Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0017791

Physical Location & Seq

Genomic Coordinates Reverse (-)

8125799 .. 8134552

Gene Structure 8754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG102300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTGGTGTACTCACGAAGGCTTTTCCCAGAGGGTAGACGAAGCCTGGAATGCACCTTCTACTGGGGATCCTATGTTGCATCTGTGTAGGAAAATTAAAGGGGTTGGCCAACAGCTACTCACTGGGGACCGGACTGTTTTTCGAAGTCGTAGGAATGAGGTGAAAGCTGTTCGGTCCCAGCTCAATGACCTTCTACAAAAGCCTTTTGACCCGGCTGATCATGTGGCCAAGATGCAGCTATCCAGGGGACAACAGGGCACATCAGACCACGAGGGGTGGCTTCGAACTGGAGAAGTGGCCTTGGATGGTTTGATAGAGCGCGGCATATCTGATAGCATCCAAGAGAAGAATATAGCGTCCGAGTCTGAAGAAGAGGTTTCACGGAGGTTGATATCTGCTCCGCACAAGAATGTGAGAACTAATGTTATTGATGGTACTGGAAATGAGAATACCTTAGGTTTTGAGGATATAAATAATGGGATCGGTGAGACAAAGGGCGGGAACAGCAAAGTCTCAATCTCCACTGTTGCATTATTTACGCTGGCAATGGCTGCTGCCACTGGTTTTAGCGGTTTAGGTGCAGTGCCATTCTTCTTTGTGGAGCTTGATCCGCAATGGGCTGGACTCTGCAATGGAATGGCTGCTGTTGTGATGTTGGCTGCAAGCTTTGATCTTATACAGGAAGGGCAAGGTCATGGAGCAGGGAATTGGGTGGTCTTTGGGATTTTAGCTGGGGGAATTTTTATTTTGCTTTGCAAGAAGTTTCTCGAACAATATGGAGAGGTTAGTATGTTGGACATTAAAGGTGCAGATGCAACTAAAGTAGTTCTAATGACTCTTCATTCATTTGGGAAGGGCTCTGGTGTTGGGGTTTCCTTTGCTGGTTCCAAGGGTTTCTCTCAGGGCCTTTTGGTAACTTTGGCTATTGCTGTTCACAATATACCAGATGGATTAGCTGTAAGGATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

323

Amino Acids

34.53

Weight (kDa)

5.92

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017791)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459981 RchiOBHm_Chr3g0460031
rosa_laevigata	RLG00000025049
rosa_multiflora	Rmu_sc0000240.1_g000058 Rmu_sc0000240.1_g000059 Rmu_sc0013658.1_g000002 Rmu_sc0016534.1_g000009
rosa_rugosa	Rorug03G0039000
rosa_samantha	Rh3BG100500 Rh3CG102300 Rh3CG102500 Rh3DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	321
AciI	CCGC	5 cut(s)	321, 401, 498, 570, 611
AclWI	GGATC	4 cut(s)	62, 75, 488, 602
AcoI	YGGCCR	2 cut(s)	106, 225
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	10, 436
AfiI	CCNNNNNNNGG	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	44, 242
AluBI	AGCT	8 cut(s)	115, 167, 181, 238, 604, 666, 731, 956
AluI	AGCT	8 cut(s)	115, 167, 181, 238, 604, 666, 731, 956
Alw26I	GTCTC	2 cut(s)	482, 517
AlwI	GGATC	4 cut(s)	62, 75, 488, 602
AoxI	GGCC	4 cut(s)	106, 225, 297, 904
ApeKI	GCWGC	5 cut(s)	235, 551, 554, 641, 659
ApoI	RAATTY	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	127, 174, 904
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	172, 497
AsuII	TTCGAA	2 cut(s)	142, 283
AvaII	GGWCC	2 cut(s)	127, 174
AxyI	CCTNAGG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	260
BalI	TGGCCA	2 cut(s)	108, 227
BamHI	GGATCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	860
BauI	CACGAG	1 cut(s)	269
BbvI	GCAGC	5 cut(s)	247, 538, 541, 628, 646
BccI	CCATC	3 cut(s)	299, 425, 941
BciT130I	CCWGG	2 cut(s)	46, 244
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	482, 517
BisI	GCNGC	6 cut(s)	236, 322, 552, 555, 642, 660
BlsI	GCNGC	6 cut(s)	237, 323, 553, 556, 643, 661
Bme1390I	CCNGG	3 cut(s)	46, 212, 244
Bme18I	GGWCC	2 cut(s)	127, 174
BmgT120I	GGNCC	3 cut(s)	127, 174, 904
BmiI	GGNNCC	4 cut(s)	69, 128, 176, 886
BmrFI	CCNGG	3 cut(s)	46, 212, 244
BmrI	ACTGGG	2 cut(s)	72, 132
BmsI	GCATC	4 cut(s)	88, 222, 345, 802
BmuI	ACTGGG	2 cut(s)	72, 132
BpmI	CTGGAG	1 cut(s)	309
Bpu14I	TTCGAA	2 cut(s)	142, 283
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	243, 300, 888
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	5 cut(s)	67, 127, 292, 442, 565
Bse21I	CCTNAGG	1 cut(s)	454
Bse3DI	GCAATG	3 cut(s)	552, 620, 637
BseBI	CCWGG	2 cut(s)	46, 244
BseDI	CCNNGG	3 cut(s)	243, 300, 888
BseGI	GGATG	2 cut(s)	310, 336
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	3 cut(s)	552, 620, 637
BseMII	CTCAG	1 cut(s)	914
BseNI	ACTGG	5 cut(s)	67, 127, 292, 442, 565
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	5 cut(s)	247, 538, 541, 628, 646
BseYI	CCCAGC	2 cut(s)	177, 731
BsgI	GTGCAG	2 cut(s)	600, 828
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	108, 227, 299, 906
BsiSI	CCGG	2 cut(s)	130, 212
BslFI	GGGAC	3 cut(s)	140, 160, 261
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	482, 517
BsmFI	GGGAC	3 cut(s)	140, 160, 261
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	108, 227, 299, 906
Bsp119I	TTCGAA	2 cut(s)	142, 283
Bsp1286I	GDGCHC	2 cut(s)	260, 860
Bsp143I	GATC	5 cut(s)	67, 217, 480, 607, 670
BspACI	CCGC	5 cut(s)	321, 401, 498, 570, 611
BspANI	GGCC	4 cut(s)	108, 227, 299, 906
BspCNI	CTCAG	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	4 cut(s)	69, 128, 176, 886
BspPI	GGATC	4 cut(s)	62, 75, 488, 602
BspT104I	TTCGAA	2 cut(s)	142, 283
BsrDI	GCAATG	3 cut(s)	552, 620, 637
BsrI	ACTGG	5 cut(s)	67, 127, 292, 442, 565
BssECI	CCNNGG	3 cut(s)	243, 300, 888
BssMI	GATC	5 cut(s)	67, 217, 480, 607, 670
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	300, 888
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	46, 244
Bst4CI	ACNGT	2 cut(s)	136, 526
Bst6I	CTCTTC	2 cut(s)	366, 843
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBI	TTCGAA	2 cut(s)	142, 283
BstC8I	GCNNGC	2 cut(s)	543, 664
BstDEI	CTNAG	2 cut(s)	454, 900
BstF5I	GGATG	2 cut(s)	310, 336
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	70, 220, 483, 610, 673
BstMAI	GTCTC	2 cut(s)	482, 517
BstMBI	GATC	5 cut(s)	67, 217, 480, 607, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 504, 551, 610
BstNI	CCWGG	2 cut(s)	46, 244
BstSCI	CCNGG	3 cut(s)	44, 210, 242
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	5 cut(s)	247, 538, 541, 628, 646
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	454
BsuRI	GGCC	4 cut(s)	108, 227, 299, 906
BtsCI	GGATG	2 cut(s)	310, 336
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	4 cut(s)	120, 522, 558, 588
Cac8I	GCNNGC	2 cut(s)	543, 664
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	127, 174, 904
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	9, 435
CviAII	CATG	2 cut(s)	221, 695
CviQI	GTAC	2 cut(s)	9, 435
DdeI	CTNAG	2 cut(s)	454, 900
DpnI	GATC	5 cut(s)	69, 219, 482, 609, 672
DpnII	GATC	5 cut(s)	67, 217, 480, 607, 670
EaeI	YGGCCR	2 cut(s)	106, 225
Eam1104I	CTCTTC	2 cut(s)	366, 843
EarI	CTCTTC	2 cut(s)	366, 843
Eco130I	CCWWGG	2 cut(s)	300, 888
Eco24I	GRGCYC	1 cut(s)	860
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	127, 174
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	44, 242
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	300, 888
EcoT38I	GRGCYC	1 cut(s)	860
ErhI	CCWWGG	2 cut(s)	300, 888
FaeI	CATG	2 cut(s)	224, 698
FaqI	GGGAC	3 cut(s)	140, 160, 261
FatI	CATG	2 cut(s)	220, 694
FauI	CCCGC	1 cut(s)	491
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	6 cut(s)	236, 322, 552, 555, 642, 660
FokI	GGATG	2 cut(s)	317, 323
FriOI	GRGCYC	1 cut(s)	860
Fsp4HI	GCNGC	6 cut(s)	236, 322, 552, 555, 642, 660
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	6 cut(s)	236, 322, 552, 555, 642, 660
GsaI	CCCAGC	2 cut(s)	181, 735
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	4 cut(s)	108, 227, 299, 906
HapII	CCGG	2 cut(s)	130, 212
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	224, 698
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	3 cut(s)	362, 624, 835
HpaII	CCGG	2 cut(s)	130, 212
HphI	GGTGA	2 cut(s)	172, 497
Hpy166II	GTNNAC	3 cut(s)	9, 37, 934
Hpy188I	TCNGA	4 cut(s)	265, 331, 361, 367
Hpy188III	TCNNGA	2 cut(s)	14, 767
Hpy8I	GTNNAC	3 cut(s)	9, 37, 934
HpyAV	CCTTC	5 cut(s)	11, 66, 200, 677, 847
HpyCH4III	ACNGT	2 cut(s)	136, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 504, 551, 610
HpyF3I	CTNAG	2 cut(s)	454, 900
Hsp92II	CATG	2 cut(s)	224, 698
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	67, 217, 480, 607, 670
LmnI	GCTCC	3 cut(s)	403, 601, 698
Lsp1109I	GCAGC	5 cut(s)	247, 538, 541, 628, 646
LweI	GCATC	4 cut(s)	88, 222, 345, 802
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	5 cut(s)	69, 219, 482, 609, 672
MboI	GATC	5 cut(s)	67, 217, 480, 607, 670
MboII	GAAGA	5 cut(s)	358, 380, 383, 583, 830
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	2 cut(s)	260, 860
MlsI	TGGCCA	2 cut(s)	108, 227
MluCI	AATT	3 cut(s)	93, 706, 738
MluNI	TGGCCA	2 cut(s)	108, 227
MlyI	GAGTC	3 cut(s)	371, 618, 829
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	7 cut(s)	24, 151, 265, 367, 378, 457, 775
Mox20I	TGGCCA	2 cut(s)	108, 227
MscI	TGGCCA	2 cut(s)	108, 227
MseI	TTAA	2 cut(s)	96, 801
MslI	CAYNNNNRTG	1 cut(s)	408
Msp20I	TGGCCA	2 cut(s)	108, 227
MspI	CCGG	2 cut(s)	130, 212
MspR9I	CCNGG	3 cut(s)	46, 212, 244
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	2 cut(s)	46, 244
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	50, 504, 551, 610
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	5 cut(s)	67, 217, 480, 607, 670
NlaIII	CATG	2 cut(s)	224, 698
NlaIV	GGNNCC	4 cut(s)	69, 128, 176, 886
NspV	TTCGAA	2 cut(s)	142, 283
PctI	GAATGC	1 cut(s)	55
PkrI	GCNGC	6 cut(s)	237, 323, 553, 556, 643, 661
PleI	GAGTC	3 cut(s)	370, 618, 829
PpsI	GAGTC	3 cut(s)	370, 618, 829
Psp6I	CCWGG	2 cut(s)	44, 242
PspFI	CCCAGC	2 cut(s)	177, 731
PspGI	CCWGG	2 cut(s)	44, 242
PspN4I	GGNNCC	4 cut(s)	69, 128, 176, 886
PspPI	GGNCC	3 cut(s)	127, 174, 904
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	10, 436
RsaNI	GTAC	2 cut(s)	9, 435
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	96, 801
SatI	GCNGC	6 cut(s)	236, 322, 552, 555, 642, 660
Sau3AI	GATC	5 cut(s)	67, 217, 480, 607, 670
Sau96I	GGNCC	3 cut(s)	127, 174, 904
SchI	GAGTC	3 cut(s)	371, 618, 829
ScrFI	CCNGG	3 cut(s)	46, 212, 244
SduI	GDGCHC	2 cut(s)	260, 860
SfaNI	GCATC	4 cut(s)	88, 222, 345, 802
SfuI	TTCGAA	2 cut(s)	142, 283
SinI	GGWCC	2 cut(s)	127, 174
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	93, 706, 738
SsiI	CCGC	5 cut(s)	321, 401, 498, 570, 611
StyD4I	CCNGG	3 cut(s)	44, 210, 242
StyI	CCWWGG	2 cut(s)	300, 888
TaaI	ACNGT	2 cut(s)	136, 526
TaqI	TCGA	3 cut(s)	142, 283, 768
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	93, 706, 738
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	96, 801
Tru9I	TTAA	2 cut(s)	96, 801
TscAI	CASTG	4 cut(s)	127, 529, 565, 588
TseI	GCWGC	5 cut(s)	235, 551, 554, 641, 659
TspDTI	ATGAA	2 cut(s)	830, 834
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	4 cut(s)	127, 529, 565, 588
VpaK11BI	GGWCC	2 cut(s)	127, 174
XapI	RAATTY	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.