCA	5 cut(s)	26, 120, 173, 179, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	62, 340, 362
HspAI	GCGC	2 cut(s)	328, 392
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	3 cut(s)	10, 356, 367
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	440, 450
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	194, 324
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	2 cut(s)	70, 102
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	139, 318
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	1 cut(s)	34
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	62, 340, 362
NlaIV	GGNNCC	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	337
PkrI	GCNGC	6 cut(s)	7, 25, 357, 371, 391, 455
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PspFI	CCCAGC	2 cut(s)	95, 320
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	268, 374
RseI	CAYNNNNRTG	1 cut(s)	363
Rsr2I	CGGWCCG	1 cut(s)	374
RsrII	CGGWCCG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	6 cut(s)	6, 24, 356, 370, 390, 454
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	268, 374
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	6 cut(s)	32, 58, 97, 150, 172, 322
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	70, 102
SsiI	CCGC	6 cut(s)	343, 372, 389, 394, 403, 453
SspMI	CTAG	2 cut(s)	440, 450
StyI	CCWWGG	2 cut(s)	252, 336
TaqI	TCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	70, 102
TauI	GCSGC	2 cut(s)	392, 456
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	4 cut(s)	5, 23, 355, 369
TspDTI	ATGAA	2 cut(s)	194, 198
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	2 cut(s)	440, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.