Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Forward (+)

33485919 .. 33492882

Gene Structure 6964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGTTCCTTGCTGTTTGCCGGATGGGGCATGCAGCTGCGCGGAGGGATTGGAGATGGCTGGACGCGGTGGAGACATTGTCAATCAGTGCACCTAATGAGGCAGATAAGCCCATGATTATTGAGCTTGCAGTTGTAGCTATGGTGGAGCTAATCCGAATGGCTCAAATTGGCGAGCCTTTGTGGATGAATAGCATTGATAGATCAACCACCGTGCTCAATAAGGATGAGTACATTCGAACATGTCCTCGTGGAATTGTGCCGAAACAACCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTGCTGTTGTCATTATGAACCGCAATAAGCTTGTTGAGATTCTCATGGATGTAAATCAATGGTCAACTGTATTTTCGGGGATTGTATCAAGAGCTAAGACTCTGGATGTGCTATCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATAACAACAGAATTTCAAGTACCATCTCCACTGGTTCCAACTCGTGAGAGTTATTTTGTGAGGTGCTGTAAGCAGCATGCCGATGGCACTTGGGCAGTGGTTGATATCTCCTTGGAAAATCAACGCGGATATACTTCTGCTTTGAAATCATGTTTAAGAAGACCTTCTGGTTTTCTCATCCAAGAAATGCCAAATGGAAACTCAAAGGCATTTGGGGCAAAAAGATGGGTTGCGACCTTGGACCGCCAATGTGAGCGTCTCGCCAGAGCCTTGGCGACAAAAAACCCTACCGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

252

Amino Acids

27.95

Weight (kDa)

9.15

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	45 - 221	2.6e-32	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	43, 68, 295, 582
AciI	CCGC	6 cut(s)	43, 68, 295, 322, 582, 700
AcsI	RAATTY	1 cut(s)	467
AfaI	GTAC	2 cut(s)	233, 477
AflIII	ACRYGT	1 cut(s)	242
AgeI	ACCGGT	1 cut(s)	746
AgsI	TTSAA	3 cut(s)	280, 473, 601
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	7 cut(s)	38, 127, 140, 151, 290, 331, 395
AluI	AGCT	7 cut(s)	38, 127, 140, 151, 290, 331, 395
Alw21I	GWGCWC	2 cut(s)	94, 219
Alw26I	GTCTC	2 cut(s)	68, 719
Alw44I	GTGCAC	1 cut(s)	90
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	35, 38, 529
ApoI	RAATTY	1 cut(s)	467
AsiGI	ACCGGT	1 cut(s)	746
Asp700I	GAANNNNTTC	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	697
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	94
BauI	CACGAG	2 cut(s)	249, 498
BbsI	GAAGAC	1 cut(s)	622
Bbv12I	GWGCWC	2 cut(s)	94, 219
BbvI	GCAGC	3 cut(s)	25, 47, 541
BccI	CCATC	5 cut(s)	19, 51, 487, 533, 675
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	68, 719
BisI	GCNGC	3 cut(s)	36, 39, 530
BlsI	GCNGC	3 cut(s)	37, 40, 531
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	2 cut(s)	445, 492
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	622
BpmI	CTGGAG	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	567, 693, 726
BsaWI	WCCGGW	1 cut(s)	746
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	424, 492
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	567, 693, 726
BseGI	GGATG	6 cut(s)	30, 192, 232, 355, 412, 633
BseJI	GATNNNNATC	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	424, 492
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	25, 47, 541
Bsh1236I	CGCG	4 cut(s)	43, 68, 295, 582
BshTI	ACCGGT	1 cut(s)	746
BsiHKAI	GWGCWC	2 cut(s)	94, 219
BsiSI	CCGG	2 cut(s)	22, 747
BsmAI	GTCTC	2 cut(s)	68, 719
BsmBI	CGTCTC	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	94, 219
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	6 cut(s)	43, 68, 295, 322, 582, 700
BspFNI	CGCG	4 cut(s)	43, 68, 295, 582
BspLI	GGNNCC	2 cut(s)	445, 492
BspT104I	TTCGAA	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	2 cut(s)	424, 492
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	3 cut(s)	567, 693, 726
BssMI	GATC	1 cut(s)	203
BssSI	CACGAG	2 cut(s)	249, 498
BssT1I	CCWWGG	3 cut(s)	567, 693, 726
Bst2BI	CACGAG	2 cut(s)	249, 498
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	214, 370
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	33, 129, 176, 534
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	6 cut(s)	30, 192, 232, 355, 412, 633
BstFNI	CGCG	4 cut(s)	43, 68, 295, 582
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	68, 719
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 671
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	3 cut(s)	35, 246, 536
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	94
BstUI	CGCG	4 cut(s)	43, 68, 295, 582
BstV1I	GCAGC	3 cut(s)	25, 47, 541
BstV2I	GAAGAC	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	727
BtsCI	GGATG	6 cut(s)	30, 192, 232, 355, 412, 633
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	94, 485, 558
Cac8I	GCNNGC	4 cut(s)	33, 129, 176, 534
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	697
CseI	GACGC	2 cut(s)	74, 701
Csp6I	GTAC	2 cut(s)	232, 476
CspAI	ACCGGT	1 cut(s)	746
CviAII	CATG	6 cut(s)	32, 115, 243, 346, 533, 606
CviQI	GTAC	2 cut(s)	232, 476
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Eco130I	CCWWGG	3 cut(s)	567, 693, 726
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	567, 693, 726
ErhI	CCWWGG	3 cut(s)	567, 693, 726
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	6 cut(s)	35, 118, 246, 349, 536, 609
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FatI	CATG	6 cut(s)	31, 114, 242, 345, 532, 605
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	36, 39, 530
FokI	GGATG	6 cut(s)	37, 199, 239, 362, 419, 620
Fsp4HI	GCNGC	3 cut(s)	36, 39, 530
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	36, 39, 530
GsuI	CTGGAG	1 cut(s)	441
HapII	CCGG	2 cut(s)	22, 747
HgaI	GACGC	2 cut(s)	74, 701
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	6 cut(s)	35, 118, 246, 349, 536, 609
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	2 cut(s)	288, 329
HinfI	GANTC	3 cut(s)	276, 340, 400
HpaII	CCGG	2 cut(s)	22, 747
Hpy166II	GTNNAC	2 cut(s)	92, 366
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	3 cut(s)	390, 404, 500
Hpy8I	GTNNAC	2 cut(s)	92, 366
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	2 cut(s)	214, 370
HpyCH4V	TGCA	4 cut(s)	35, 92, 131, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 671
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	6 cut(s)	35, 118, 246, 349, 536, 609
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	148, 443
Lsp1109I	GCAGC	3 cut(s)	25, 47, 541
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	94, 219
MluCI	AATT	3 cut(s)	168, 255, 467
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	4 cut(s)	39, 94, 258, 510
MroXI	GAANNNNTTC	1 cut(s)	619
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	22, 747
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	4 cut(s)	43, 68, 295, 582
MwoI	GCNNNNNNNGC	2 cut(s)	137, 671
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	6 cut(s)	35, 118, 246, 349, 536, 609
NlaIV	GGNNCC	2 cut(s)	445, 492
NspI	RCATGY	3 cut(s)	35, 246, 536
NspV	TTCGAA	1 cut(s)	238
PaeI	GCATGC	2 cut(s)	35, 536
PciI	ACATGT	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	276, 340
PflFI	GACNNNGTC	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	746
PkrI	GCNGC	3 cut(s)	37, 40, 531
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	445, 492
PspPI	GGNCC	1 cut(s)	697
PsyI	GACNNNGTC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	233, 477
RsaNI	GTAC	2 cut(s)	232, 476
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	3 cut(s)	36, 39, 530
Sau3AI	GATC	1 cut(s)	203
Sau96I	GGNCC	1 cut(s)	697
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	94, 219
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	537
SphI	GCATGC	2 cut(s)	35, 536
Sse9I	AATT	3 cut(s)	168, 255, 467
SsiI	CCGC	6 cut(s)	43, 68, 295, 322, 582, 700
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	3 cut(s)	567, 693, 726
TaaI	ACNGT	2 cut(s)	214, 370
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	168, 255, 467
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	276, 340
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	3 cut(s)	94, 492, 558
TseI	GCWGC	3 cut(s)	35, 38, 529
TspDTI	ATGAA	2 cut(s)	203, 332
TspRI	CASTG	3 cut(s)	94, 492, 558
Tth111I	GACNNNGTC	1 cut(s)	79
VneI	GTGCAC	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	3 cut(s)	35, 246, 536
XmnI	GAANNNNTTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.