Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Forward (+)

16797714 .. 16800096

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG188600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATACTTCAGGAGACATTATGCGGTCAATCAGTGCACCTAGTGAGGCAGATAAGCCCATGATTATTGAGCTTGCATTTGTAGCTATGGAGGAGCTAATCCGAATGGCTCAAATTGGCGAGCCTTTGTGGATGAATAGCATTGATGGATCAACCACTGTGCTCAATGAGGATGAGTACATTCGAACATGTCCTCGTGGAATTGTGCCGAAACAACCTGGATTCAAATGTGAAGCTTCGCCGGAGAGTGCTGTTGTCATTATGAACCGCAATAAGCTTATTGAGATTCTCATGGATGTGAATCAATGGTCAACTAGATTTTTGGTGACTGTATCAAGAGGTAAGACTCTGGATGTGCTATCAACTGGAGTAGCCGGAAACTACAATGGAGCCTTGCAAGTGATAACAGCAGAATTTCAAGTACCATCTCCACTGGTTACTTGGGTTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCACGATCTGTACAAGCAGTTGGTCAACTCTGGCCACGCATTCGGGGCAAAAAGATGGGTTGCGACCCATTGGACCGCCAATGTGAGCATCTCGCCAGAGCCTTGGCGACAAACATCCCTACCGGTATGTAATAACTACTTATTAATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

209

Amino Acids

23.24

Weight (kDa)

5.23

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	25 - 146	3.6e-12	START domain
START	PF01852	146 - 181	1.9e-07	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	25, 268, 552
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	413
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	3 cut(s)	179, 423, 488
AflIII	ACRYGT	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	226, 419
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	5 cut(s)	73, 86, 97, 236, 277
AluI	AGCT	5 cut(s)	73, 86, 97, 236, 277
Alw21I	GWGCWC	2 cut(s)	40, 165
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	508
ApaLI	GTGCAC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	413
AseI	ATTAAT	1 cut(s)	620
AsiGI	ACCGGT	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	510
BauI	CACGAG	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	40, 165
BccI	CCATC	3 cut(s)	140, 433, 525
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	42, 315
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	370, 438
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	6 cut(s)	138, 178, 301, 358, 469, 590
BseJI	GATNNNNATC	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	370, 438
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	510
BshTI	ACCGGT	1 cut(s)	598
BsiHKAI	GWGCWC	2 cut(s)	40, 165
BsiSI	CCGG	3 cut(s)	242, 375, 599
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	510
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	40, 165
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	149, 481
BspACI	CCGC	3 cut(s)	25, 268, 552
BspANI	GGCC	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	157
BspT104I	TTCGAA	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	370, 438
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	149, 481
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	160, 331
BstAUI	TGTACA	1 cut(s)	486
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	75, 122
BstF5I	GGATG	6 cut(s)	138, 178, 301, 358, 469, 590
BstKTI	GATC	2 cut(s)	152, 484
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	149, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 521
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	2 cut(s)	192, 455
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	6 cut(s)	138, 178, 301, 358, 469, 590
BtsIMutI	CAGTG	3 cut(s)	40, 156, 431
Cac8I	GCNNGC	2 cut(s)	75, 122
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	549
Csp6I	GTAC	3 cut(s)	178, 422, 487
CspAI	ACCGGT	1 cut(s)	598
CviAII	CATG	4 cut(s)	61, 189, 292, 452
CviQI	GTAC	3 cut(s)	178, 422, 487
DpnI	GATC	2 cut(s)	151, 483
DpnII	GATC	2 cut(s)	149, 481
DraIII	CACNNNGTG	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	4 cut(s)	64, 192, 295, 455
FaiI	YATR	8 cut(s)	23, 62, 89, 190, 263, 293, 453, 604
FatI	CATG	4 cut(s)	60, 188, 291, 451
FokI	GGATG	6 cut(s)	145, 185, 308, 365, 476, 577
FspBI	CTAG	2 cut(s)	42, 315
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	3 cut(s)	242, 375, 599
Hin1II	CATG	4 cut(s)	64, 192, 295, 455
HincII	GTYRAC	2 cut(s)	312, 502
HindII	GTYRAC	2 cut(s)	312, 502
HindIII	AAGCTT	2 cut(s)	234, 275
HinfI	GANTC	4 cut(s)	222, 286, 301, 346
HpaII	CCGG	3 cut(s)	242, 375, 599
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	4 cut(s)	38, 312, 478, 502
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	4 cut(s)	12, 336, 350, 479
Hpy8I	GTNNAC	4 cut(s)	38, 312, 478, 502
HpyCH4III	ACNGT	2 cut(s)	160, 331
HpyCH4V	TGCA	3 cut(s)	38, 77, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 521
Hsp92II	CATG	4 cut(s)	64, 192, 295, 455
Kzo9I	GATC	2 cut(s)	149, 481
LmnI	GCTCC	2 cut(s)	94, 389
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	2 cut(s)	42, 315
MaeIII	GTNAC	2 cut(s)	325, 436
MalI	GATC	2 cut(s)	151, 483
MboI	GATC	2 cut(s)	149, 481
MhlI	GDGCHC	2 cut(s)	40, 165
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	4 cut(s)	114, 201, 413, 621
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	40, 85, 163, 204, 332, 464
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	3 cut(s)	242, 375, 599
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	83, 521
NdeII	GATC	2 cut(s)	149, 481
NlaIII	CATG	4 cut(s)	64, 192, 295, 455
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	2 cut(s)	192, 455
NspV	TTCGAA	1 cut(s)	184
PciI	ACATGT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	222, 286, 301
PinAI	ACCGGT	1 cut(s)	598
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	549
RsaI	GTAC	3 cut(s)	179, 423, 488
RsaNI	GTAC	3 cut(s)	178, 422, 487
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	620
Sau3AI	GATC	2 cut(s)	149, 481
Sau96I	GGNCC	1 cut(s)	549
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	40, 165
SetI	ASST	9 cut(s)	43, 75, 88, 99, 220, 238, 279, 343, 475
SfaNI	GCATC	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	114, 201, 413, 621
SsiI	CCGC	3 cut(s)	25, 268, 552
SspMI	CTAG	2 cut(s)	42, 315
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	160, 331
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	114, 201, 413, 621
TatI	WGTACW	2 cut(s)	177, 486
TfiI	GAWTC	3 cut(s)	222, 286, 301
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TscAI	CASTG	3 cut(s)	40, 163, 438
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	17, 149, 278, 480
TspRI	CASTG	3 cut(s)	40, 163, 438
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	549
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	2 cut(s)	192, 455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XspI	CTAG	2 cut(s)	42, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.