Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013658.1

Orthogroup ID

OG0017791

Physical Location & Seq

Genomic Coordinates Reverse (-)

9118 .. 10689

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013658.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgaagtctgcttgtaggaaagctgtgttgttttcactcctcttcgtggttctatttgggtatgctacagccgagtctgaagaagaggtttcacggaagttgatatctgctccgcacaagaatgtgagaactaatgttattgatggcactggtaatgagaataccttaggttttgaggatataaataatgggatcggtgagacaaagggcgggaacagcaaagtctcaatctccactgttgcattatttacgctggcaatggctgctgccactggttttagtggtttaggtgcagttccattcttctttgtggagcttgatccgcaatgggctggactctgcaatggaatggctgcgggtgtgatgttggctgcaagctttgatcttatacaggaagggcaaggtcatggagcagggaattgggtggtctttgggattttagctgggggaatttttattttgctttgcaagaagggctctggtgttggggtttcctttgctggttccaagggtttctgtcagggccttttggtaactttggctattgctgttcacaatataccagaaggattagctaatccccagatggttcttaggtcatctggaattagggatgacaaaaatctccagcggggcggagctccactggatatctgccccatgatagggggagaattcggggacaaatggggaatggggatggggatcctcaatctccgctatctaaaatcggggatggtattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

248

Amino Acids

25.86

Weight (kDa)

6.82

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017791)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459981 RchiOBHm_Chr3g0460031
rosa_laevigata	RLG00000025049
rosa_multiflora	Rmu_sc0000240.1_g000058 Rmu_sc0000240.1_g000059 Rmu_sc0013658.1_g000002 Rmu_sc0016534.1_g000009
rosa_rugosa	Rorug03G0039000
rosa_samantha	Rh3BG100500 Rh3CG102300 Rh3CG102500 Rh3DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	113, 210, 323, 356, 631, 636, 718
AclWI	GGATC	4 cut(s)	200, 314, 700, 713
AcsI	RAATTY	2 cut(s)	450, 674
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	46, 665, 666
AluBI	AGCT	6 cut(s)	23, 316, 378, 443, 575, 641
AluI	AGCT	6 cut(s)	23, 316, 378, 443, 575, 641
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	194, 229
AlwI	GGATC	4 cut(s)	200, 314, 700, 713
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	4 cut(s)	263, 266, 353, 371
ApoI	RAATTY	2 cut(s)	450, 674
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	705
BanII	GRGCYC	2 cut(s)	479, 643
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	4 cut(s)	250, 253, 340, 358
BccI	CCATC	4 cut(s)	137, 580, 694, 730
BcoDI	GTCTC	2 cut(s)	194, 229
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	4 cut(s)	264, 267, 354, 372
BlsI	GCNGC	4 cut(s)	265, 268, 355, 373
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	505, 707
BpmI	CTGGAG	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 665, 666
Bse1I	ACTGG	3 cut(s)	154, 277, 651
Bse21I	CCTNAGG	1 cut(s)	166
Bse3DI	GCAATG	3 cut(s)	264, 332, 349
Bse8I	GATNNNNATC	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	3 cut(s)	619, 705, 741
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	3 cut(s)	46, 665, 666
BseMI	GCAATG	3 cut(s)	264, 332, 349
BseNI	ACTGG	3 cut(s)	154, 277, 651
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	4 cut(s)	250, 253, 340, 358
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	3 cut(s)	46, 665, 666
BsmAI	GTCTC	2 cut(s)	194, 229
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	479, 643
Bsp143I	GATC	4 cut(s)	192, 319, 382, 705
BspACI	CCGC	7 cut(s)	113, 210, 323, 356, 631, 636, 718
BspANI	GGCC	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	505, 707
BspPI	GGATC	4 cut(s)	200, 314, 700, 713
BsrDI	GCAATG	3 cut(s)	264, 332, 349
BsrI	ACTGG	3 cut(s)	154, 277, 651
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	4 cut(s)	192, 319, 382, 705
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	47, 78
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	255, 376
BstDEI	CTNAG	2 cut(s)	166, 593
BstF5I	GGATG	3 cut(s)	619, 705, 741
BstKTI	GATC	4 cut(s)	195, 322, 385, 708
BstMAI	GTCTC	2 cut(s)	194, 229
BstMBI	GATC	4 cut(s)	192, 319, 382, 705
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 263, 322, 474
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	4 cut(s)	250, 253, 340, 358
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
Bsu36I	CCTNAGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	619, 705, 741
BtsIMutI	CAGTG	4 cut(s)	147, 234, 270, 644
Cac8I	GCNNGC	2 cut(s)	255, 376
Cfr13I	GGNCC	1 cut(s)	523
CviAII	CATG	2 cut(s)	407, 661
DdeI	CTNAG	2 cut(s)	166, 593
DpnI	GATC	4 cut(s)	194, 321, 384, 707
DpnII	GATC	4 cut(s)	192, 319, 382, 705
Eam1104I	CTCTTC	2 cut(s)	47, 78
EarI	CTCTTC	2 cut(s)	47, 78
EciI	GGCGGA	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	2 cut(s)	479, 643
Eco32I	GATATC	2 cut(s)	105, 652
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	674
EcoRV	GATATC	2 cut(s)	105, 652
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	479, 643
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	2 cut(s)	410, 664
FaiI	YATR	7 cut(s)	63, 182, 389, 408, 560, 662, 745
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	2 cut(s)	406, 660
FauI	CCCGC	3 cut(s)	203, 349, 624
Fnu4HI	GCNGC	4 cut(s)	264, 267, 354, 372
FokI	GGATG	2 cut(s)	626, 712
FriOI	GRGCYC	2 cut(s)	479, 643
Fsp4HI	GCNGC	4 cut(s)	264, 267, 354, 372
GluI	GCNGC	4 cut(s)	264, 267, 354, 372
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	410, 664
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	2 cut(s)	74, 336
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	603
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	389, 466, 560
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	5 cut(s)	242, 293, 342, 374, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 263, 322, 474
HpyF3I	CTNAG	2 cut(s)	166, 593
Hsp92II	CATG	2 cut(s)	410, 664
Kzo9I	GATC	4 cut(s)	192, 319, 382, 705
LmnI	GCTCC	5 cut(s)	115, 313, 410, 638, 646
Lsp1109I	GCAGC	4 cut(s)	250, 253, 340, 358
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	4 cut(s)	194, 321, 384, 707
MboI	GATC	4 cut(s)	192, 319, 382, 705
MboII	GAAGA	4 cut(s)	34, 92, 95, 295
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	2 cut(s)	479, 643
MluCI	AATT	4 cut(s)	418, 450, 606, 674
MlyI	GAGTC	2 cut(s)	83, 330
MnlI	CCTC	4 cut(s)	50, 79, 169, 719
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	631
MwoI	GCNNNNNNNGC	4 cut(s)	216, 263, 322, 474
NdeII	GATC	4 cut(s)	192, 319, 382, 705
NlaIII	CATG	2 cut(s)	410, 664
NlaIV	GGNNCC	2 cut(s)	505, 707
NmeAIII	GCCGAG	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	265, 268, 355, 373
PleI	GAGTC	2 cut(s)	82, 330
PpsI	GAGTC	2 cut(s)	82, 330
Psp124BI	GAGCTC	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	505, 707
PspPI	GGNCC	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	643
SatI	GCNGC	4 cut(s)	264, 267, 354, 372
Sau3AI	GATC	4 cut(s)	192, 319, 382, 705
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	83, 330
SduI	GDGCHC	2 cut(s)	479, 643
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	418, 450, 606, 674
SsiI	CCGC	7 cut(s)	113, 210, 323, 356, 631, 636, 718
SstI	GAGCTC	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	4 cut(s)	418, 450, 606, 674
TscAI	CASTG	4 cut(s)	154, 241, 277, 651
TseI	GCWGC	4 cut(s)	263, 266, 353, 371
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	4 cut(s)	154, 241, 277, 651
XapI	RAATTY	2 cut(s)	450, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.