Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Forward (+)

33026142 .. 33026703

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCGGCAAGCCGGTGGAGAACTACCCTCTTGGCCTCTTATATCTTCACCGGTTCCTCCTCACTGCATGAGTCGGATAAGCCCATGATTATTGAGCCTAGCGTTGCAGCTATGGAAGAGCTAATCCCAATGGCTCAAATTGGCGAACCTTTGTGGATGAATAACATTGATGGATCAACCATTGTGCTCAATGAGGCTGAGTACATTCGAACATTTCCTCGTGGAATTGTGCCACAACAATCTGGATTCAAATGTGAAGCTTCGCGGGAGAGTCTTTGTTGTCATTATGAAGTTATGAACCACAATAACCTTGTTGAGATTCTCATGAATGTGGTAATTAGTTTAGTAATTCAATTGAACTACCTATATATATATATATATATATATATATATATATATATATATATATATATATATACAGATCCTATCCGGAGCGAGGCATCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

149

Amino Acids

17.19

Weight (kDa)

4.8

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	429
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	2 cut(s)	181, 416
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	250, 353, 358
AluBI	AGCT	3 cut(s)	110, 121, 260
AluI	AGCT	3 cut(s)	110, 121, 260
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	181, 416
Aor13HI	TCCGGA	1 cut(s)	429
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	208
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	50, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse118I	RCCGGY	2 cut(s)	12, 50
BseAI	TCCGGA	1 cut(s)	429
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	35
BshTI	ACCGGT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	13, 51, 430
BslI	CCNNNNNNNGG	1 cut(s)	436
BsnI	GGCC	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	173, 421
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	2 cut(s)	181, 416
BspQI	GCTCTTC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	208
BsrFI	RCCGGY	2 cut(s)	12, 50
BssAI	RCCGGY	2 cut(s)	12, 50
BssMI	GATC	2 cut(s)	173, 421
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	176, 424
BstMBI	GATC	2 cut(s)	173, 421
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	10
CciI	TCATGA	1 cut(s)	324
Cfr10I	RCCGGY	2 cut(s)	12, 50
Csp6I	GTAC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	3 cut(s)	68, 85, 325
CviJI	RGCY	9 cut(s)	12, 35, 82, 97, 110, 121, 134, 197, 260
CviKI_1	RGCY	9 cut(s)	12, 35, 82, 97, 110, 121, 134, 197, 260
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	175, 423
DpnII	GATC	2 cut(s)	173, 421
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	71, 88, 328
FatI	CATG	3 cut(s)	67, 84, 324
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	3 cut(s)	13, 51, 430
Hin1II	CATG	3 cut(s)	71, 88, 328
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	4 cut(s)	71, 246, 271, 319
HpaII	CCGG	3 cut(s)	13, 51, 430
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	243, 325, 430
HpyCH4V	TGCA	2 cut(s)	67, 107
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	71, 88, 328
Kpn2I	TCCGGA	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	173, 421
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	432
LpnPI	CCDG	4 cut(s)	26, 64, 228, 443
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	99
MalI	GATC	2 cut(s)	175, 423
MboI	GATC	2 cut(s)	173, 421
MboII	GAAGA	2 cut(s)	37, 128
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	5 cut(s)	138, 225, 336, 348, 353
MlyI	GAGTC	2 cut(s)	80, 280
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	38, 46, 67, 70, 187, 228, 430
MroI	TCCGGA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	3 cut(s)	13, 51, 430
MunI	CAATTG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	265
NdeII	GATC	2 cut(s)	173, 421
NlaIII	CATG	3 cut(s)	71, 88, 328
NlaIV	GGNNCC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	208
PagI	TCATGA	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	246, 319
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	79, 279
PpsI	GAGTC	2 cut(s)	79, 279
PspN4I	GGNNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	173, 421
SchI	GAGTC	2 cut(s)	80, 280
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	112, 123, 151, 262, 312, 366
SfuI	TTCGAA	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	138, 225, 336, 348, 353
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	99
TaqI	TCGA	1 cut(s)	208
TasI	AATT	5 cut(s)	138, 225, 336, 348, 353
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	246, 319
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	173, 303, 311, 341
TspRI	CASTG	1 cut(s)	69
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.