Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009572

Physical Location & Seq

Genomic Coordinates Forward (+)

11861982 .. 11873425

Gene Structure 11444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3414 bp

ATGTATTGGCTGGCCACTCGAAACGGCGTCGTCTGCCGTCCTCTGGCTCTTCTTCTCCGCTCCCCTCCTCGTAAATGCAGCTCCGTCAGCCCCTCTCCGATGCTCGTTGGACAGTTTCGGAGGATTCATTGTTTCAAAGACCCAAAGGTTTTAGGAGGAAGCAGAAAAACTACCAAGAAACTTAATGCCTTGAATGATTTCATTGATGAGAGAGCTGTCTCTAACATATTGTGGTGGAAGGAGAGGATGCAGTTGTGCAGGAAGCCTTCAACTGTCCAGCTGGTGAAAAGGCTTGATTATTCTAATTTGCTAGGCTTGGATGTCAACTTAAAAAATGGGAGTCTGAAAGAGGGAACACTCAATTCAGAGATCTTGCAGTTCAAGTCAAAATTTCCACGTGAAGTTTTGCTCTGCAGAGTTGGTGACTTTTATGAAGCCTTAGGAATAGATGCTTGTGTATTGGTTGAATATGCAGGTTTGAATCCTTTTGGGGGTCTGCGTTCAGATAGTATCCCAAGAGCTGGTTGCCCAGTTGTGAATCTTCGACAAACTTTGGATGATCTGACACGGAATGGGTTTTCAGTGTGCATAGTGGAAGAAGTTCAGGGTCCAACACAAGCGCGTTCCCGTAAAGGTCGTTTTATATCTGGGCATGCACATCCCGGTAGTCCTTACGTTTTTGGTCTTGTTGGGGTCGATCACGATCTTGACTTTCCAGAACCAATGCCTGTAGTTGGAATATCTCGTTCTGCTAGAGGTTATTGCATCAACTTTGTATTGGAAACCATGAAAACTTATTCATCAGAGGATGGTTTGACTGAAGAAGCCTTGGTTGCTAAGCTCCGTACTTGTCGGTACCATCATTTGTTCCTGCATACATCATTGAGGAACAATTTCTCAGGCACTTGTCGTTGGGGTGAATTTGGTGAGGGAGGCCTTCTATGGGGAGAATGTAGCGGTAGGCATTTTGAATGGTTTGAAGGCAATCCTGTGTCTGAGCTTTTGTCTAAGGTTAAAGATTTATATGGTCTTGATGATGAAGTTACATTTAGGAATGTCACTGTGTCTTCAGAAAACAGACCCCAGCCTCTATCCCTAGGAACAGCGACTCAAATTGGTGCCATACCAACTGAGGGAATACCTTGTTTGTTGAAGGTGTTGCTTCCTTCAAACTGCTCAGGCCTACCTGTACTGTATGTTAGAGATCTTCTTCTTAATCCTCCTCCTTATGATATATCTTCCACAATTCAAGCAACATGCAGACTTATGAGCAGCATTACTTGCTCGATTCCTGAGTTTACTTGTGTTTCACCTGCAAAGCTGGTGAAACTTCTGGAACTCAGGGAGGCCAATCATATTGAGTTTTGCAGAATTAAAAATGTTCTCGATGAAATACTGCACATGCATAAACATCCTGAGCTGGGTAAGATTCTGAAGTTGTTGATGGATCCTACATGGGTGGCGACTGGGTTGAAAATTGACTTCGAGACATTAGTTAATGAATGTGAATGCGCTTCTGATAGAATTGGTGAAATGATCTCCCTAGATGGTGAACATGATCAAAACCTTAGTTCCTTTCCTGTTGTTCCTAGTGATTTTTTTGAGGATATGGAGTGTTCTTGGAAAGGTCGTATAAAGAGAATCCATATAGAGGAGGCCTTTGCAGAAGTGGAAAAGGCTGCTGAGGCGTTATCCTTAGCAGTCACTGAAGATTTCATGCCCATCGTATCTAGAATAAAGGCTACCACAGCTCCACTTGGAGGCCCGAAGGGAGAAATATTATATGCGCGGGAGCATGAAGCTGTTTGGTTTAAAGGAAAACGATTTGCTCCGGCTGTTTGGGCTGGCACCCCTGGGGAAGAACAAATTAAACAGCTTAAACCTGCTTTAGATTCAAAAGGTAGAAAGGTCGGAGAAGAGTGGTTTACGACAATGAAAGTGGAGGATGCTTTAACAAGGTACCATGAAGCAGGTGCGAAAGCAAAAACAAGGGTTTTGGAGTTGTTGAGAGAACTTTCTTCTGACTTACAAGCAAAGATCAATGTCCTTGTCTTTGCCTCAATGCTTCTAGTTATTGCAAAGGCATTATTTGCTCATGTGAGTGAAGGGAGAAGAAGGAAATGGGTTTTTCCTGCCCTTGGAGAGTCCAGTTGGTCTAAGAATGTGAAACCATTGACGGGAGAAAATAGAATGGAGATAGTTGGTCTATCACCATACTGGTTGGACGTAGCAGAAGGCAGTGCTGTAAATAACACTGTGGATATGCAATCGTTGTTCCTTTTAACTGGACCCAATGGTGGTGGTAAATCAAGTCTGCTACGATCAATTTGTGCCGCTGCATTACTTGGAGTTTGTGGGTTTATGGTGCCTGCAGAGTCTGCCTCGATTCCTCATTTTGACTCTATTATGCTTCACATGAAATCTTATGACAGCCCCGCTGATGGGAAAAGTTCCTTTCAGGTGGAAATGGCAGAAATTCGGTCTATTGTTTCTGGAGCCACTAAAAGAAGCCTTGTTCTTGTAGATGAAATTTGTCGAGGAACAGAAACAGCTAAGGGAACATGTATTGCTGGTAGTATTGTTGAAACTCTTGATGCAATAGGATGTCTTGGTATCATATCTACTCACTTGCATGGGATATTTAGCTTGCCTCTTAATACAAAGAATACGGTGCATAAAGCAATGGGAACTGTATATGTTGACAGACAACCAAAACCAACCTGGAAATTGATGGACGGCATATGTAGAGAAAGCCTTGCATTTGAAACGGCTAAGAAGGAAGGAATTCCTGAAACAATAATTGAAAGAGCTGAAGGCCTGTACCATTCAGTTTATGCAAAGGAGGTGATTCGAGGAAAGATTGACCCAAAACTAGAAGAGTTCTGTTCCACAGGTTTTAATAATTTTGATAGGTCTCATCCTCAATCAAGTAGTGCTAGAGTTGAAGCTGTCGATGGGACAGGATCAGTGAACAATATGGAAGTCTTACAGAAGGAGGTTGAGAGTGCAATCACCTTGATTTGCCAAAAGAAGCTGATTGAGCTCGACAATAAGAAAACATCAGAACTTACTGATATACAGTGTGTTCCAATTCATGTCAGGGAACAGCCACCTCCATCAACCGTAGGTGCTTCATGTGTATATGTGATTTTCAGACCCGATAGGAAACTGTATGTTGGACAGACGGATGATTTGGAGGGTCGGGTGCGCACACATCGTTCAAAGGAAGGAATGCAAAAGGCAAATTTTCTTTATTTCACTGTCCCGGGGAAGAGCTTGGCTTGCCAATTAGAGACTCTTCTCATCAACCAGCTCCCTAATCAAGGCTTCCATCTCAGTAATGTGGCTGATGGTAAACATAGGAATTTTGGCACCTCCAACATTTCCTTGGAAGGTGTGACGGTTTGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

1137

Amino Acids

125.83

Weight (kDa)

7.29

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	125 - 215	8.6e-10	MutS domain I
MutS_V	PF00488	760 - 942	2.2e-40	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24320 AT3G24320
fragaria_vesca	FvH4_4g05000 FvH4_4g05000 FvH4_4g05000
malus_domestica	MD13G1223200.v1.1
prunus_persica	Prupe.1G050200_v2.0.a1
pyrus_communis	pycom13g19710
rosa_chinensis	RchiOBHm_Chr4g0395811
rosa_laevigata	RLG00000009591
rosa_multiflora	Rmu_sc0001103.1_g000036 Rmu_sc0008803.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340650
rosa_rugosa	Rorug03G0354100 Rorug03G0354200
rosa_samantha	Rh4AG062500 Rh4AG063500 Rh4AG067100 Rh4BG062200 Rh4CG068500 Rh4DG057100
rosa_wichuraiana	Rw4G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1321, 1961
Acc16I	TGCGCA	1 cut(s)	3209
Acc36I	ACCTGC	4 cut(s)	464, 1321, 1891, 1961
Acc65I	GGTACC	2 cut(s)	855, 1959
AccB1I	GGYRCC	6 cut(s)	855, 1118, 1847, 1959, 2365, 3371
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	2 cut(s)	622, 1789
AciI	CCGC	5 cut(s)	58, 957, 1789, 2334, 2436
AclWI	GGATC	3 cut(s)	1442, 1455, 2971
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	7 cut(s)	389, 920, 2475, 2529, 2784, 3244, 3364
AcuI	CTGAAG	5 cut(s)	840, 1053, 1454, 1728, 2832
AcvI	CACGTG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	5 cut(s)	847, 857, 1191, 1961, 2822
AflIII	ACRYGT	1 cut(s)	2561
AhdI	GACNNNNNGTC	1 cut(s)	3405
AjnI	CCWGG	2 cut(s)	1852, 2720
Alw21I	GWGCWC	1 cut(s)	3045
Alw26I	GTCTC	4 cut(s)	223, 1481, 2919, 3287
AlwI	GGATC	3 cut(s)	1442, 1455, 2971
AlwNI	CAGNNNCTG	2 cut(s)	1706, 2378
Ama87I	CYCGRG	1 cut(s)	3265
AoxI	GGCC	7 cut(s)	12, 934, 1180, 1347, 1656, 1762, 2815
ApeKI	GCWGC	4 cut(s)	78, 1272, 1679, 2336
ApoI	RAATTY	7 cut(s)	389, 920, 2475, 2529, 2784, 3244, 3364
ArsI	GACNNNNNNTTYG	2 cut(s)	3175, 3207
Asp700I	GAANNNNTTC	4 cut(s)	197, 600, 893, 2784
Asp718I	GGTACC	2 cut(s)	855, 1959
AspA2I	CCTAGG	1 cut(s)	1096
AspLEI	GCGC	4 cut(s)	622, 1514, 1789, 3210
AspS9I	GGNCC	3 cut(s)	608, 1763, 2288
AsuC2I	CCSGG	3 cut(s)	663, 3266, 3267
AvaI	CYCGRG	1 cut(s)	3265
AvaII	GGWCC	2 cut(s)	608, 2288
AvrII	CCTAGG	1 cut(s)	1096
AxyI	CCTNAGG	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	1447
BanI	GGYRCC	6 cut(s)	855, 1118, 1847, 1959, 2365, 3371
BanII	GRGCYC	1 cut(s)	3045
BbrPI	CACGTG	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	1059
Bbv12I	GWGCWC	1 cut(s)	3045
BbvCI	CCTCAGC	1 cut(s)	1683
BbvI	GCAGC	4 cut(s)	90, 1284, 1666, 2323
BceAI	ACGGC	4 cut(s)	21, 40, 2752, 2784
BciT130I	CCWGG	2 cut(s)	1854, 2722
BciVI	GTATCC	1 cut(s)	521
BclI	TGATCA	1 cut(s)	1558
BcnI	CCSGG	3 cut(s)	663, 3266, 3267
BcoDI	GTCTC	4 cut(s)	223, 1481, 2919, 3287
BfaI	CTAG	9 cut(s)	311, 753, 1097, 1544, 1590, 1731, 2069, 2873, 2937
BfmI	CTRYAG	3 cut(s)	412, 729, 2370
BfuAI	ACCTGC	4 cut(s)	464, 1321, 1891, 1961
BfuI	GTATCC	1 cut(s)	521
BglII	AGATCT	2 cut(s)	369, 1204
BisI	GCNGC	5 cut(s)	79, 1273, 1680, 2334, 2337
BlnI	CCTAGG	1 cut(s)	1096
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	5 cut(s)	80, 1274, 1681, 2335, 2338
Bme1390I	CCNGG	5 cut(s)	663, 1854, 2722, 3266, 3267
Bme18I	GGWCC	2 cut(s)	608, 2288
BmeRI	GACNNNNNGTC	1 cut(s)	3405
BmeT110I	CYCGRG	1 cut(s)	3265
BmgT120I	GGNCC	3 cut(s)	608, 1763, 2288
BmrFI	CCNGG	5 cut(s)	663, 1854, 2722, 3266, 3267
BmrI	ACTGGG	2 cut(s)	524, 1476
BmsI	GCATC	6 cut(s)	90, 237, 439, 774, 1936, 2584
BmuI	ACTGGG	2 cut(s)	524, 1476
BpiI	GAAGAC	1 cut(s)	1059
BplI	GAGNNNNNCTC	2 cut(s)	2366, 2398
BpmI	CTGGAG	1 cut(s)	2514
Bpu10I	CCTNAGC	5 cut(s)	1177, 1416, 1683, 1696, 2553
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuMI	CCSGG	3 cut(s)	663, 3266, 3267
BsaAI	YACGTR	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	2919
BsaJI	CCNNGG	8 cut(s)	828, 1096, 1852, 1853, 2137, 3265, 3266, 3387
BsaXI	ACNNNNNCTCC	2 cut(s)	1735, 1765
Bse1I	ACTGG	5 cut(s)	530, 1471, 2148, 2222, 2290
Bse21I	CCTNAGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	2688
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	1854, 2722
BseDI	CCNNGG	8 cut(s)	828, 1096, 1852, 1853, 2137, 3265, 3266, 3387
BseJI	GATNNNNATC	1 cut(s)	702
BseMI	GCAATG	1 cut(s)	2688
BseMII	CTCAG	9 cut(s)	912, 987, 1122, 1191, 1284, 1354, 1407, 1674, 3349
BseNI	ACTGG	5 cut(s)	530, 1471, 2148, 2222, 2290
BseRI	GAGGAG	3 cut(s)	57, 1212, 1667
BseXI	GCAGC	4 cut(s)	90, 1284, 1666, 2323
BseYI	CCCAGC	2 cut(s)	1083, 1420
BsgI	GTGCAG	2 cut(s)	277, 1382
Bsh1236I	CGCG	2 cut(s)	622, 1789
BshFI	GGCC	7 cut(s)	14, 936, 1182, 1349, 1658, 1764, 2817
BshNI	GGYRCC	6 cut(s)	855, 1118, 1847, 1959, 2365, 3371
BsiHKAI	GWGCWC	1 cut(s)	3045
BsiHKCI	CYCGRG	1 cut(s)	3265
BsiSI	CCGG	3 cut(s)	663, 1832, 3266
BslFI	GGGAC	2 cut(s)	2971, 3248
BsmAI	GTCTC	4 cut(s)	223, 1481, 2919, 3287
BsmFI	GGGAC	2 cut(s)	2971, 3248
BsmI	GAATGC	2 cut(s)	1514, 3237
BsnI	GGCC	7 cut(s)	14, 936, 1182, 1349, 1658, 1764, 2817
Bso31I	GGTCTC	1 cut(s)	2919
BsoBI	CYCGRG	1 cut(s)	3265
Bsp1286I	GDGCHC	1 cut(s)	3045
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	5 cut(s)	58, 957, 1789, 2334, 2436
BspANI	GGCC	7 cut(s)	14, 936, 1182, 1349, 1658, 1764, 2817
BspCNI	CTCAG	9 cut(s)	911, 988, 1123, 1190, 1285, 1353, 1408, 1675, 3348
BspFNI	CGCG	2 cut(s)	622, 1789
BspMAI	CTGCAG	2 cut(s)	416, 2374
BspMI	ACCTGC	4 cut(s)	464, 1321, 1891, 1961
BspPI	GGATC	3 cut(s)	1442, 1455, 2971
BspQI	GCTCTTC	2 cut(s)	54, 3266
BspT107I	GGYRCC	6 cut(s)	855, 1118, 1847, 1959, 2365, 3371
BspTNI	GGTCTC	1 cut(s)	2919
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	2688
BsrI	ACTGG	5 cut(s)	530, 1471, 2148, 2222, 2290
BssECI	CCNNGG	8 cut(s)	828, 1096, 1852, 1853, 2137, 3265, 3266, 3387
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	4 cut(s)	828, 1096, 2137, 3387
Bst2UI	CCWGG	2 cut(s)	1854, 2722
Bst6I	CTCTTC	5 cut(s)	54, 1911, 2871, 3266, 3303
BstACI	GRCGYC	1 cut(s)	27
BstAPI	GCANNNNNTGC	3 cut(s)	1281, 2090, 2378
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	6 cut(s)	12, 654, 1846, 2370, 2648, 3283
BstENI	CCTNNNNNAGG	1 cut(s)	3321
BstFNI	CGCG	2 cut(s)	622, 1789
BstHHI	GCGC	4 cut(s)	622, 1514, 1789, 3210
BstMAI	GTCTC	4 cut(s)	223, 1481, 2919, 3287
BstNI	CCWGG	2 cut(s)	1854, 2722
BstNSI	RCATGY	4 cut(s)	656, 1260, 1405, 2565
BstSCI	CCNGG	5 cut(s)	661, 1852, 2720, 3264, 3265
BstSFI	CTRYAG	3 cut(s)	412, 729, 2370
BstUI	CGCG	2 cut(s)	622, 1789
BstV1I	GCAGC	4 cut(s)	90, 1284, 1666, 2323
BstV2I	GAAGAC	1 cut(s)	1059
BstX2I	RGATCY	3 cut(s)	369, 1204, 1447
BstYI	RGATCY	3 cut(s)	369, 1204, 1447
Bsu36I	CCTNAGG	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	7 cut(s)	14, 936, 1182, 1349, 1658, 1764, 2817
BtsI	GCAGTG	1 cut(s)	2245
BtsIMutI	CAGTG	8 cut(s)	588, 1059, 1704, 2245, 2253, 2973, 3086, 3258
BveI	ACCTGC	4 cut(s)	464, 1321, 1891, 1961
Cac8I	GCNNGC	6 cut(s)	12, 654, 1846, 2370, 2648, 3283
CaiI	CAGNNNCTG	2 cut(s)	1706, 2378
CfoI	GCGC	4 cut(s)	622, 1514, 1789, 3210
Cfr13I	GGNCC	3 cut(s)	608, 1763, 2288
Cfr9I	CCCGGG	1 cut(s)	3265
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	5 cut(s)	846, 856, 1190, 1960, 2821
CspCI	CAANNNNNGTGG	4 cut(s)	1920, 1955, 2281, 2316
CviQI	GTAC	5 cut(s)	846, 856, 1190, 1960, 2821
DraI	TTTAAA	1 cut(s)	1813
DriI	GACNNNNNGTC	1 cut(s)	3405
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	5 cut(s)	54, 1911, 2871, 3266, 3303
Eam1105I	GACNNNNNGTC	1 cut(s)	3405
EarI	CTCTTC	5 cut(s)	54, 1911, 2871, 3266, 3303
Ecl136II	GAGCTC	1 cut(s)	3043
Eco130I	CCWWGG	4 cut(s)	828, 1096, 2137, 3387
Eco147I	AGGCCT	4 cut(s)	936, 1182, 1658, 2817
Eco24I	GRGCYC	1 cut(s)	3045
Eco31I	GGTCTC	1 cut(s)	2919
Eco47I	GGWCC	2 cut(s)	608, 2288
Eco53kI	GAGCTC	1 cut(s)	3043
Eco57I	CTGAAG	5 cut(s)	840, 1053, 1454, 1728, 2832
Eco72I	CACGTG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	3265
EcoICRI	GAGCTC	1 cut(s)	3043
EcoNI	CCTNNNNNAGG	1 cut(s)	3321
EcoRI	GAATTC	1 cut(s)	2784
EcoRII	CCWGG	2 cut(s)	1852, 2720
EcoT14I	CCWWGG	4 cut(s)	828, 1096, 2137, 3387
EcoT22I	ATGCAT	1 cut(s)	1407
EcoT38I	GRGCYC	1 cut(s)	3045
ErhI	CCWWGG	4 cut(s)	828, 1096, 2137, 3387
FaqI	GGGAC	2 cut(s)	2971, 3248
FauI	CCCGC	2 cut(s)	1782, 2443
FauNDI	CATATG	1 cut(s)	2741
FbaI	TGATCA	1 cut(s)	1558
Fnu4HI	GCNGC	5 cut(s)	79, 1273, 1680, 2334, 2337
FriOI	GRGCYC	1 cut(s)	3045
Fsp4HI	GCNGC	5 cut(s)	79, 1273, 1680, 2334, 2337
FspAI	RTGCGCAY	1 cut(s)	3209
FspBI	CTAG	9 cut(s)	311, 753, 1097, 1544, 1590, 1731, 2069, 2873, 2937
FspI	TGCGCA	1 cut(s)	3209
GlaI	GCGC	4 cut(s)	621, 1513, 1788, 3209
GluI	GCNGC	5 cut(s)	79, 1273, 1680, 2334, 2337
GsaI	CCCAGC	2 cut(s)	1087, 1424
GsuI	CTGGAG	1 cut(s)	2514
HaeIII	GGCC	7 cut(s)	14, 936, 1182, 1349, 1658, 1764, 2817
HapII	CCGG	3 cut(s)	663, 1832, 3266
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	4 cut(s)	622, 1514, 1789, 3210
Hin1I	GRCGYC	1 cut(s)	27
Hin6I	GCGC	4 cut(s)	620, 1512, 1787, 3208
HinP1I	GCGC	4 cut(s)	620, 1512, 1787, 3208
HincII	GTYRAC	2 cut(s)	325, 2701
HindII	GTYRAC	2 cut(s)	325, 2701
HpaII	CCGG	3 cut(s)	663, 1832, 3266
Hpy166II	GTNNAC	7 cut(s)	325, 1299, 1553, 1926, 2701, 2971, 3356
Hpy8I	GTNNAC	7 cut(s)	325, 1299, 1553, 1926, 2701, 2971, 3356
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	397, 675, 2226
HpySE526I	ACGT	3 cut(s)	397, 675, 2226
Hsp92I	GRCGYC	1 cut(s)	27
HspAI	GCGC	4 cut(s)	620, 1512, 1787, 3208
KpnI	GGTACC	2 cut(s)	859, 1963
Ksp22I	TGATCA	1 cut(s)	1558
LguI	GCTCTTC	2 cut(s)	54, 3266
LmnI	GCTCC	8 cut(s)	65, 86, 846, 1756, 1792, 1834, 2495, 3318
Lsp1109I	GCAGC	4 cut(s)	90, 1284, 1666, 2323
LweI	GCATC	6 cut(s)	90, 237, 439, 774, 1936, 2584
MaeI	CTAG	9 cut(s)	311, 753, 1097, 1544, 1590, 1731, 2069, 2873, 2937
MaeII	ACGT	3 cut(s)	397, 675, 2226
MaeIII	GTNAC	5 cut(s)	422, 1042, 1057, 1702, 3397
MbiI	CCGCTC	1 cut(s)	60
MflI	RGATCY	3 cut(s)	369, 1204, 1447
MhlI	GDGCHC	1 cut(s)	3045
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	6 cut(s)	349, 1102, 2153, 2384, 2393, 3289
MmeI	TCCRAC	7 cut(s)	88, 635, 715, 1891, 2202, 3157, 3402
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	1407
MroXI	GAANNNNTTC	4 cut(s)	197, 600, 893, 2784
MscI	TGGCCA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	2100, 2631
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	3 cut(s)	280, 2336, 2438
MspI	CCGG	3 cut(s)	663, 1832, 3266
MspR9I	CCNGG	5 cut(s)	663, 1854, 2722, 3266, 3267
Mva1269I	GAATGC	2 cut(s)	1514, 3237
MvaI	CCWGG	2 cut(s)	1854, 2722
MvnI	CGCG	2 cut(s)	622, 1789
NciI	CCSGG	3 cut(s)	663, 3266, 3267
NdeI	CATATG	1 cut(s)	2741
NmuCI	GTSAC	4 cut(s)	422, 1057, 1702, 3397
NsbI	TGCGCA	1 cut(s)	3209
NsiI	ATGCAT	1 cut(s)	1407
NspI	RCATGY	4 cut(s)	656, 1260, 1405, 2565
PaeI	GCATGC	1 cut(s)	656
PaqCI	CACCTGC	2 cut(s)	1321, 1961
PasI	CCCWGGG	1 cut(s)	1853
PceI	AGGCCT	4 cut(s)	936, 1182, 1658, 2817
PciI	ACATGT	1 cut(s)	2561
PciSI	GCTCTTC	2 cut(s)	54, 3266
PctI	GAATGC	2 cut(s)	1514, 3237
PdmI	GAANNNNTTC	4 cut(s)	197, 600, 893, 2784
PfeI	GAWTC	9 cut(s)	124, 481, 538, 1288, 1429, 1641, 1892, 2386, 2848
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	80, 1274, 1681, 2335, 2338
PleI	GAGTC	6 cut(s)	348, 1102, 2152, 2383, 2393, 3289
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
PpsI	GAGTC	6 cut(s)	348, 1102, 2152, 2383, 2393, 3289
Ppu21I	YACGTR	1 cut(s)	398
PscI	ACATGT	1 cut(s)	2561
Psp124BI	GAGCTC	1 cut(s)	3045
Psp6I	CCWGG	2 cut(s)	1852, 2720
PspCI	CACGTG	1 cut(s)	398
PspFI	CCCAGC	2 cut(s)	1083, 1420
PspGI	CCWGG	2 cut(s)	1852, 2720
PspPI	GGNCC	3 cut(s)	608, 1763, 2288
PstI	CTGCAG	2 cut(s)	416, 2374
PstNI	CAGNNNCTG	2 cut(s)	1706, 2378
PsuI	RGATCY	3 cut(s)	369, 1204, 1447
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	5 cut(s)	847, 857, 1191, 1961, 2822
RsaNI	GTAC	5 cut(s)	846, 856, 1190, 1960, 2821
RseI	CAYNNNNRTG	2 cut(s)	2100, 2631
SacI	GAGCTC	1 cut(s)	3045
SapI	GCTCTTC	2 cut(s)	54, 3266
SatI	GCNGC	5 cut(s)	79, 1273, 1680, 2334, 2337
Sau96I	GGNCC	3 cut(s)	608, 1763, 2288
SchI	GAGTC	6 cut(s)	349, 1102, 2153, 2384, 2393, 3289
ScrFI	CCNGG	5 cut(s)	663, 1854, 2722, 3266, 3267
SduI	GDGCHC	1 cut(s)	3045
SfaNI	GCATC	6 cut(s)	90, 237, 439, 774, 1936, 2584
SfcI	CTRYAG	3 cut(s)	412, 729, 2370
SinI	GGWCC	2 cut(s)	608, 2288
SmaI	CCCGGG	1 cut(s)	3267
SmiMI	CAYNNNNRTG	2 cut(s)	2100, 2631
SphI	GCATGC	1 cut(s)	656
SseBI	AGGCCT	4 cut(s)	936, 1182, 1658, 2817
SsiI	CCGC	5 cut(s)	58, 957, 1789, 2334, 2436
SspI	AATATT	1 cut(s)	1779
SspMI	CTAG	9 cut(s)	311, 753, 1097, 1544, 1590, 1731, 2069, 2873, 2937
SstI	GAGCTC	1 cut(s)	3045
StuI	AGGCCT	4 cut(s)	936, 1182, 1658, 2817
StyD4I	CCNGG	5 cut(s)	661, 1852, 2720, 3264, 3265
StyI	CCWWGG	4 cut(s)	828, 1096, 2137, 3387
TaiI	ACGT	3 cut(s)	400, 678, 2229
TaqII	GACCGA	1 cut(s)	2469
TatI	WGTACW	1 cut(s)	1189
TauI	GCSGC	1 cut(s)	2336
TfiI	GAWTC	9 cut(s)	124, 481, 538, 1288, 1429, 1641, 1892, 2386, 2848
TscAI	CASTG	8 cut(s)	588, 1066, 1711, 2245, 2260, 2973, 3086, 3265
TseFI	GTSAC	4 cut(s)	422, 1057, 1702, 3397
TseI	GCWGC	4 cut(s)	78, 1272, 1679, 2336
Tsp45I	GTSAC	4 cut(s)	422, 1057, 1702, 3397
TspGWI	ACGGA	4 cut(s)	73, 583, 833, 3200
TspMI	CCCGGG	1 cut(s)	3265
TspRI	CASTG	8 cut(s)	588, 1066, 1711, 2245, 2260, 2973, 3086, 3265
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	608, 2288
XagI	CCTNNNNNAGG	1 cut(s)	3321
XapI	RAATTY	7 cut(s)	389, 920, 2475, 2529, 2784, 3244, 3364
XbaI	TCTAGA	1 cut(s)	1730
XceI	RCATGY	4 cut(s)	656, 1260, 1405, 2565
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2718, 3385
XmaI	CCCGGG	1 cut(s)	3265
XmaJI	CCTAGG	1 cut(s)	1096
XmnI	GAANNNNTTC	4 cut(s)	197, 600, 893, 2784
XspI	CTAG	9 cut(s)	311, 753, 1097, 1544, 1590, 1731, 2069, 2873, 2937
Zsp2I	ATGCAT	1 cut(s)	1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.