Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016995

Physical Location & Seq

Genomic Coordinates Forward (+)

36132450 .. 36134377

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGCCGGTTAGTGGCATTGAGAATGCTAGGGAAGAGTACCCTACACCTGTTCTTGGAGCTGCTGAGAATTCATCAAACATTCCCTCCCCAGTTGAGGTTGTCCAGACCGTGGCACGAAGGATATCCAACTCAGCCACTGAAGCAGACAAAGAAGCCTGTGACCATCATCCCTTGGAGAAAAATTGTGATGACAGTGGAGGATTGAAAACCTTGAATATTCAATTTGAGATGAGTTTTCCTATTGCTACTTGGCTTGAGAAAATTCAAAAGGATGCAGTTTTACCTCCAGTGGCTCAGTTTAAGCTACCTCAGTTTTCCTCGAGCATCAAGAAACTTGTTCTCCTGACTGGTGCTTTAAAACCTGTTATTGATTTACTGAGTTCACCTTGTTTGAGCTTAGCTTTGGCAATTGGGAGGTTGGCACAAGACACACATAACCAAGCTGACATTGCTCATAATGGTCGCGTAGTGCCTCTACTCAAGTTACTTCATTCAAAAAATGAATCTCTGCAACACAATGCTGCATTTGCTCTATATGGTCTTGCAGATAAGGAGGACAACATTGTAGCTCTTATAAAATTTGGAATTGTTCAGAAATTTGAAGATGGAGAATTCCTTGTTCAACAAACTAAGGATTGTGTTGAAAAGACATTGAAAAGATTAGAGGGGAATATTTGTGGACGAGTATCGAACAATCTATTATATCTAATGCGGGTTACTGACGAGGCCGTTCAAAGTCAAGTGGCTTTGGCTTTTGCTCATCTTTGTAAGCCTGGAGGTTGTCATGTCATTTTCAGTGAACATAAAGCAATGAAGCTGCTCTTGGTGCTTCTTGATTATAAAAGCCTGAAAAGCCTGAAGCTACAACATGATGGTTCATTGGCCTTGCAAAAAGTGGCTACAAAAGCCACTCCACTCTCTCTTGATGTGATTGCGGAATCTCTCACGGTGCATTGTTCTATGGTTGTGGAAGCTTCTATAATATTGCGGTATTCTTCTCTTCTACATTCTTCATTGGATTGTGTTGACTTCAGGTCTGCAATGCTTAATTTTATTCATTATTGTGTTTGCCTTGTTCATGCACATGAACATGCACTAGACTATTTATTCATGACCTATACTGTACATACTCTCTCACTCCCTGTGGCTACAATGTTTATCAAAGATGTTACTGGTGGTAACCTCTATCTATTTGAAGTGGCCGTACTCCACTTCCTTTGCCAAACTAAAGCTAGCTGCCACCCAAGGAGCTTTATTGTTGATGAATTTTTTGACTTTCTGAAAAGCAATTCAAAATTATCTTTTGTGAGGTACACTTGTGATGTACTTCTTTCAAGTGATAATTGTGTAGGCTTTTTGACTAATATGCACAAGTTTTTTCAACACATGGTGGGACATGTTCATGAAGATGAGCTTTTCATGGCAACTTGCTCTTCCACTTCTTGTCCTCCATTCCATGCACTTGTGAAGAAATTGTTTCTTTTATCACCTGTGGTTGCTATCCATTTATTACGACCACTTTTGGCTGACATATTGAGAGATGATGCACAGTTTATCTTTGGAATTATGATGGTTTTCTCTATGAATGAGCTGATGTCTTTGAGGTCTAAGAAGCAGGGCCTTGAAATTGGGTATAGTGATATTGATAATGGAAATTATTGCTCTTTTATGAGCTGTTCTCTTCACTTGCCTCATTTCATGATTACATGGTTTTTTGACTTCACTTCTGTGGCAATGGCCTTGGAGATCTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010556 GO:0010558 GO:0010605 GO:0016020 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0034645 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090329 GO:0097305 GO:1900140 GO:1901360 GO:1901576 GO:1901700 GO:2000026 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

585

Amino Acids

65.15

Weight (kDa)

6.26

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016995)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0488471 RchiOBHm_Chr5g0027461 RchiOBHm_Chr6g0244361 RchiOBHm_Chr7g0200771
rosa_multiflora	Rmu_co8359501.1_g000001 Rmu_sc0004533.1_g000001 Rmu_sc0006898.1_g000005 Rmu_sc0032734.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027710 Rroxscaffold_1G00074240
rosa_samantha	Rh5BG270700 Rh6AG023200 Rh7CG467100
rosa_wichuraiana	Rw3G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	575, 840
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	1 cut(s)	465
AciI	CCGC	3 cut(s)	712, 935, 988
AcoI	YGGCCR	1 cut(s)	1200
AcsI	RAATTY	6 cut(s)	67, 261, 578, 596, 611, 1265
AcuI	CTGAAG	3 cut(s)	159, 878, 1015
AdeI	CACNNNGTG	1 cut(s)	1390
AfaI	GTAC	5 cut(s)	38, 1125, 1206, 1313, 1326
AfiI	CCNNNNNNNGG	4 cut(s)	11, 53, 94, 109
AflIII	ACRYGT	1 cut(s)	1396
AhdI	GACNNNNNGTC	1 cut(s)	1033
AjnI	CCWGG	1 cut(s)	772
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AleI	CACNNNNGTG	1 cut(s)	1727
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	5 cut(s)	726, 882, 1200, 1618, 1737
ApeKI	GCWGC	4 cut(s)	59, 521, 817, 1236
ApoI	RAATTY	6 cut(s)	67, 261, 578, 596, 611, 1265
AspS9I	GGNCC	1 cut(s)	1618
AsuHPI	GGTGA	2 cut(s)	375, 1479
AsuNHI	GCTAGC	1 cut(s)	1232
AvaI	CYCGRG	1 cut(s)	319
BaeI	ACNNNNGTAYC	2 cut(s)	1303, 1336
BarI	GAAGNNNNNNTAC	2 cut(s)	1188, 1220
BbvI	GCAGC	4 cut(s)	46, 508, 804, 1223
BccI	CCATC	4 cut(s)	171, 599, 866, 1564
BceAI	ACGGC	2 cut(s)	713, 1187
BciT130I	CCWGG	1 cut(s)	774
BfaI	CTAG	3 cut(s)	27, 1097, 1233
BglII	AGATCT	1 cut(s)	1746
BisI	GCNGC	4 cut(s)	60, 522, 818, 1237
BlpI	GCTNAGC	1 cut(s)	397
BlsI	GCNGC	4 cut(s)	61, 523, 819, 1238
Bme1390I	CCNGG	1 cut(s)	774
BmeRI	GACNNNNNGTC	1 cut(s)	1033
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	1618
BmrFI	CCNGG	1 cut(s)	774
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	262, 333, 1534
BmtI	GCTAGC	1 cut(s)	1236
BmuI	ACTGGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	1663, 1695
BpmI	CTGGAG	2 cut(s)	270, 795
Bpu1102I	GCTNAGC	1 cut(s)	397
BpuEI	CTTGAG	2 cut(s)	275, 464
BsaJI	CCNNGG	4 cut(s)	108, 171, 1244, 1740
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 324, 354
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 53, 94, 109
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	4 cut(s)	89, 287, 352, 1177
Bse3DI	GCAATG	4 cut(s)	447, 816, 1047, 1740
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	4 cut(s)	108, 171, 1244, 1740
BseGI	GGATG	2 cut(s)	166, 277
BseLI	CCNNNNNNNGG	4 cut(s)	11, 53, 94, 109
BseMI	GCAATG	4 cut(s)	447, 816, 1047, 1740
BseMII	CTCAG	5 cut(s)	54, 144, 308, 323, 368
BseNI	ACTGG	4 cut(s)	89, 287, 352, 1177
BseXI	GCAGC	4 cut(s)	46, 508, 804, 1223
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	5 cut(s)	728, 884, 1202, 1620, 1739
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	1407
BslI	CCNNNNNNNGG	4 cut(s)	11, 53, 94, 109
BsmFI	GGGAC	1 cut(s)	1407
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	5 cut(s)	728, 884, 1202, 1620, 1739
BsoBI	CYCGRG	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	1123
Bsp143I	GATC	1 cut(s)	1746
Bsp1720I	GCTNAGC	1 cut(s)	397
BspACI	CCGC	3 cut(s)	712, 935, 988
BspANI	GGCC	5 cut(s)	728, 884, 1202, 1620, 1739
BspCNI	CTCAG	5 cut(s)	55, 143, 307, 322, 369
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	3 cut(s)	1110, 1402, 1698
BspOI	GCTAGC	1 cut(s)	1236
BspQI	GCTCTTC	1 cut(s)	1438
BsrDI	GCAATG	4 cut(s)	447, 816, 1047, 1740
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	1123
BsrI	ACTGG	4 cut(s)	89, 287, 352, 1177
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	4 cut(s)	108, 171, 1244, 1740
BssMI	GATC	1 cut(s)	1746
BssT1I	CCWWGG	3 cut(s)	171, 1244, 1740
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	5 cut(s)	109, 194, 949, 1123, 1551
Bst6I	CTCTTC	4 cut(s)	27, 1005, 1438, 1686
BstAUI	TGTACA	1 cut(s)	1123
BstC8I	GCNNGC	1 cut(s)	1234
BstDEI	CTNAG	8 cut(s)	63, 130, 294, 309, 377, 397, 630, 1608
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	1178
BstF5I	GGATG	2 cut(s)	166, 277
BstFNI	CGCG	1 cut(s)	465
BstKTI	GATC	1 cut(s)	1749
BstMBI	GATC	1 cut(s)	1746
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 449, 527, 826, 852, 905
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	2 cut(s)	1094, 1400
BstPI	GGTNACC	1 cut(s)	1178
BstSCI	CCNGG	1 cut(s)	772
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	46, 508, 804, 1223
BstX2I	RGATCY	1 cut(s)	1746
BstYI	RGATCY	1 cut(s)	1746
BsuRI	GGCC	5 cut(s)	728, 884, 1202, 1620, 1739
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	166, 277
BtsIMutI	CAGTG	4 cut(s)	135, 199, 294, 802
Cac8I	GCNNGC	1 cut(s)	1234
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	3 cut(s)	1110, 1402, 1698
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	1618
Csp6I	GTAC	5 cut(s)	37, 1124, 1205, 1312, 1325
CspCI	CAANNNNNGTGG	2 cut(s)	1199, 1234
CviQI	GTAC	5 cut(s)	37, 1124, 1205, 1312, 1325
DdeI	CTNAG	8 cut(s)	63, 130, 294, 309, 377, 397, 630, 1608
DpnI	GATC	1 cut(s)	1748
DpnII	GATC	1 cut(s)	1746
DraI	TTTAAA	1 cut(s)	357
DraIII	CACNNNGTG	1 cut(s)	1390
DriI	GACNNNNNGTC	1 cut(s)	1033
EaeI	YGGCCR	1 cut(s)	1200
Eam1104I	CTCTTC	4 cut(s)	27, 1005, 1438, 1686
Eam1105I	GACNNNNNGTC	1 cut(s)	1033
EarI	CTCTTC	4 cut(s)	27, 1005, 1438, 1686
Eco130I	CCWWGG	3 cut(s)	171, 1244, 1740
Eco32I	GATATC	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	159, 878, 1015
Eco88I	CYCGRG	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	1178
EcoO109I	RGGNCCY	1 cut(s)	1618
EcoO65I	GGTNACC	1 cut(s)	1178
EcoRI	GAATTC	2 cut(s)	67, 611
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	171, 1244, 1740
ErhI	CCWWGG	3 cut(s)	171, 1244, 1740
FalI	AAGNNNNNCTT	4 cut(s)	806, 838, 1398, 1430
FaqI	GGGAC	1 cut(s)	1407
FauI	CCCGC	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	60, 522, 818, 1237
FokI	GGATG	2 cut(s)	153, 284
Fsp4HI	GCNGC	4 cut(s)	60, 522, 818, 1237
FspBI	CTAG	3 cut(s)	27, 1097, 1233
GluI	GCNGC	4 cut(s)	60, 522, 818, 1237
GsuI	CTGGAG	2 cut(s)	270, 795
HaeIII	GGCC	5 cut(s)	728, 884, 1202, 1620, 1739
HapII	CCGG	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HindIII	AAGCTT	1 cut(s)	972
HinfI	GANTC	2 cut(s)	503, 938
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	375, 1479
Hpy166II	GTNNAC	5 cut(s)	383, 680, 800, 1027, 1314
Hpy188I	TCNGA	2 cut(s)	594, 1281
Hpy188III	TCNNGA	8 cut(s)	103, 328, 343, 833, 923, 1111, 1403, 1699
Hpy8I	GTNNAC	5 cut(s)	383, 680, 800, 1027, 1314
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	5 cut(s)	109, 194, 949, 1123, 1551
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 449, 527, 826, 852, 905
HpyF3I	CTNAG	8 cut(s)	63, 130, 294, 309, 377, 397, 630, 1608
Kzo9I	GATC	1 cut(s)	1746
LguI	GCTCTTC	1 cut(s)	1438
LmnI	GCTCC	2 cut(s)	56, 1248
Lsp1109I	GCAGC	4 cut(s)	46, 508, 804, 1223
LweI	GCATC	3 cut(s)	262, 333, 1534
MaeI	CTAG	3 cut(s)	27, 1097, 1233
MaeIII	GTNAC	5 cut(s)	158, 483, 715, 1168, 1178
MalI	GATC	1 cut(s)	1748
MboI	GATC	1 cut(s)	1746
MboII	GAAGA	9 cut(s)	44, 614, 987, 992, 1002, 1418, 1425, 1480, 1673
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	1746
MmeI	TCCRAC	1 cut(s)	150
MseI	TTAA	4 cut(s)	300, 356, 1047, 1756
MslI	CAYNNNNRTG	6 cut(s)	1062, 1083, 1089, 1401, 1407, 1727
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	774
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	6 cut(s)	140, 449, 527, 826, 852, 905
NdeII	GATC	1 cut(s)	1746
NheI	GCTAGC	1 cut(s)	1232
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	2 cut(s)	1094, 1400
OliI	CACNNNNGTG	1 cut(s)	1727
PaeR7I	CTCGAG	1 cut(s)	319
PagI	TCATGA	3 cut(s)	1110, 1402, 1698
PciI	ACATGT	1 cut(s)	1396
PciSI	GCTCTTC	1 cut(s)	1438
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	503, 938
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	61, 523, 819, 1238
PscI	ACATGT	1 cut(s)	1396
PsiI	TTATAA	2 cut(s)	575, 840
Psp6I	CCWGG	1 cut(s)	772
PspEI	GGTNACC	1 cut(s)	1178
PspGI	CCWGG	1 cut(s)	772
PspPI	GGNCC	1 cut(s)	1618
PspXI	VCTCGAGB	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	1746
RsaI	GTAC	5 cut(s)	38, 1125, 1206, 1313, 1326
RsaNI	GTAC	5 cut(s)	37, 1124, 1205, 1312, 1325
RseI	CAYNNNNRTG	6 cut(s)	1062, 1083, 1089, 1401, 1407, 1727
SapI	GCTCTTC	1 cut(s)	1438
SaqAI	TTAA	4 cut(s)	300, 356, 1047, 1756
SatI	GCNGC	4 cut(s)	60, 522, 818, 1237
Sau3AI	GATC	1 cut(s)	1746
Sau96I	GGNCC	1 cut(s)	1618
ScrFI	CCNGG	1 cut(s)	774
SfaNI	GCATC	3 cut(s)	262, 333, 1534
Sfr274I	CTCGAG	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	6 cut(s)	1062, 1083, 1089, 1401, 1407, 1727
SmlI	CTYRAG	3 cut(s)	254, 319, 479
SmoI	CTYRAG	3 cut(s)	254, 319, 479
SsiI	CCGC	3 cut(s)	712, 935, 988
SspI	AATATT	3 cut(s)	217, 673, 984
SspMI	CTAG	3 cut(s)	27, 1097, 1233
StyD4I	CCNGG	1 cut(s)	772
StyI	CCWWGG	3 cut(s)	171, 1244, 1740
TaaI	ACNGT	5 cut(s)	109, 194, 949, 1123, 1551
TaqI	TCGA	2 cut(s)	320, 689
TatI	WGTACW	2 cut(s)	1123, 1324
TfiI	GAWTC	2 cut(s)	503, 938
Tru1I	TTAA	4 cut(s)	300, 356, 1047, 1756
Tru9I	TTAA	4 cut(s)	300, 356, 1047, 1756
TscAI	CASTG	4 cut(s)	142, 199, 294, 802
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	4 cut(s)	59, 521, 817, 1236
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	4 cut(s)	142, 199, 294, 802
Van91I	CCANNNNNTGG	1 cut(s)	109
XapI	RAATTY	6 cut(s)	67, 261, 578, 596, 611, 1265
XceI	RCATGY	2 cut(s)	1094, 1400
XhoI	CTCGAG	1 cut(s)	319
XspI	CTAG	3 cut(s)	27, 1097, 1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.