Broad-Complex, Tramtrack and Bric a brac
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0488471 RchiOBHm_Chr5g0027461 RchiOBHm_Chr6g0244361 RchiOBHm_Chr7g0200771 |
| rosa_multiflora | Rmu_co8359501.1_g000001 Rmu_sc0004533.1_g000001 Rmu_sc0006898.1_g000005 Rmu_sc0032734.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00027710 Rroxscaffold_1G00074240 |
| rosa_samantha | Rh5BG270700 Rh6AG023200 Rh7CG467100 |
| rosa_wichuraiana | Rw3G025410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 159 |
| AcsI | RAATTY | 2 cut(s) | 234, 250 |
| AgsI | TTSAA | 3 cut(s) | 224, 241, 283 |
| AluBI | AGCT | 2 cut(s) | 83, 209 |
| AluI | AGCT | 2 cut(s) | 83, 209 |
| Ama87I | CYCGRG | 1 cut(s) | 5 |
| AoxI | GGCC | 1 cut(s) | 39 |
| ApoI | RAATTY | 2 cut(s) | 234, 250 |
| AsuHPI | GGTGA | 2 cut(s) | 3, 43 |
| AsuII | TTCGAA | 1 cut(s) | 134 |
| AvaI | CYCGRG | 1 cut(s) | 5 |
| BccI | CCATC | 1 cut(s) | 238 |
| BfaI | CTAG | 2 cut(s) | 65, 116 |
| BmeT110I | CYCGRG | 1 cut(s) | 5 |
| Bpu14I | TTCGAA | 1 cut(s) | 134 |
| Bse3DI | GCAATG | 3 cut(s) | 87, 289, 301 |
| BseMI | GCAATG | 3 cut(s) | 87, 289, 301 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5 |
| BsnI | GGCC | 1 cut(s) | 41 |
| BsoBI | CYCGRG | 1 cut(s) | 5 |
| Bsp119I | TTCGAA | 1 cut(s) | 134 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspT104I | TTCGAA | 1 cut(s) | 134 |
| BsrDI | GCAATG | 3 cut(s) | 87, 289, 301 |
| BstBI | TTCGAA | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 1 cut(s) | 85 |
| BstDEI | CTNAG | 1 cut(s) | 269 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| Cac8I | GCNNGC | 1 cut(s) | 85 |
| CviJI | RGCY | 3 cut(s) | 41, 83, 209 |
| CviKI_1 | RGCY | 3 cut(s) | 41, 83, 209 |
| DdeI | CTNAG | 1 cut(s) | 269 |
| Eco88I | CYCGRG | 1 cut(s) | 5 |
| EcoRI | GAATTC | 1 cut(s) | 250 |
| FaiI | YATR | 4 cut(s) | 99, 107, 175, 177 |
| FspBI | CTAG | 2 cut(s) | 65, 116 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| HinfI | GANTC | 3 cut(s) | 8, 17, 143 |
| HphI | GGTGA | 2 cut(s) | 3, 43 |
| Hpy188I | TCNGA | 1 cut(s) | 233 |
| HpyCH4IV | ACGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 5 cut(s) | 47, 151, 164, 185, 294 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 1 cut(s) | 269 |
| HpySE526I | ACGT | 1 cut(s) | 159 |
| LpnPI | CCDG | 3 cut(s) | 13, 27, 69 |
| MaeI | CTAG | 2 cut(s) | 65, 116 |
| MaeII | ACGT | 1 cut(s) | 159 |
| MaeIII | GTNAC | 2 cut(s) | 9, 123 |
| MboII | GAAGA | 1 cut(s) | 253 |
| MfeI | CAATTG | 1 cut(s) | 48 |
| MluCI | AATT | 5 cut(s) | 48, 130, 224, 234, 250 |
| MlyI | GAGTC | 1 cut(s) | 17 |
| MnlI | CCTC | 3 cut(s) | 48, 123, 187 |
| MseI | TTAA | 1 cut(s) | 129 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| MunI | CAATTG | 1 cut(s) | 48 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 9 |
| NspV | TTCGAA | 1 cut(s) | 134 |
| PaeR7I | CTCGAG | 1 cut(s) | 5 |
| PfeI | GAWTC | 2 cut(s) | 17, 143 |
| PleI | GAGTC | 1 cut(s) | 16 |
| PpsI | GAGTC | 1 cut(s) | 16 |
| Psp1406I | AACGTT | 1 cut(s) | 159 |
| PspXI | VCTCGAGB | 1 cut(s) | 5 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SaqAI | TTAA | 1 cut(s) | 129 |
| SchI | GAGTC | 1 cut(s) | 17 |
| SetI | ASST | 5 cut(s) | 16, 59, 85, 162, 211 |
| Sfr274I | CTCGAG | 1 cut(s) | 5 |
| SfuI | TTCGAA | 1 cut(s) | 134 |
| SlaI | CTCGAG | 1 cut(s) | 5 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 1 cut(s) | 5 |
| SmoI | CTYRAG | 1 cut(s) | 5 |
| Sse9I | AATT | 5 cut(s) | 48, 130, 224, 234, 250 |
| SspMI | CTAG | 2 cut(s) | 65, 116 |
| TaiI | ACGT | 1 cut(s) | 162 |
| TaqI | TCGA | 2 cut(s) | 6, 134 |
| TasI | AATT | 5 cut(s) | 48, 130, 224, 234, 250 |
| TfiI | GAWTC | 2 cut(s) | 17, 143 |
| Tru1I | TTAA | 1 cut(s) | 129 |
| Tru9I | TTAA | 1 cut(s) | 129 |
| TseFI | GTSAC | 1 cut(s) | 9 |
| Tsp45I | GTSAC | 1 cut(s) | 9 |
| TspDTI | ATGAA | 1 cut(s) | 156 |
| XapI | RAATTY | 2 cut(s) | 234, 250 |
| XhoI | CTCGAG | 1 cut(s) | 5 |
| XspI | CTAG | 2 cut(s) | 65, 116 |