Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016995

Physical Location & Seq

Genomic Coordinates Reverse (-)

33919407 .. 33921212

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGGTGGAGGTTGCGGTAGTCTCTGGGATAGTAGCAAGCCTTTATAAAGAATTTATTGGAACAAAGAAGAAAGTTAGTATTGGGGTCATATCACCATACAAGGCTCAAGTTTATGAAACCAGTTTCCATCTGAAAAAGGCAAAAAAATGGCCAAAATCACATGAAATTGAGCAGCAGGAATCCATCATGGCGGTTAGTGGCATTGAGAATGCTAGGGAAGAGTACCCTACACCTGTTCTTGGAGCTGTTGAGAATTCATCAAACATTCCCTCCCCAGTTGAGGTTGTCCAGACCGTGGCACGAAGGATATCCAACTCAGCCACTGAAGCAGACAAAGAAGCCTGTGACCATCATCCCTTGGAGAAAAATTGTGATGACAGTGGAGGATTGAAAACCTTGAATATTCAATTTGAGATGAGTTTGCCTATGGCTGCTTGGCTTGAGAAAATTCAAAGGGATGCAGTTTTACCTCCAGTGGCTCAGTTTAAGCTACCTCAGTTTTCCTCGAGCATCAAGAAACTTGTTCTCCTGACTGGTGCTTTAAAACCTATTATTGATTTACTGAGTTCACCTTGTTTGGTAAGCCAAAGAAAAGCTGCTCTATTACTTGGTCAGTTAATTACTGCTGATTTAGATTGCAAGGCACACATTGTTCAAAGGAGTGCGATACAACCATTAATTAAGAGCTTAGCTTTGGCAATTGGGAGGTTGGCACAAGACACACATAACCAAGCTGACATTGCTCATAATGGTCGCGTAGTGCCTCTACTCAAGTTACTTCATTCAAAAAATGAATCTCTGCAACACAATGCTGCATTTGCTCTATATGGTCTTGCAGATAAGGAGGACAACATTGTAGCTCTTATAAAATTTGGAATTGTTCAGAAATTTGAAGATGGAGAATTCCTTGTTCAACAAACTAAGGATTGTGTTGAAAAGACATTGAAAAGATTAGAGGGGAAGATTTGTGGACGAGTATCGAACAATCTATTATATCTGATGCGGGTTACTGACGAGGCCGTTCAAAGTCGAGTGGCTTTGGCTTTTGCTCATCTTTGTAAGCCTGGTGGTTGTCATGTCATTTTCAGTGAACATAAAGCAATGAAGCTGCTCTTGGTGCTTCTTGAGTATAAAAGCCTGAAAACCCTGAAGCTGCAACATGATGGTTCATTGGCCTTGCAAAAAGTGGCTACAAAAGCCACTCCACTCTCTCTTGATGTGATTGCGGAATCTCTCACGGTGGTAGCCCAAGCTTTGTGCACTGGACTACATATAATTTTGGCTTGCACGTTTTATCAGCATTGTTCTATGGTTGTGGAAGCTTCTATAATATTGCGGTATTCTTCTCTTCTACATTCTTCATTGGATTGTGTTGACTTCAGGTCTGCAATGCTTAATTTTATTCATTATTGTGTTTGCCTTGTTCATGCACATGAACATGCACTAGACTATTTATTCATGACCTATACTGTACATACTCTCTCACTCCCTGTGGCTACAATGTTTATCAAAGATGTTACTGGTGGTAACCTCTATCTATTTGAAGTGGCCGTACTCCACTTCCTTTGCCAAACTAAAGCTAGCTGCCACCCAAGGAGCTTTATTGTTGATGAATTTTTTGACTTTCTGAAAAGCAATTCAAAATTATCTTTTGTGAGGTACACTTGTGATGCACTTCTTTCAAGTGATAATTGTGTAGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010556 GO:0010558 GO:0010605 GO:0016020 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0034645 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090329 GO:0097305 GO:1900140 GO:1901360 GO:1901576 GO:1901700 GO:2000026 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

568

Amino Acids

62.77

Weight (kDa)

8.02

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016995)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0488471 RchiOBHm_Chr5g0027461 RchiOBHm_Chr6g0244361 RchiOBHm_Chr7g0200771
rosa_multiflora	Rmu_co8359501.1_g000001 Rmu_sc0004533.1_g000001 Rmu_sc0006898.1_g000005 Rmu_sc0032734.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027710 Rroxscaffold_1G00074240
rosa_samantha	Rh5BG270700 Rh6AG023200 Rh7CG467100
rosa_wichuraiana	Rw3G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	45, 866
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccII	CGCG	1 cut(s)	756
AciI	CCGC	5 cut(s)	14, 191, 1003, 1226, 1336
AcoI	YGGCCR	2 cut(s)	149, 1548
AcsI	RAATTY	7 cut(s)	50, 253, 447, 869, 887, 902, 1613
AcuI	CTGAAG	3 cut(s)	345, 1169, 1363
AfaI	GTAC	4 cut(s)	224, 1473, 1554, 1661
AfiI	CCNNNNNNNGG	3 cut(s)	239, 280, 295
AhdI	GACNNNNNGTC	1 cut(s)	1381
AjnI	CCWGG	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	1097, 1129
Alw21I	GWGCWC	1 cut(s)	1262
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	1258
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	4 cut(s)	149, 1017, 1173, 1548
ApaLI	GTGCAC	1 cut(s)	1258
ApeKI	GCWGC	7 cut(s)	172, 431, 596, 812, 1108, 1153, 1584
ApoI	RAATTY	7 cut(s)	50, 253, 447, 869, 887, 902, 1613
AseI	ATTAAT	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	84, 561
AsuNHI	GCTAGC	1 cut(s)	1580
AvaI	CYCGRG	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	1262
BaeI	ACNNNNGTAYC	2 cut(s)	1651, 1684
BalI	TGGCCA	1 cut(s)	151
BarI	GAAGNNNNNNTAC	2 cut(s)	1536, 1568
Bbv12I	GWGCWC	1 cut(s)	1262
BbvI	GCAGC	7 cut(s)	184, 418, 583, 799, 1095, 1140, 1571
BccI	CCATC	5 cut(s)	135, 191, 357, 890, 1157
BceAI	ACGGC	2 cut(s)	1004, 1535
BciT130I	CCWGG	1 cut(s)	1065
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	213, 1445, 1581
BisI	GCNGC	7 cut(s)	173, 432, 597, 813, 1109, 1154, 1585
BlpI	GCTNAGC	1 cut(s)	688
BlsI	GCNGC	7 cut(s)	174, 433, 598, 814, 1110, 1155, 1586
Bme1390I	CCNGG	1 cut(s)	1065
BmeRI	GACNNNNNGTC	1 cut(s)	1381
BmeT110I	CYCGRG	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	1065
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	4 cut(s)	448, 519, 990, 1660
BmtI	GCTAGC	1 cut(s)	1584
BmuI	ACTGGG	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	688
BpuEI	CTTGAG	4 cut(s)	90, 461, 755, 1145
BsaJI	CCNNGG	3 cut(s)	294, 357, 1592
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 280, 295
Bse1I	ACTGG	6 cut(s)	120, 275, 473, 538, 1267, 1525
Bse3DI	GCAATG	3 cut(s)	738, 1107, 1395
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	3 cut(s)	294, 357, 1592
BseGI	GGATG	2 cut(s)	352, 463
BseLI	CCNNNNNNNGG	3 cut(s)	239, 280, 295
BseMI	GCAATG	3 cut(s)	738, 1107, 1395
BseMII	CTCAG	4 cut(s)	330, 494, 509, 554
BseNI	ACTGG	6 cut(s)	120, 275, 473, 538, 1267, 1525
BseSI	GKGCMC	1 cut(s)	1262
BseXI	GCAGC	7 cut(s)	184, 418, 583, 799, 1095, 1140, 1571
Bsh1236I	CGCG	1 cut(s)	756
BshFI	GGCC	4 cut(s)	151, 1019, 1175, 1550
BsiHKAI	GWGCWC	1 cut(s)	1262
BsiHKCI	CYCGRG	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	239, 280, 295
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	4 cut(s)	151, 1019, 1175, 1550
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	1262
Bsp1407I	TGTACA	1 cut(s)	1471
Bsp1720I	GCTNAGC	1 cut(s)	688
BspACI	CCGC	5 cut(s)	14, 191, 1003, 1226, 1336
BspANI	GGCC	4 cut(s)	151, 1019, 1175, 1550
BspCNI	CTCAG	4 cut(s)	329, 493, 508, 555
BspFNI	CGCG	1 cut(s)	756
BspHI	TCATGA	1 cut(s)	1458
BspOI	GCTAGC	1 cut(s)	1584
BsrDI	GCAATG	3 cut(s)	738, 1107, 1395
BsrGI	TGTACA	1 cut(s)	1471
BsrI	ACTGG	6 cut(s)	120, 275, 473, 538, 1267, 1525
BssECI	CCNNGG	3 cut(s)	294, 357, 1592
BssT1I	CCWWGG	2 cut(s)	357, 1592
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	4 cut(s)	295, 380, 1240, 1471
Bst6I	CTCTTC	2 cut(s)	213, 1353
BstAUI	TGTACA	1 cut(s)	1471
BstC8I	GCNNGC	3 cut(s)	37, 1285, 1582
BstDEI	CTNAG	6 cut(s)	316, 480, 495, 563, 688, 921
BstDSI	CCRYGG	1 cut(s)	294
BstEII	GGTNACC	1 cut(s)	1526
BstF5I	GGATG	2 cut(s)	352, 463
BstFNI	CGCG	1 cut(s)	756
BstMAI	GTCTC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	5 cut(s)	326, 740, 818, 1117, 1196
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	1 cut(s)	1442
BstPI	GGTNACC	1 cut(s)	1526
BstSCI	CCNGG	1 cut(s)	1063
BstSLI	GKGCMC	1 cut(s)	1262
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	7 cut(s)	184, 418, 583, 799, 1095, 1140, 1571
BsuRI	GGCC	4 cut(s)	151, 1019, 1175, 1550
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	352, 463
BtsIMutI	CAGTG	5 cut(s)	321, 385, 480, 1093, 1260
Cac8I	GCNNGC	3 cut(s)	37, 1285, 1582
CaiI	CAGNNNCTG	1 cut(s)	323
CciI	TCATGA	1 cut(s)	1458
Csp6I	GTAC	4 cut(s)	223, 1472, 1553, 1660
CspCI	CAANNNNNGTGG	2 cut(s)	1547, 1582
CviAII	CATG	8 cut(s)	161, 187, 1076, 1160, 1427, 1433, 1439, 1459
CviQI	GTAC	4 cut(s)	223, 1472, 1553, 1660
DdeI	CTNAG	6 cut(s)	316, 480, 495, 563, 688, 921
DraI	TTTAAA	1 cut(s)	543
DriI	GACNNNNNGTC	1 cut(s)	1381
EaeI	YGGCCR	2 cut(s)	149, 1548
Eam1104I	CTCTTC	2 cut(s)	213, 1353
Eam1105I	GACNNNNNGTC	1 cut(s)	1381
EarI	CTCTTC	2 cut(s)	213, 1353
Eco130I	CCWWGG	2 cut(s)	357, 1592
Eco32I	GATATC	1 cut(s)	309
Eco57I	CTGAAG	3 cut(s)	345, 1169, 1363
Eco88I	CYCGRG	1 cut(s)	505
Eco91I	GGTNACC	1 cut(s)	1526
EcoO65I	GGTNACC	1 cut(s)	1526
EcoRI	GAATTC	2 cut(s)	253, 902
EcoRII	CCWGG	1 cut(s)	1063
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	357, 1592
ErhI	CCWWGG	2 cut(s)	357, 1592
FaeI	CATG	8 cut(s)	164, 190, 1079, 1163, 1430, 1436, 1442, 1462
FalI	AAGNNNNNCTT	2 cut(s)	1097, 1129
FatI	CATG	8 cut(s)	160, 186, 1075, 1159, 1426, 1432, 1438, 1458
FauI	CCCGC	1 cut(s)	996
Fnu4HI	GCNGC	7 cut(s)	173, 432, 597, 813, 1109, 1154, 1585
FokI	GGATG	2 cut(s)	339, 470
Fsp4HI	GCNGC	7 cut(s)	173, 432, 597, 813, 1109, 1154, 1585
FspBI	CTAG	3 cut(s)	213, 1445, 1581
GluI	GCNGC	7 cut(s)	173, 432, 597, 813, 1109, 1154, 1585
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	4 cut(s)	151, 1019, 1175, 1550
Hin1II	CATG	8 cut(s)	164, 190, 1079, 1163, 1430, 1436, 1442, 1462
HincII	GTYRAC	1 cut(s)	1375
HindII	GTYRAC	1 cut(s)	1375
HindIII	AAGCTT	2 cut(s)	1251, 1320
HinfI	GANTC	3 cut(s)	179, 794, 1229
HphI	GGTGA	2 cut(s)	84, 561
Hpy166II	GTNNAC	6 cut(s)	569, 971, 1091, 1260, 1375, 1662
Hpy188I	TCNGA	4 cut(s)	132, 885, 999, 1629
Hpy188III	TCNNGA	6 cut(s)	289, 514, 529, 1124, 1214, 1459
Hpy8I	GTNNAC	6 cut(s)	569, 971, 1091, 1260, 1375, 1662
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	4 cut(s)	295, 380, 1240, 1471
HpyCH4IV	ACGT	1 cut(s)	1289
HpyF10VI	GCNNNNNNNGC	5 cut(s)	326, 740, 818, 1117, 1196
HpyF3I	CTNAG	6 cut(s)	316, 480, 495, 563, 688, 921
HpySE526I	ACGT	1 cut(s)	1289
Hsp92II	CATG	8 cut(s)	164, 190, 1079, 1163, 1430, 1436, 1442, 1462
LmnI	GCTCC	2 cut(s)	242, 1596
Lsp1109I	GCAGC	7 cut(s)	184, 418, 583, 799, 1095, 1140, 1571
LweI	GCATC	4 cut(s)	448, 519, 990, 1660
MaeI	CTAG	3 cut(s)	213, 1445, 1581
MaeII	ACGT	1 cut(s)	1289
MaeIII	GTNAC	5 cut(s)	344, 774, 1006, 1516, 1526
MboII	GAAGA	7 cut(s)	79, 230, 905, 973, 1335, 1340, 1350
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	1 cut(s)	1262
MlsI	TGGCCA	1 cut(s)	151
MluNI	TGGCCA	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	6 cut(s)	486, 542, 617, 677, 681, 1395
MslI	CAYNNNNRTG	3 cut(s)	1410, 1431, 1437
Msp20I	TGGCCA	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	1065
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	1065
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	5 cut(s)	326, 740, 818, 1117, 1196
NheI	GCTAGC	1 cut(s)	1580
NlaIII	CATG	8 cut(s)	164, 190, 1079, 1163, 1430, 1436, 1442, 1462
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	1442
PacI	TTAATTAA	1 cut(s)	681
PaeR7I	CTCGAG	1 cut(s)	505
PagI	TCATGA	1 cut(s)	1458
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	179, 794, 1229
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	7 cut(s)	174, 433, 598, 814, 1110, 1155, 1586
PshBI	ATTAAT	1 cut(s)	677
PsiI	TTATAA	2 cut(s)	45, 866
Psp6I	CCWGG	1 cut(s)	1063
PspEI	GGTNACC	1 cut(s)	1526
PspGI	CCWGG	1 cut(s)	1063
PspXI	VCTCGAGB	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	323
RsaI	GTAC	4 cut(s)	224, 1473, 1554, 1661
RsaNI	GTAC	4 cut(s)	223, 1472, 1553, 1660
RseI	CAYNNNNRTG	3 cut(s)	1410, 1431, 1437
SaqAI	TTAA	6 cut(s)	486, 542, 617, 677, 681, 1395
SatI	GCNGC	7 cut(s)	173, 432, 597, 813, 1109, 1154, 1585
ScrFI	CCNGG	1 cut(s)	1065
SduI	GDGCHC	1 cut(s)	1262
SfaNI	GCATC	4 cut(s)	448, 519, 990, 1660
Sfr274I	CTCGAG	1 cut(s)	505
SlaI	CTCGAG	1 cut(s)	505
SmiMI	CAYNNNNRTG	3 cut(s)	1410, 1431, 1437
SmlI	CTYRAG	5 cut(s)	105, 440, 505, 770, 1124
SmoI	CTYRAG	5 cut(s)	105, 440, 505, 770, 1124
SsiI	CCGC	5 cut(s)	14, 191, 1003, 1226, 1336
SspI	AATATT	2 cut(s)	403, 1332
SspMI	CTAG	3 cut(s)	213, 1445, 1581
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	2 cut(s)	357, 1592
TaaI	ACNGT	4 cut(s)	295, 380, 1240, 1471
TaiI	ACGT	1 cut(s)	1292
TaqI	TCGA	3 cut(s)	506, 980, 1030
TatI	WGTACW	1 cut(s)	1471
TfiI	GAWTC	3 cut(s)	179, 794, 1229
Tru1I	TTAA	6 cut(s)	486, 542, 617, 677, 681, 1395
Tru9I	TTAA	6 cut(s)	486, 542, 617, 677, 681, 1395
TscAI	CASTG	5 cut(s)	328, 385, 480, 1093, 1267
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	7 cut(s)	172, 431, 596, 812, 1108, 1153, 1584
Tsp45I	GTSAC	1 cut(s)	344
TspRI	CASTG	5 cut(s)	328, 385, 480, 1093, 1267
Van91I	CCANNNNNTGG	1 cut(s)	295
VneI	GTGCAC	1 cut(s)	1258
VspI	ATTAAT	1 cut(s)	677
XapI	RAATTY	7 cut(s)	50, 253, 447, 869, 887, 902, 1613
XceI	RCATGY	1 cut(s)	1442
XhoI	CTCGAG	1 cut(s)	505
XspI	CTAG	3 cut(s)	213, 1445, 1581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.