Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Reverse (-)

16711922 .. 16713254

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATTATTAAGCTTGCATTTGTAGCTATGGAGGAGCTAATCCGAATGGCTCAAATTGGCGAGCCTTTGTGGATGAATAGCATTGATGGATCAACCACTGTGCTCAATGAGGATGAGTACATTCGAACATGTCCTCGTGGAATTGTGCCGAAACAACCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTGCTGTTGTCATTATGAACCGCAATAAACTTGTTGAGATTCTCATGGATGTGAATCAATGGTCAACTGGATTTTCGGCGATTGTATCAAGAGCTAAGACTCTGGATGTGCTATCAACTGATGTAGCCGGAAACTACAATGGAGCCTTGCAAGTGATAACAGCAGAATTTCAAGTACCATCTCCACTGGTTCCAACTGGTGAGAGTTATTTTGTGAGGTACTGTAAGCAGCATGCCGATGGCACTTGGGCAGTGGTTGATATCTCCTTGGAAAATCAACGCGGATATACATTTGCTTTGAAATCATGTTTAAGAAGACCTTCTGGTTGTCTCATCCAAGAAATGCCAAATGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

181

Amino Acids

20.09

Weight (kDa)

5.48

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	6 - 180	1.2e-29	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	181, 468
AciI	CCGC	3 cut(s)	181, 208, 468
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	3 cut(s)	119, 363, 407
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	166, 359, 487
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	13, 26, 37, 176, 281
AluI	AGCT	5 cut(s)	13, 26, 37, 176, 281
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	124
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	80, 373, 419
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	521
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	331, 378
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	508
Bpu14I	TTCGAA	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	453
Bse1I	ACTGG	3 cut(s)	259, 378, 388
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	5 cut(s)	78, 118, 241, 298, 519
BseJI	GATNNNNATC	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	259, 378, 388
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	181, 468
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	181, 208, 468
BspFNI	CGCG	2 cut(s)	181, 468
BspLI	GGNNCC	2 cut(s)	331, 378
BspPI	GGATC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	259, 378, 388
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	100, 410
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	15, 62, 420
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	5 cut(s)	78, 118, 241, 298, 519
BstFNI	CGCG	2 cut(s)	181, 468
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	2 cut(s)	132, 422
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	2 cut(s)	181, 468
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	508
BtsCI	GGATG	5 cut(s)	78, 118, 241, 298, 519
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	96, 371, 444
Cac8I	GCNNGC	3 cut(s)	15, 62, 420
Csp6I	GTAC	3 cut(s)	118, 362, 406
CviAII	CATG	4 cut(s)	129, 232, 419, 492
CviJI	RGCY	9 cut(s)	13, 26, 37, 50, 64, 176, 281, 314, 332
CviKI_1	RGCY	9 cut(s)	13, 26, 37, 50, 64, 176, 281, 314, 332
CviQI	GTAC	3 cut(s)	118, 362, 406
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	132, 235, 422, 495
FaiI	YATR	7 cut(s)	29, 130, 203, 233, 420, 474, 493
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FatI	CATG	4 cut(s)	128, 231, 418, 491
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	5 cut(s)	85, 125, 248, 305, 506
Fsp4HI	GCNGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	416
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	4 cut(s)	132, 235, 422, 495
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	2 cut(s)	11, 174
HinfI	GANTC	4 cut(s)	162, 226, 241, 286
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	2 cut(s)	276, 290
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	516
HpyCH4III	ACNGT	2 cut(s)	100, 410
HpyCH4V	TGCA	2 cut(s)	17, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	132, 235, 422, 495
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	34, 329
LpnPI	CCDG	8 cut(s)	144, 171, 240, 275, 328, 359, 369, 495
Lsp1109I	GCAGC	1 cut(s)	427
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	54, 141, 353
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	4 cut(s)	25, 103, 144, 396
MroXI	GAANNNNTTC	1 cut(s)	505
MseI	TTAA	2 cut(s)	9, 497
MslI	CAYNNNNRTG	2 cut(s)	236, 423
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	181, 468
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	4 cut(s)	132, 235, 422, 495
NlaIV	GGNNCC	2 cut(s)	331, 378
NspI	RCATGY	2 cut(s)	132, 422
NspV	TTCGAA	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	422
PciI	ACATGT	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	162, 226, 241
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PscI	ACATGT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	331, 378
RsaI	GTAC	3 cut(s)	119, 363, 407
RsaNI	GTAC	3 cut(s)	118, 362, 406
RseI	CAYNNNNRTG	2 cut(s)	236, 423
SaqAI	TTAA	2 cut(s)	9, 497
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	15, 28, 39, 160, 178, 283, 407, 508
SfuI	TTCGAA	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	236, 423
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	3 cut(s)	54, 141, 353
SsiI	CCGC	3 cut(s)	181, 208, 468
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	100, 410
TaqI	TCGA	1 cut(s)	124
TasI	AATT	3 cut(s)	54, 141, 353
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	162, 226, 241
Tru1I	TTAA	2 cut(s)	9, 497
Tru9I	TTAA	2 cut(s)	9, 497
TscAI	CASTG	3 cut(s)	103, 378, 444
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	89, 218
TspRI	CASTG	3 cut(s)	103, 378, 444
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	2 cut(s)	132, 422
XmnI	GAANNNNTTC	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.