Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0017791

Physical Location & Seq

Genomic Coordinates Forward (+)

3040114 .. 3042324

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0039000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTCGAGGTGGTGACACTTGGCATTGGAAACACAAACATCTTGACTCGGTCACCGGACTCAACGAGAACGAAATTCTCACATCGGTTTGATTCACATCGGTATGATGATTCAAGATTGGCCTCAATTCCTTTAACCTTTCAAGATCTTCAAAAAGAGCAGATTGCAGGGTTGAAGTCAAGGCCTGTAGCAGCAGCAACACCAGCAATAGCTCCTTCTAGGCAGAAGTCGAGCCCCAGAAATTCAAAGATTCAGAGGAACAGTCGTATGTCTTCACCTATTGGTCGAAATCCAGTTGCCAACAAGCAGAGATCCTTGTCTCGTTTGCCGGAGAGCAACGACCTTAGTGATGTGTTTAAGGAAGTTCAGACTGATACGAAGAGATTTTCAACACCACACCCTAGGACAATACAATCAGATAAGGGAATTATGCGAAAGTTGTTCAGGATGGGTTCACAATCTAAGGGATCACATCTGTCGCATTCGTCTTCGAATACTAGCCCCCTCAGGCACTTGGCTTCAATGAAAGTGCATGGGAGAGTTAATGAGGTGGATGCTGCAGATGAATTTATTGTTGATTTGTCAAAGCTGTTTCTTGGTCATAAGTTTGCTCATGGAGCTCATAGCACGCTTTATCATGGGATTTACAATGAGGAAGCTGTTGCAGTTAAGATCGTCAGGGTACCGGAAGATGACGATGGAGGAGTCTTGGCAGCTCGATTGGAGAAACAATTTAACAGAGAGAAAATAATTGCCATTGCCTTGGACATTGCTCGGGGAATGGAATACATCCACTCGCAAGGAGTCATTCACCGGGACCTTAAGCCTGAGAATGTTCTTATCTATAAAGACTTTAGGCTGAAAATTGTTGATTTTGGCATAGCATGTGAGGAGGCATATTGTGATTCGTTGGCTGATGAGCCTGGAACTTACCGTTGGATGGCCCCCGAAATGATTAAGCGTAAATCCTTTGGGCGAAAGCCGGAACAATCCCTTATATATGAGGAGATGAATCCCATCCAAGTTGCTTTTGCAGTTGTGAATAAGAATTTGAGGCCACTTATCCCAAAGGACTGCCGACCAGCTATGCGAGCCTTGATCGAGCAATGCTGGTCTTTGCAGCCGGATAAAAGGCCTGAGTTTTGGCAGGTTGTAAAGGTGTTGGAACAATTTGAGTCTTCCCTTGCTCGAGATGGAACATTGAACGCTTGTACAGAATTTGACTTGCCAAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

412

Amino Acids

46.59

Weight (kDa)

9.36

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	233 - 327	1.6e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	241 - 326	1.2e-18	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	328 - 388	4.3e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017791)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459981 RchiOBHm_Chr3g0460031
rosa_laevigata	RLG00000025049
rosa_multiflora	Rmu_sc0000240.1_g000058 Rmu_sc0000240.1_g000059 Rmu_sc0013658.1_g000002 Rmu_sc0016534.1_g000009
rosa_rugosa	Rorug03G0039000
rosa_samantha	Rh3BG100500 Rh3CG102300 Rh3CG102500 Rh3DG102000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1138
Acc65I	GGTACC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	682
AclWI	GGATC	2 cut(s)	306, 475
AcsI	RAATTY	5 cut(s)	74, 241, 566, 1048, 1217
AfaI	GTAC	2 cut(s)	684, 1213
AfiI	CCNNNNNNNGG	1 cut(s)	940
AflII	CTTAAG	1 cut(s)	821
AgsI	TTSAA	8 cut(s)	114, 143, 152, 175, 246, 390, 522, 1204
AjnI	CCWGG	1 cut(s)	922
AjuI	GAANNNNNNNTTGG	2 cut(s)	919, 951
AluBI	AGCT	6 cut(s)	212, 589, 620, 659, 716, 1085
AluI	AGCT	6 cut(s)	212, 589, 620, 659, 716, 1085
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	306, 475
Ama87I	CYCGRG	2 cut(s)	774, 1188
AoxI	GGCC	5 cut(s)	120, 182, 942, 1055, 1133
ApeKI	GCWGC	5 cut(s)	191, 194, 557, 713, 1120
ApoI	RAATTY	5 cut(s)	74, 241, 566, 1048, 1217
Asp718I	GGTACC	1 cut(s)	682
AspA2I	CCTAGG	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	817, 943
AsuC2I	CCSGG	1 cut(s)	815
AsuHPI	GGTGA	4 cut(s)	25, 45, 267, 803
AsuII	TTCGAA	1 cut(s)	491
AvaI	CYCGRG	2 cut(s)	774, 1188
AvaII	GGWCC	1 cut(s)	817
AvrII	CCTAGG	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	236, 622
BbsI	GAAGAC	3 cut(s)	264, 480, 1170
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	5 cut(s)	203, 206, 544, 725, 1132
BccI	CCATC	5 cut(s)	442, 692, 934, 1025, 1187
BciT130I	CCWGG	1 cut(s)	924
BcnI	CCSGG	1 cut(s)	815
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	3 cut(s)	219, 402, 498
BfmI	CTRYAG	2 cut(s)	186, 558
BfrI	CTTAAG	1 cut(s)	821
BfuAI	ACCTGC	1 cut(s)	1138
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	5 cut(s)	192, 195, 558, 714, 1121
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	5 cut(s)	193, 196, 559, 715, 1122
Bme1390I	CCNGG	2 cut(s)	815, 924
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	2 cut(s)	774, 1188
BmgT120I	GGNCC	2 cut(s)	817, 943
BmiI	GGNNCC	3 cut(s)	684, 818, 945
BmrFI	CCNGG	2 cut(s)	815, 924
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	3 cut(s)	264, 480, 1170
Bpu14I	TTCGAA	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	401, 762
BsaWI	WCCGGW	2 cut(s)	55, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	940
Bse1I	ACTGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	506
Bse3DI	GCAATG	3 cut(s)	756, 768, 1112
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	2 cut(s)	401, 762
BseGI	GGATG	5 cut(s)	453, 559, 789, 945, 1017
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	940
BseMI	GCAATG	3 cut(s)	756, 768, 1112
BseMII	CTCAG	3 cut(s)	520, 819, 1128
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	3 cut(s)	717, 905, 1019
BseXI	GCAGC	5 cut(s)	203, 206, 544, 725, 1132
BshFI	GGCC	5 cut(s)	122, 184, 944, 1057, 1135
BshNI	GGYRCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	2 cut(s)	774, 1188
BsiSI	CCGG	6 cut(s)	56, 329, 686, 814, 983, 1124
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	1 cut(s)	940
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	830
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	5 cut(s)	122, 184, 944, 1057, 1135
BsoBI	CYCGRG	2 cut(s)	774, 1188
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	236, 622
Bsp1407I	TGTACA	1 cut(s)	1211
Bsp143I	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
BspANI	GGCC	5 cut(s)	122, 184, 944, 1057, 1135
BspCNI	CTCAG	3 cut(s)	519, 820, 1129
BspLI	GGNNCC	3 cut(s)	684, 818, 945
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	1138
BspPI	GGATC	2 cut(s)	306, 475
BspT104I	TTCGAA	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	682
BspTI	CTTAAG	1 cut(s)	821
BsrDI	GCAATG	3 cut(s)	756, 768, 1112
BsrGI	TGTACA	1 cut(s)	1211
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	401, 762
BssMI	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
BssT1I	CCWWGG	2 cut(s)	401, 762
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	2 cut(s)	263, 935
Bst6I	CTCTTC	1 cut(s)	374
BstAFI	CTTAAG	1 cut(s)	821
BstAUI	TGTACA	1 cut(s)	1211
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	629, 1092
BstDEI	CTNAG	5 cut(s)	344, 462, 506, 828, 1137
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	5 cut(s)	453, 559, 789, 945, 1017
BstKTI	GATC	6 cut(s)	148, 314, 470, 675, 1101, 1235
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 617, 1091
BstNI	CCWGG	1 cut(s)	924
BstNSI	RCATGY	1 cut(s)	888
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	813, 922
BstSFI	CTRYAG	2 cut(s)	186, 558
BstV1I	GCAGC	5 cut(s)	203, 206, 544, 725, 1132
BstV2I	GAAGAC	3 cut(s)	264, 480, 1170
BstX2I	RGATCY	2 cut(s)	145, 311
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	2 cut(s)	145, 311
Bsu36I	CCTNAGG	1 cut(s)	506
BsuRI	GGCC	5 cut(s)	122, 184, 944, 1057, 1135
BtsCI	GGATG	5 cut(s)	453, 559, 789, 945, 1017
BveI	ACCTGC	1 cut(s)	1138
Cac8I	GCNNGC	2 cut(s)	629, 1092
Cfr13I	GGNCC	2 cut(s)	817, 943
Csp6I	GTAC	2 cut(s)	683, 1212
CviAII	CATG	4 cut(s)	533, 614, 638, 885
CviQI	GTAC	2 cut(s)	683, 1212
DdeI	CTNAG	5 cut(s)	344, 462, 506, 828, 1137
DpnI	GATC	6 cut(s)	147, 313, 469, 674, 1100, 1234
DpnII	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Ecl136II	GAGCTC	1 cut(s)	620
Eco130I	CCWWGG	2 cut(s)	401, 762
Eco147I	AGGCCT	2 cut(s)	184, 1135
Eco24I	GRGCYC	2 cut(s)	236, 622
Eco47I	GGWCC	1 cut(s)	817
Eco53kI	GAGCTC	1 cut(s)	620
Eco81I	CCTNAGG	1 cut(s)	506
Eco88I	CYCGRG	2 cut(s)	774, 1188
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	817
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	922
EcoT14I	CCWWGG	2 cut(s)	401, 762
EcoT38I	GRGCYC	2 cut(s)	236, 622
ErhI	CCWWGG	2 cut(s)	401, 762
FaeI	CATG	4 cut(s)	536, 617, 641, 888
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	4 cut(s)	532, 613, 637, 884
Fnu4HI	GCNGC	5 cut(s)	192, 195, 558, 714, 1121
FokI	GGATG	5 cut(s)	460, 566, 776, 952, 1004
FriOI	GRGCYC	2 cut(s)	236, 622
Fsp4HI	GCNGC	5 cut(s)	192, 195, 558, 714, 1121
FspBI	CTAG	3 cut(s)	219, 402, 498
GluI	GCNGC	5 cut(s)	192, 195, 558, 714, 1121
HaeIII	GGCC	5 cut(s)	122, 184, 944, 1057, 1135
HapII	CCGG	6 cut(s)	56, 329, 686, 814, 983, 1124
Hin1II	CATG	4 cut(s)	536, 617, 641, 888
HpaII	CCGG	6 cut(s)	56, 329, 686, 814, 983, 1124
HphI	GGTGA	4 cut(s)	25, 45, 267, 803
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	3 cut(s)	255, 369, 418
Hpy188III	TCNNGA	5 cut(s)	43, 114, 143, 445, 1190
Hpy8I	GTNNAC	1 cut(s)	455
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	263, 935
HpyCH4V	TGCA	6 cut(s)	167, 532, 560, 665, 1034, 1120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 617, 1091
HpyF3I	CTNAG	5 cut(s)	344, 462, 506, 828, 1137
Hsp92II	CATG	4 cut(s)	536, 617, 641, 888
KpnI	GGTACC	1 cut(s)	686
Kzo9I	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
LmnI	GCTCC	2 cut(s)	217, 617
Lsp1109I	GCAGC	5 cut(s)	203, 206, 544, 725, 1132
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	3 cut(s)	219, 402, 498
MaeIII	GTNAC	2 cut(s)	13, 51
MalI	GATC	6 cut(s)	147, 313, 469, 674, 1100, 1234
MboI	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
MboII	GAAGA	6 cut(s)	140, 264, 391, 480, 701, 1170
MflI	RGATCY	2 cut(s)	145, 311
MhlI	GDGCHC	2 cut(s)	236, 622
MlyI	GAGTC	5 cut(s)	40, 53, 714, 813, 1184
MmeI	TCCRAC	2 cut(s)	917, 1143
MseI	TTAA	7 cut(s)	134, 357, 543, 669, 735, 822, 957
MslI	CAYNNNNRTG	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	6 cut(s)	56, 329, 686, 814, 983, 1124
MspR9I	CCNGG	2 cut(s)	815, 924
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	3 cut(s)	203, 617, 1091
NciI	CCSGG	1 cut(s)	815
NdeII	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
NlaIII	CATG	4 cut(s)	536, 617, 641, 888
NlaIV	GGNNCC	3 cut(s)	684, 818, 945
NmuCI	GTSAC	2 cut(s)	13, 51
NspI	RCATGY	1 cut(s)	888
NspV	TTCGAA	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	1188
PceI	AGGCCT	2 cut(s)	184, 1135
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	5 cut(s)	92, 110, 250, 905, 1012
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	5 cut(s)	193, 196, 559, 715, 1122
PleI	GAGTC	5 cut(s)	40, 53, 713, 812, 1183
PpsI	GAGTC	5 cut(s)	40, 53, 713, 812, 1183
PpuMI	RGGWCCY	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	922
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	3 cut(s)	684, 818, 945
PspPI	GGNCC	2 cut(s)	817, 943
PspPPI	RGGWCCY	1 cut(s)	817
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	145, 311
PsyI	GACNNNGTC	1 cut(s)	49
RsaI	GTAC	2 cut(s)	684, 1213
RsaNI	GTAC	2 cut(s)	683, 1212
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	622
SaqAI	TTAA	7 cut(s)	134, 357, 543, 669, 735, 822, 957
SatI	GCNGC	5 cut(s)	192, 195, 558, 714, 1121
Sau3AI	GATC	6 cut(s)	145, 311, 467, 672, 1098, 1232
Sau96I	GGNCC	2 cut(s)	817, 943
SchI	GAGTC	5 cut(s)	40, 53, 714, 813, 1184
ScrFI	CCNGG	2 cut(s)	815, 924
SduI	GDGCHC	2 cut(s)	236, 622
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	2 cut(s)	186, 558
Sfr274I	CTCGAG	1 cut(s)	1188
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	1188
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	821, 1188
SmoI	CTYRAG	2 cut(s)	821, 1188
SseBI	AGGCCT	2 cut(s)	184, 1135
SspMI	CTAG	3 cut(s)	219, 402, 498
SstI	GAGCTC	1 cut(s)	622
StuI	AGGCCT	2 cut(s)	184, 1135
StyD4I	CCNGG	2 cut(s)	813, 922
StyI	CCWWGG	2 cut(s)	401, 762
TaaI	ACNGT	2 cut(s)	263, 935
TaqI	TCGA	7 cut(s)	6, 230, 286, 491, 718, 1101, 1189
TaqII	GACCGA	1 cut(s)	39
TatI	WGTACW	1 cut(s)	1211
TfiI	GAWTC	5 cut(s)	92, 110, 250, 905, 1012
Tru1I	TTAA	7 cut(s)	134, 357, 543, 669, 735, 822, 957
Tru9I	TTAA	7 cut(s)	134, 357, 543, 669, 735, 822, 957
TseFI	GTSAC	2 cut(s)	13, 51
TseI	GCWGC	5 cut(s)	191, 194, 557, 713, 1120
Tsp45I	GTSAC	2 cut(s)	13, 51
TspDTI	ATGAA	3 cut(s)	539, 579, 1025
Tth111I	GACNNNGTC	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	817
XapI	RAATTY	5 cut(s)	74, 241, 566, 1048, 1217
XceI	RCATGY	1 cut(s)	888
XhoI	CTCGAG	1 cut(s)	1188
XmaJI	CCTAGG	1 cut(s)	401
XspI	CTAG	3 cut(s)	219, 402, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.