Rmu_sc0002790.1_g000010

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002790.1
Physical Location & Seq
Reverse (-)
36475 .. 39982
3508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002790.1_g000010.1.cds

Sequence Viewer

Length: 1263 bp
atgaatacttcaggagacattatggggtcaatcagtgcacctagtgatgaggcagaaaagcccatgattattgagcttgcatttgtagctatggaggagctaatccgaatggctcaaattggcgagcctttgtggatgaatagcattgatggatcaaccactgtgctcaatgaggatgagtacattcgaacatgtcctcgtggaattgtgccgaagcaacctggattcaaatgtgaagcttcgcgggagagtgctgttgtcattatgaaccgcaataagcttgttgagattctcatggatgtgaatcaatggtcaactggatttttggcgattgtatcaagagctaagactctggatgtgctatcaactggtgtagccggaaactacaatggagccttgcaagtgataacagcagaatttcaagtaccatctccactggttccaactggtgagagttattttgtgaggtactgtaagcagcatgccgatggcacttgggcagtggttgatatctccttggaaaatcaacgcggatatacttctgctttgaaatcatgtttaagaagaccttctggttgtctcatccaagaaatgccaaatggaaactcaaagggacaagatgttttgggggaggtggtgcttcttgtcgttgtgctggcgataatggaggagtggatggtggccaacgactactcgtggcggtggctagagtcttgtaacaggggtggaggtgtggtggctgctgcagcttggagggctgatgatgttcgtgtgatgacccgaaagagtgtggatgatccaggaaggcctcagggcattgtgctcactgcagcaacctcattctggcttcctgttccccgcaaaagggtctttgagttccttcgtgataagaactctcgaaataaggtacgtgaattacatttcaataatgtgggagttaccaaaattagggctgggaattccaaaccgagatcccgaaaccgatctcatccgattcgagctgaaaccgatcgggtcagtatgatgagtcgtttccccggaatcccaatccgaaccgtaccgaaacctctgcaaacggttgctgggattcgtggtgagtcatgggtacgggttgacggaaacggaggggtggtggtgtcgtgcacgtggaagcccgggtggaataagttgccggcgacggagagggcgaggctgaagtcgaggcagggggtcagatccaactccagaaataaagcgaaaaacagctacctgaatcgaaagtga

Protein Analysis

420

Amino Acids

46.66

Weight (kDa)

9.74

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 244, 531
AciI CCGC 5 cut(s) 244, 271, 531, 700, 859
AclWI GGATC 4 cut(s) 160, 791, 966, 1209
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 2 cut(s) 416, 958
AcuI CTGAAG 1 cut(s) 1214
AcvI CACGTG 1 cut(s) 1146
AdeI CACNNNGTG 1 cut(s) 44
AfaI GTAC 6 cut(s) 182, 426, 470, 909, 1059, 1107
AfiI CCNNNNNNNGG 4 cut(s) 843, 864, 865, 948
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 4 cut(s) 229, 422, 550, 925
AjnI CCWGG 2 cut(s) 220, 799
AluBI AGCT 9 cut(s) 76, 89, 100, 239, 280, 344, 749, 1001, 1245
AluI AGCT 9 cut(s) 76, 89, 100, 239, 280, 344, 749, 1001, 1245
Alw21I GWGCWC 4 cut(s) 40, 168, 825, 1145
Alw26I GTCTC 2 cut(s) 9, 584
Alw44I GTGCAC 2 cut(s) 36, 1141
AlwI GGATC 4 cut(s) 160, 791, 966, 1209
Ama87I CYCGRG 1 cut(s) 1154
AoxI GGCC 2 cut(s) 681, 806
ApaLI GTGCAC 2 cut(s) 36, 1141
ApeKI GCWGC 5 cut(s) 478, 740, 743, 746, 830
ApoI RAATTY 2 cut(s) 416, 958
Asp700I GAANNNNTTC 1 cut(s) 568
AsuC2I CCSGG 3 cut(s) 1038, 1155, 1156
AsuHPI GGTGA 2 cut(s) 461, 1106
AsuII TTCGAA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 1154
AxyI CCTNAGG 1 cut(s) 810
BaeGI GKGCMC 2 cut(s) 40, 1145
BalI TGGCCA 1 cut(s) 683
BauI CACGAG 2 cut(s) 198, 694
BbrPI CACGTG 1 cut(s) 1146
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 4 cut(s) 40, 168, 825, 1145
BbvI GCAGC 5 cut(s) 490, 727, 730, 758, 842
BccI CCATC 4 cut(s) 143, 436, 482, 670
BcgI CGANNNNNNTGC 2 cut(s) 1051, 1085
BciT130I CCWGG 2 cut(s) 222, 801
BcnI CCSGG 3 cut(s) 1038, 1155, 1156
BcoDI GTCTC 2 cut(s) 9, 584
BfaI CTAG 2 cut(s) 42, 707
BfmI CTRYAG 2 cut(s) 744, 828
BisI GCNGC 5 cut(s) 479, 741, 744, 747, 831
BlsI GCNGC 5 cut(s) 480, 742, 745, 748, 832
Bme1390I CCNGG 5 cut(s) 222, 801, 1038, 1155, 1156
BmeT110I CYCGRG 1 cut(s) 1154
BmiI GGNNCC 2 cut(s) 394, 441
BmrFI CCNGG 5 cut(s) 222, 801, 1038, 1155, 1156
BpiI GAAGAC 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 1207
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 3 cut(s) 1038, 1155, 1156
BsaAI YACGTR 2 cut(s) 911, 1146
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 516, 1036, 1154
BsaXI ACNNNNNCTCC 4 cut(s) 720, 750, 1116, 1146
Bsc4I CCNNNNNNNGG 4 cut(s) 843, 864, 865, 948
Bse118I RCCGGY 1 cut(s) 1171
Bse1I ACTGG 4 cut(s) 322, 373, 441, 451
Bse21I CCTNAGG 1 cut(s) 810
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 2 cut(s) 222, 801
BseDI CCNNGG 3 cut(s) 516, 1036, 1154
BseGI GGATG 8 cut(s) 141, 181, 304, 361, 582, 681, 799, 988
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 4 cut(s) 843, 864, 865, 948
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 4 cut(s) 322, 373, 441, 451
BseRI GAGGAG 2 cut(s) 110, 683
BseSI GKGCMC 2 cut(s) 40, 1145
BseXI GCAGC 5 cut(s) 490, 727, 730, 758, 842
BseYI CCCAGC 2 cut(s) 953, 1082
Bsh1236I CGCG 2 cut(s) 244, 531
Bsh1285I CGRYCG 1 cut(s) 1012
BshFI GGCC 2 cut(s) 683, 808
BsiEI CGRYCG 1 cut(s) 1012
BsiHKAI GWGCWC 4 cut(s) 40, 168, 825, 1145
BsiHKCI CYCGRG 1 cut(s) 1154
BsiSI CCGG 4 cut(s) 378, 1038, 1155, 1172
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 4 cut(s) 843, 864, 865, 948
BsmAI GTCTC 2 cut(s) 9, 584
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 2 cut(s) 683, 808
BsoBI CYCGRG 1 cut(s) 1154
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 4 cut(s) 40, 168, 825, 1145
Bsp143I GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
BspACI CCGC 5 cut(s) 244, 271, 531, 700, 859
BspANI GGCC 2 cut(s) 683, 808
BspCNI CTCAG 1 cut(s) 823
BspFNI CGCG 2 cut(s) 244, 531
BspLI GGNNCC 2 cut(s) 394, 441
BspMAI CTGCAG 2 cut(s) 748, 832
BspPI GGATC 4 cut(s) 160, 791, 966, 1209
BspT104I TTCGAA 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 1171
BsrI ACTGG 4 cut(s) 322, 373, 441, 451
BssAI RCCGGY 1 cut(s) 1171
BssECI CCNNGG 3 cut(s) 516, 1036, 1154
BssMI GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
BssSI CACGAG 2 cut(s) 198, 694
BssT1I CCWWGG 1 cut(s) 516
Bst2BI CACGAG 2 cut(s) 198, 694
Bst2UI CCWGG 2 cut(s) 222, 801
Bst4CI ACNGT 4 cut(s) 163, 473, 1057, 1078
BstBAI YACGTR 2 cut(s) 911, 1146
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 5 cut(s) 78, 125, 483, 657, 1173
BstDEI CTNAG 2 cut(s) 345, 810
BstF5I GGATG 8 cut(s) 141, 181, 304, 361, 582, 681, 799, 988
BstFNI CGCG 2 cut(s) 244, 531
BstKTI GATC 6 cut(s) 155, 799, 974, 986, 1012, 1217
BstMAI GTCTC 2 cut(s) 9, 584
BstMBI GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
BstMCI CGRYCG 1 cut(s) 1012
BstMWI GCNNNNNNNGC 3 cut(s) 86, 746, 755
BstNI CCWGG 2 cut(s) 222, 801
BstNSI RCATGY 2 cut(s) 195, 485
BstSCI CCNGG 5 cut(s) 220, 799, 1036, 1153, 1154
BstSFI CTRYAG 2 cut(s) 744, 828
BstSLI GKGCMC 2 cut(s) 40, 1145
BstUI CGCG 2 cut(s) 244, 531
BstV1I GCAGC 5 cut(s) 490, 727, 730, 758, 842
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 2 cut(s) 971, 1214
BstYI RGATCY 2 cut(s) 971, 1214
Bsu36I CCTNAGG 1 cut(s) 810
BsuRI GGCC 2 cut(s) 683, 808
BtsCI GGATG 8 cut(s) 141, 181, 304, 361, 582, 681, 799, 988
BtsI GCAGTG 2 cut(s) 507, 825
BtsIMutI CAGTG 5 cut(s) 40, 159, 434, 507, 825
Cac8I GCNNGC 5 cut(s) 78, 125, 483, 657, 1173
Cfr10I RCCGGY 1 cut(s) 1171
Cfr9I CCCGGG 1 cut(s) 1154
Csp6I GTAC 6 cut(s) 181, 425, 469, 908, 1058, 1106
CviAII CATG 6 cut(s) 64, 192, 295, 482, 555, 1101
CviQI GTAC 6 cut(s) 181, 425, 469, 908, 1058, 1106
DdeI CTNAG 2 cut(s) 345, 810
DpnI GATC 6 cut(s) 154, 798, 973, 985, 1011, 1216
DpnII GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
DraIII CACNNNGTG 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 516
Eco147I AGGCCT 1 cut(s) 808
Eco32I GATATC 1 cut(s) 511
Eco57I CTGAAG 1 cut(s) 1214
Eco72I CACGTG 1 cut(s) 1146
Eco81I CCTNAGG 1 cut(s) 810
Eco88I CYCGRG 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 2 cut(s) 220, 799
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 6 cut(s) 67, 195, 298, 485, 558, 1104
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 1 cut(s) 627
FatI CATG 6 cut(s) 63, 191, 294, 481, 554, 1100
FauI CCCGC 2 cut(s) 237, 866
Fnu4HI GCNGC 5 cut(s) 479, 741, 744, 747, 831
FokI GGATG 8 cut(s) 148, 188, 311, 368, 569, 688, 806, 975
Fsp4HI GCNGC 5 cut(s) 479, 741, 744, 747, 831
FspBI CTAG 2 cut(s) 42, 707
GluI GCNGC 5 cut(s) 479, 741, 744, 747, 831
GsaI CCCAGC 2 cut(s) 957, 1086
GsuI CTGGAG 1 cut(s) 1207
HaeIII GGCC 2 cut(s) 683, 808
HapII CCGG 4 cut(s) 378, 1038, 1155, 1172
Hin1II CATG 6 cut(s) 67, 195, 298, 485, 558, 1104
HincII GTYRAC 2 cut(s) 315, 1114
HindII GTYRAC 2 cut(s) 315, 1114
HindIII AAGCTT 2 cut(s) 237, 278
HpaII CCGG 4 cut(s) 378, 1038, 1155, 1172
HphI GGTGA 2 cut(s) 461, 1106
Hpy166II GTNNAC 4 cut(s) 38, 315, 1114, 1143
Hpy188I TCNGA 4 cut(s) 107, 993, 1052, 1214
Hpy188III TCNNGA 7 cut(s) 12, 339, 353, 884, 897, 975, 1224
Hpy8I GTNNAC 4 cut(s) 38, 315, 1114, 1143
Hpy99I CGWCG 1 cut(s) 1180
HpyAV CCTTC 3 cut(s) 579, 798, 890
HpyCH4III ACNGT 4 cut(s) 163, 473, 1057, 1078
HpyCH4IV ACGT 2 cut(s) 910, 1145
HpyCH4V TGCA 7 cut(s) 38, 80, 400, 746, 830, 1072, 1143
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 746, 755
HpyF3I CTNAG 2 cut(s) 345, 810
HpySE526I ACGT 2 cut(s) 910, 1145
Hsp92II CATG 6 cut(s) 67, 195, 298, 485, 558, 1104
KroI GCCGGC 1 cut(s) 1171
KroNI GCCGGC 1 cut(s) 1173
Kzo9I GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
LmnI GCTCC 2 cut(s) 97, 392
Lsp1109I GCAGC 5 cut(s) 490, 727, 730, 758, 842
MaeI CTAG 2 cut(s) 42, 707
MaeII ACGT 2 cut(s) 910, 1145
MaeIII GTNAC 2 cut(s) 716, 937
MalI GATC 6 cut(s) 154, 798, 973, 985, 1011, 1216
MboI GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
MboII GAAGA 1 cut(s) 576
MflI RGATCY 2 cut(s) 971, 1214
MhlI GDGCHC 4 cut(s) 40, 168, 825, 1145
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 6 cut(s) 117, 204, 416, 914, 945, 958
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 4 cut(s) 343, 719, 1036, 1106
MmeI TCCRAC 2 cut(s) 467, 1242
Mox20I TGGCCA 1 cut(s) 683
MroNI GCCGGC 1 cut(s) 1171
MroXI GAANNNNTTC 1 cut(s) 568
MscI TGGCCA 1 cut(s) 683
MseI TTAA 1 cut(s) 560
MslI CAYNNNNRTG 2 cut(s) 299, 486
Msp20I TGGCCA 1 cut(s) 683
MspI CCGG 4 cut(s) 378, 1038, 1155, 1172
MspR9I CCNGG 5 cut(s) 222, 801, 1038, 1155, 1156
MvaI CCWGG 2 cut(s) 222, 801
MvnI CGCG 2 cut(s) 244, 531
MwoI GCNNNNNNNGC 3 cut(s) 86, 746, 755
NaeI GCCGGC 1 cut(s) 1173
NciI CCSGG 3 cut(s) 1038, 1155, 1156
NdeII GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
NgoMIV GCCGGC 1 cut(s) 1171
NlaIII CATG 6 cut(s) 67, 195, 298, 485, 558, 1104
NlaIV GGNNCC 2 cut(s) 394, 441
NspI RCATGY 2 cut(s) 195, 485
NspV TTCGAA 1 cut(s) 187
PaeI GCATGC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 808
PciI ACATGT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 1184
PdiI GCCGGC 1 cut(s) 1173
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 7 cut(s) 225, 289, 304, 994, 1041, 1087, 1252
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 5 cut(s) 480, 742, 745, 748, 832
Ple19I CGATCG 1 cut(s) 1012
PleI GAGTC 4 cut(s) 343, 718, 1035, 1105
PmaCI CACGTG 1 cut(s) 1146
PmlI CACGTG 1 cut(s) 1146
PpsI GAGTC 4 cut(s) 343, 718, 1035, 1105
Ppu21I YACGTR 2 cut(s) 911, 1146
PscI ACATGT 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 220, 799
PspCI CACGTG 1 cut(s) 1146
PspFI CCCAGC 2 cut(s) 953, 1082
PspGI CCWGG 2 cut(s) 220, 799
PspN4I GGNNCC 2 cut(s) 394, 441
PstI CTGCAG 2 cut(s) 748, 832
PsuI RGATCY 2 cut(s) 971, 1214
PvuI CGATCG 1 cut(s) 1012
RsaI GTAC 6 cut(s) 182, 426, 470, 909, 1059, 1107
RsaNI GTAC 6 cut(s) 181, 425, 469, 908, 1058, 1106
RseI CAYNNNNRTG 2 cut(s) 299, 486
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 5 cut(s) 479, 741, 744, 747, 831
Sau3AI GATC 6 cut(s) 152, 796, 971, 983, 1009, 1214
SchI GAGTC 4 cut(s) 343, 719, 1036, 1106
ScrFI CCNGG 5 cut(s) 222, 801, 1038, 1155, 1156
SduI GDGCHC 4 cut(s) 40, 168, 825, 1145
SfcI CTRYAG 2 cut(s) 744, 828
SfuI TTCGAA 1 cut(s) 187
SmaI CCCGGG 1 cut(s) 1156
SmiMI CAYNNNNRTG 2 cut(s) 299, 486
SphI GCATGC 1 cut(s) 485
Sse9I AATT 6 cut(s) 117, 204, 416, 914, 945, 958
SseBI AGGCCT 1 cut(s) 808
SsiI CCGC 5 cut(s) 244, 271, 531, 700, 859
SspMI CTAG 2 cut(s) 42, 707
StuI AGGCCT 1 cut(s) 808
StyD4I CCNGG 5 cut(s) 220, 799, 1036, 1153, 1154
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 4 cut(s) 163, 473, 1057, 1078
TaiI ACGT 2 cut(s) 913, 1148
TaqI TCGA 5 cut(s) 187, 898, 997, 1199, 1255
TasI AATT 6 cut(s) 117, 204, 416, 914, 945, 958
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 7 cut(s) 225, 289, 304, 994, 1041, 1087, 1252
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 5 cut(s) 40, 166, 441, 507, 832
TseI GCWGC 5 cut(s) 478, 740, 743, 746, 830
TspDTI ATGAA 3 cut(s) 17, 152, 281
TspGWI ACGGA 3 cut(s) 1131, 1137, 1193
TspMI CCCGGG 1 cut(s) 1154
TspRI CASTG 5 cut(s) 40, 166, 441, 507, 832
VneI GTGCAC 2 cut(s) 36, 1141
XapI RAATTY 2 cut(s) 416, 958
XceI RCATGY 2 cut(s) 195, 485
XmaI CCCGGG 1 cut(s) 1154
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 2 cut(s) 42, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.