Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006168.1

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Forward (+)

28481 .. 29335

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006168.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgatgttgataaatcaatggtcaactggatttttggcgattgtatcaagagctaagactctggatgtgctatcaactggtgtagccggaaactacaatggagccttgcaagtgataacagcagaatttcaagtaccatctccactgcttccaactggtgagagttattttgtgaggtactgtaagcagcatgccgatggcacttgggcagtggttgatatctccttggaaaatcaacgcggatatacttctgctttgaaatcatgtttaagaagaccttctggttgtctcatccaagaaatgccaaatggaaactcaaaggttacttgggttgagcatgtagaagtggatgaaagaggtgttcacgatctgtacaagcagttggtcaactctggccacgcattcggggcaaaaagatgggttgcgaccttggaccgccaatgtgagcgtctcgccagagccttggcgacaaacatccctaccggtatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

163

Amino Acids

18.01

Weight (kDa)

8.39

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	240, 436
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	3 cut(s)	135, 179, 374
AgeI	ACCGGT	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	131, 259
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	293, 455
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	145, 191, 411
BcoDI	GTCTC	2 cut(s)	293, 455
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	225, 429, 462
BsaWI	WCCGGW	1 cut(s)	482
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	31, 82, 160
BseDI	CCNNGG	3 cut(s)	225, 429, 462
BseGI	GGATG	4 cut(s)	70, 291, 355, 474
BseNI	ACTGG	3 cut(s)	31, 82, 160
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	396
BshTI	ACCGGT	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	87, 483
BsmAI	GTCTC	2 cut(s)	293, 455
BsmBI	CGTCTC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	240, 436
BspANI	GGCC	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	31, 82, 160
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	225, 429, 462
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	3 cut(s)	225, 429, 462
Bst4CI	ACNGT	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	70, 291, 355, 474
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	293, 455
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	2 cut(s)	194, 341
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	4 cut(s)	70, 291, 355, 474
BtsI	GCAGTG	2 cut(s)	143, 216
BtsIMutI	CAGTG	2 cut(s)	143, 216
Cac8I	GCNNGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	134, 178, 373
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	3 cut(s)	191, 264, 338
CviJI	RGCY	5 cut(s)	53, 86, 104, 396, 461
CviKI_1	RGCY	5 cut(s)	53, 86, 104, 396, 461
CviQI	GTAC	3 cut(s)	134, 178, 373
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	394
Eco130I	CCWWGG	3 cut(s)	225, 429, 462
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	3 cut(s)	225, 429, 462
ErhI	CCWWGG	3 cut(s)	225, 429, 462
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	3 cut(s)	194, 267, 341
FaiI	YATR	5 cut(s)	192, 246, 265, 339, 488
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FatI	CATG	3 cut(s)	190, 263, 337
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	4 cut(s)	77, 278, 362, 461
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	87, 483
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	194, 267, 341
HincII	GTYRAC	2 cut(s)	24, 388
HindII	GTYRAC	2 cut(s)	24, 388
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	87, 483
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	24, 364, 388
Hpy188III	TCNNGA	3 cut(s)	48, 62, 365
Hpy8I	GTNNAC	3 cut(s)	24, 364, 388
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	194, 267, 341
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	8 cut(s)	12, 47, 63, 100, 141, 267, 378, 469
Lsp1109I	GCAGC	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	168, 350
Mox20I	TGGCCA	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	2 cut(s)	87, 483
Mva1269I	GAATGC	1 cut(s)	401
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	194, 267, 341
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	2 cut(s)	194, 341
PaeI	GCATGC	1 cut(s)	194
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	277
PinAI	ACCGGT	1 cut(s)	482
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	433
RsaI	GTAC	3 cut(s)	135, 179, 374
RsaNI	GTAC	3 cut(s)	134, 178, 373
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	52
SetI	ASST	6 cut(s)	55, 179, 280, 324, 361, 431
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	2 cut(s)	240, 436
StyI	CCWWGG	3 cut(s)	225, 429, 462
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	1 cut(s)	125
TatI	WGTACW	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	2 cut(s)	150, 216
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	150, 216
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	194, 341
XmnI	GAANNNNTTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.