Broad-Complex, Tramtrack and Bric a brac
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0488471 RchiOBHm_Chr5g0027461 RchiOBHm_Chr6g0244361 RchiOBHm_Chr7g0200771 |
| rosa_multiflora | Rmu_co8359501.1_g000001 Rmu_sc0004533.1_g000001 Rmu_sc0006898.1_g000005 Rmu_sc0032734.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00027710 Rroxscaffold_1G00074240 |
| rosa_samantha | Rh5BG270700 Rh6AG023200 Rh7CG467100 |
| rosa_wichuraiana | Rw3G025410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 185 |
| AfaI | GTAC | 1 cut(s) | 30 |
| AflII | CTTAAG | 1 cut(s) | 403 |
| AgsI | TTSAA | 5 cut(s) | 230, 251, 262, 311, 370 |
| AjnI | CCWGG | 1 cut(s) | 349 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 210, 242 |
| AluBI | AGCT | 4 cut(s) | 50, 176, 323, 390 |
| AluI | AGCT | 4 cut(s) | 50, 176, 323, 390 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 390 |
| ApeKI | GCWGC | 4 cut(s) | 128, 173, 384, 387 |
| ApoI | RAATTY | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 1 cut(s) | 365 |
| BbvI | GCAGC | 4 cut(s) | 115, 185, 396, 399 |
| BciT130I | CCWGG | 1 cut(s) | 351 |
| BfrI | CTTAAG | 1 cut(s) | 403 |
| BisI | GCNGC | 4 cut(s) | 129, 174, 385, 388 |
| BlsI | GCNGC | 4 cut(s) | 130, 175, 386, 389 |
| Bme1390I | CCNGG | 1 cut(s) | 351 |
| BmrFI | CCNGG | 1 cut(s) | 351 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| Bse3DI | GCAATG | 2 cut(s) | 54, 168 |
| BseBI | CCWGG | 1 cut(s) | 351 |
| BseMI | GCAATG | 2 cut(s) | 54, 168 |
| BseXI | GCAGC | 4 cut(s) | 115, 185, 396, 399 |
| BsgI | GTGCAG | 1 cut(s) | 101 |
| BsmI | GAATGC | 1 cut(s) | 386 |
| BspTI | CTTAAG | 1 cut(s) | 403 |
| BsrDI | GCAATG | 2 cut(s) | 54, 168 |
| Bst2UI | CCWGG | 1 cut(s) | 351 |
| BstAFI | CTTAAG | 1 cut(s) | 403 |
| BstC8I | GCNNGC | 1 cut(s) | 52 |
| BstDEI | CTNAG | 1 cut(s) | 237 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 134, 302, 396 |
| BstNI | CCWGG | 1 cut(s) | 351 |
| BstSCI | CCNGG | 1 cut(s) | 349 |
| BstV1I | GCAGC | 4 cut(s) | 115, 185, 396, 399 |
| Cac8I | GCNNGC | 1 cut(s) | 52 |
| CaiI | CAGNNNCTG | 1 cut(s) | 390 |
| Csp6I | GTAC | 1 cut(s) | 29 |
| CviJI | RGCY | 9 cut(s) | 8, 50, 176, 305, 323, 349, 390, 399, 416 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 50, 176, 305, 323, 349, 390, 399, 416 |
| CviQI | GTAC | 1 cut(s) | 29 |
| DdeI | CTNAG | 1 cut(s) | 237 |
| EcoRII | CCWGG | 1 cut(s) | 349 |
| FaiI | YATR | 6 cut(s) | 42, 63, 74, 142, 144, 326 |
| Fnu4HI | GCNGC | 4 cut(s) | 129, 174, 385, 388 |
| Fsp4HI | GCNGC | 4 cut(s) | 129, 174, 385, 388 |
| GluI | GCNGC | 4 cut(s) | 129, 174, 385, 388 |
| HinfI | GANTC | 3 cut(s) | 110, 219, 242 |
| HphI | GGTGA | 1 cut(s) | 365 |
| Hpy188I | TCNGA | 1 cut(s) | 201 |
| Hpy188III | TCNNGA | 1 cut(s) | 285 |
| HpyCH4V | TGCA | 8 cut(s) | 14, 72, 118, 131, 152, 173, 208, 384 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 134, 302, 396 |
| HpyF3I | CTNAG | 1 cut(s) | 237 |
| LpnPI | CCDG | 4 cut(s) | 36, 270, 336, 363 |
| Lsp1109I | GCAGC | 4 cut(s) | 115, 185, 396, 399 |
| MaeIII | GTNAC | 1 cut(s) | 90 |
| MboII | GAAGA | 1 cut(s) | 289 |
| MfeI | CAATTG | 1 cut(s) | 15 |
| MluCI | AATT | 5 cut(s) | 15, 97, 185, 192, 203 |
| MnlI | CCTC | 5 cut(s) | 90, 154, 205, 209, 265 |
| MseI | TTAA | 4 cut(s) | 96, 183, 345, 404 |
| MslI | CAYNNNNRTG | 1 cut(s) | 123 |
| MspA1I | CMGCKG | 1 cut(s) | 390 |
| MspCI | CTTAAG | 1 cut(s) | 403 |
| MspR9I | CCNGG | 1 cut(s) | 351 |
| MunI | CAATTG | 1 cut(s) | 15 |
| Mva1269I | GAATGC | 1 cut(s) | 386 |
| MvaI | CCWGG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 134, 302, 396 |
| PctI | GAATGC | 1 cut(s) | 386 |
| PfeI | GAWTC | 3 cut(s) | 110, 219, 242 |
| PkrI | GCNGC | 4 cut(s) | 130, 175, 386, 389 |
| Psp6I | CCWGG | 1 cut(s) | 349 |
| PspGI | CCWGG | 1 cut(s) | 349 |
| PstNI | CAGNNNCTG | 1 cut(s) | 390 |
| PvuII | CAGCTG | 1 cut(s) | 390 |
| RsaI | GTAC | 1 cut(s) | 30 |
| RsaNI | GTAC | 1 cut(s) | 29 |
| RseI | CAYNNNNRTG | 1 cut(s) | 123 |
| SaqAI | TTAA | 4 cut(s) | 96, 183, 345, 404 |
| SatI | GCNGC | 4 cut(s) | 129, 174, 385, 388 |
| ScrFI | CCNGG | 1 cut(s) | 351 |
| SetI | ASST | 4 cut(s) | 52, 178, 325, 392 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 123 |
| SmlI | CTYRAG | 2 cut(s) | 86, 403 |
| SmoI | CTYRAG | 2 cut(s) | 86, 403 |
| Sse9I | AATT | 5 cut(s) | 15, 97, 185, 192, 203 |
| StyD4I | CCNGG | 1 cut(s) | 349 |
| TaqI | TCGA | 1 cut(s) | 316 |
| TasI | AATT | 5 cut(s) | 15, 97, 185, 192, 203 |
| TfiI | GAWTC | 3 cut(s) | 110, 219, 242 |
| Tru1I | TTAA | 4 cut(s) | 96, 183, 345, 404 |
| Tru9I | TTAA | 4 cut(s) | 96, 183, 345, 404 |
| TseI | GCWGC | 4 cut(s) | 128, 173, 384, 387 |
| TspDTI | ATGAA | 2 cut(s) | 123, 354 |
| Vha464I | CTTAAG | 1 cut(s) | 403 |
| XapI | RAATTY | 1 cut(s) | 185 |