Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009572

Physical Location & Seq

Genomic Coordinates Forward (+)

9127550 .. 9139371

Gene Structure 11822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

ATGGGTTCTTGTGGACAGTTTCGGAGGATTCATTGTTTCAAAGACCAAAAGGTTTTACGAGGAAGCAGAAAAACTACCAAGAAACTTAATGCCTTGAATGATTTCCTGGATGAGAGAGCTGTTTCTAACATATTGTGGTGGAAGGAGAGGATGCAGTTGTGCAGGAAGCCTTCAACTGTCCAGCTGGTGAAAAGGCTTGATTATTCTAATTTGCTAGGCTTGGATGTCAACTTAAAAAATGGGAGTCTGAAAGAGGGAACACTCAATTCGGAGATCTTGCAGTTCAAGTCAAAGTTTCCACGTGAAGTTTTGCTCTGCAGAGTTGGTGACTTTTATGAAGCCTTAGGAATAGATGCTTGTGTATTGGTTGAATATGCAGGTTTGAATCCTTTTGGGGGTCTGCGTTCAGATAGTATCCCGAGAGCTGGTTGCCCAGTTGTGAATCTTCGACAAACTTTGGATGATCTGACACGGAATGGGTTTTCAGTGTGCATAGTGGAAGAAGTTCAGGGTCCAACACAAGCGCGTTCCCGTAAAGGTCGTTTTATATCTGGGCATGCACATCCCGGTAGTCCTTACGTTTTCGGACTTGTTGGGGTCGATCACGATCTTGACTTTCCAGAACCAATGCCTGTAGTTGGAATATCTCGTTCTGCTAGAGGTTATTGCATCAACTTTGTATTGGAAACCATGAAAACTTATTCATCAGAGGATGGTTTGACTGAAGAAGCCTTGGTTGCTAAGCTCCGTACTTGTCGGTACCATCATTTATTCCTGCATACATCATTGAGGAACAATTTCTCAGGCACTTGTCGTTGGGGTGAATTTGGTGAGGGAGGCCTTCTATGGGGAGAATGTAGCGGTAGGCATTTTGAATGGTTTGAAGGCAATCCTGTGTCTGAGCTTTTGTCAAAGGTTAGAGATTTATATGGTCTTGATAATGAAGTTACATTTAGGAATGTCACTGTATCTTCAGAAAACAGACCCCAGCCCCTATCCCTAGGAACAGCGACTCAAATTGGTGCCATACCAACTGAGGGAATACCTTGTTTATTGAAGGTGTTGCTTCCTTCAAACTGCTCAGGCCTACCTGTACTGTATGTTAGAGATCTTCTTCTTAATCCTCCTCCTTATGATATATCTTCCACAATTCAAGCAACATGCAGACTTATGAGCAGCATTACTTGCTCGATTCCTGAGTTCACTTGTGTTTCACCTGCAAAGCTGGTGAAACTTCTGGAACTCAGGGAGGCCAATCACATTGAGTTTTGCAGAATTAAAAATGTTCTCGATGAAATACTGCACATGCATAAAAATCCTGAGCTGGGTAAGATTCTGAAGTTGTTGATGGATCCTACATGGGTGGCGACTGGGTTGAAAATTGACTTTGAGACATTAGTAAATGAATGTGAATGCGCTTCTGATAGAATTGGTGAAATGATCTCCCTAGATGGTGAACATGATCAAAACCTTAGTTCCTTTCCTGTTGTTCCTAGCGATTTTTTCGAGGATATGGAGTGTTCTTGGAAAGGTCGTATAAAGAGAATCCATATAGAGGAGGCATTTGCTGAAGTGGAAAAGGCTGCTGAGGCCTTATCCCTAGCAGTCACTGAAGATTTCATGCCCATTGTATCTAGAATAAAGGCTACCACAGCTCCACTTGGAGGCCCCAAGGGAGAAATATTATATGCGCGGGAGCATGAAGCTGTTTGGTTTAAGGGAAAACGATTTGCTCCAGCTGTTTGGGCTGGCACCCCTGGGGAAGAACAAATTAAACAACTTAAACCTGCTTTAGATTCAAAAGGTAGAAAGGTCGGAGAAGAGTGGTTTACTACAATGAAAGTGGAGGATGCTTTAACAAGGTACCATGAAGCAGGTGCGAAAGCAAAAACAAGGGTTTTGGAGTTGTTGAGAGAACTTTCTTCTGACTTACAAGCAAAGATCAATGTCCTTGTCTTTGCCTCAATGCTTCTAGTTATTGCAAAGGCATTATTTGCTCATGTGAGTGAAGGGAGAAGAAGGAAATGGGTTTTTCCTGCCCTTGGAGAGTCCAGTTGGTCTAAGAATGTGAAACCATTGAGGGGAGAAAATAGAATGGCGATAGTTGGTCTATCACCATACTGGTTGGACGTGGCAGAAGGCAGCGCTGTAAATAACACTGTGGATATGCAATCGTTGTTCCTTTTAACTGGACCCAATGGTGGTGGTAAATCAAGTCTGCTACGATCAATTTGTGCTGCTGCATTACTTGGAGTTTGTGGGTTTATGGTGCCTGCACAGTCTGCCTCGATTCCTCATTTTGATTCTATTATGCTTCACATGAAATCTTATGACAGCCCCGCTGATGGGAAAAGTTCCTTTCAGGTGGAAATGGCAGAAATTCGGTCTATTGTTTCTGGAGCCACTAAAAGAAGCCTTGTACTTGTAGATGAAATTTGTCGAGGAACAGAAACAGCTAAGGGAACATGTATTGCTGGTAGTATTGTTGAAACTCTTGATGCAATAGGATGTCTTGGTATTATATCTACTCACTTGCACGGGATATTTAGCTTGCCTCTTAATACAAAGAATACGGTGCATAAAGCAATGGGAACTGTATATGTTGATGGACAACCAAAACCAACCTGGAAATTGATGGACGGCATATGTAGAGAAAGCCTTGCATTTGAAACGGCTAAGAAGGAAGGAATTCCTGAAACAATAATTGAAAGAGCTGAAGGCCTGTACCATTCAGTTTATGCGAAGGAGGTGATTCGAGGAAAGATTGACTCAAAACTAGAAGAGTTCTGTTCCACAGGTTTTAATAATTTTGATAGGTCTCATCCTCAATCAAGTAGTGCTAGAGTTGAAGCTGTCGATGGGACAGGATCAGTGAACAATATGGAAGTCTTACAGAAGGAGGTTGAGAGTGCAATCACCTTGATTTGCCAAAAGAAGCTGATTGAGCTCGACAATGAAAAGACATCAGAACTTACTGATATACAGTGTGTTCCAATTCATGTCAGGGAACAGCCACCTCCATCTACCGTAGGTGCTTCATGTGTATATGTGATTTTCAGACCTGATAGGAAACTATATGTTGGACAGACGGATGATTTGGAGGGTCGGGTGCGCACACATCGTTCAAAGGAAGGAATGCAAAAGGCAAATTTTCTTTATTTCACTGTCCCGGGGAAGAGCTTGGCTTGCCAATTAGAGACTCTACTCATCAACCAGCTCCCTAATCAAGGCTTCCATCTCAGTAATGTGGCTGATGGTAAACATAGGAATTTTGGCACCTCCAACATTTCCTTGGAAGGTGTGACAGTTTGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

1105

Amino Acids

122.25

Weight (kDa)

6.84

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	93 - 183	8.2e-10	MutS domain I
MutS_V	PF00488	728 - 910	3.5e-40	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24320 AT3G24320
fragaria_vesca	FvH4_4g05000 FvH4_4g05000 FvH4_4g05000
malus_domestica	MD13G1223200.v1.1
prunus_persica	Prupe.1G050200_v2.0.a1
pyrus_communis	pycom13g19710
rosa_chinensis	RchiOBHm_Chr4g0395811
rosa_laevigata	RLG00000009591
rosa_multiflora	Rmu_sc0001103.1_g000036 Rmu_sc0008803.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340650
rosa_rugosa	Rorug03G0354100 Rorug03G0354200
rosa_samantha	Rh4AG062500 Rh4AG063500 Rh4AG067100 Rh4BG062200 Rh4CG068500 Rh4DG057100
rosa_wichuraiana	Rw4G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1225, 1865
Acc16I	TGCGCA	1 cut(s)	3113
Acc36I	ACCTGC	4 cut(s)	368, 1225, 1795, 1865
Acc65I	GGTACC	2 cut(s)	759, 1863
AccB1I	GGYRCC	6 cut(s)	759, 1022, 1751, 1863, 2269, 3275
AccII	CGCG	2 cut(s)	526, 1693
AciI	CCGC	3 cut(s)	861, 1693, 2340
AclWI	GGATC	3 cut(s)	1346, 1359, 2875
AcsI	RAATTY	6 cut(s)	824, 2379, 2433, 2688, 3148, 3268
AcuI	CTGAAG	6 cut(s)	744, 957, 1358, 1590, 1632, 2736
AcvI	CACGTG	1 cut(s)	302
AfaI	GTAC	6 cut(s)	751, 761, 1095, 1865, 2421, 2726
AfeI	AGCGCT	1 cut(s)	2146
AflIII	ACRYGT	1 cut(s)	2465
AhdI	GACNNNNNGTC	1 cut(s)	3309
AjiI	CACGTC	1 cut(s)	2131
AjnI	CCWGG	3 cut(s)	105, 1756, 2624
Alw21I	GWGCWC	1 cut(s)	2949
Alw26I	GTCTC	3 cut(s)	1385, 2823, 3191
AlwI	GGATC	3 cut(s)	1346, 1359, 2875
AlwNI	CAGNNNCTG	1 cut(s)	1610
Ama87I	CYCGRG	2 cut(s)	418, 3169
Aor51HI	AGCGCT	1 cut(s)	2146
AoxI	GGCC	6 cut(s)	838, 1084, 1251, 1590, 1666, 2719
ApeKI	GCWGC	5 cut(s)	1176, 1583, 2142, 2237, 2240
ApoI	RAATTY	6 cut(s)	824, 2379, 2433, 2688, 3148, 3268
ArsI	GACNNNNNNTTYG	2 cut(s)	3079, 3111
Asp700I	GAANNNNTTC	4 cut(s)	101, 504, 797, 2688
Asp718I	GGTACC	2 cut(s)	759, 1863
AspA2I	CCTAGG	1 cut(s)	1000
AspLEI	GCGC	5 cut(s)	526, 1418, 1693, 2147, 3114
AspS9I	GGNCC	3 cut(s)	512, 1667, 2192
AsuC2I	CCSGG	3 cut(s)	567, 3170, 3171
AvaI	CYCGRG	2 cut(s)	418, 3169
AvaII	GGWCC	2 cut(s)	512, 2192
AvrII	CCTAGG	1 cut(s)	1000
AxyI	CCTNAGG	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	1351
BanI	GGYRCC	6 cut(s)	759, 1022, 1751, 1863, 2269, 3275
BanII	GRGCYC	1 cut(s)	2949
BbrPI	CACGTG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	2949
BbvCI	CCTCAGC	1 cut(s)	1587
BbvI	GCAGC	5 cut(s)	1188, 1570, 2154, 2224, 2227
BceAI	ACGGC	2 cut(s)	2656, 2688
BciT130I	CCWGG	3 cut(s)	107, 1758, 2626
BciVI	GTATCC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	1462
BcnI	CCSGG	3 cut(s)	567, 3170, 3171
BcoDI	GTCTC	3 cut(s)	1385, 2823, 3191
BfmI	CTRYAG	2 cut(s)	316, 633
BfoI	RGCGCY	1 cut(s)	2148
BfuAI	ACCTGC	4 cut(s)	368, 1225, 1795, 1865
BfuI	GTATCC	1 cut(s)	425
BglII	AGATCT	2 cut(s)	273, 1108
BisI	GCNGC	5 cut(s)	1177, 1584, 2143, 2238, 2241
BlnI	CCTAGG	1 cut(s)	1000
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	5 cut(s)	1178, 1585, 2144, 2239, 2242
Bme1390I	CCNGG	6 cut(s)	107, 567, 1758, 2626, 3170, 3171
Bme18I	GGWCC	2 cut(s)	512, 2192
BmeRI	GACNNNNNGTC	1 cut(s)	3309
BmeT110I	CYCGRG	2 cut(s)	418, 3169
BmgBI	CACGTC	1 cut(s)	2131
BmgT120I	GGNCC	3 cut(s)	512, 1667, 2192
BmrFI	CCNGG	6 cut(s)	107, 567, 1758, 2626, 3170, 3171
BmrI	ACTGGG	2 cut(s)	428, 1380
BmsI	GCATC	5 cut(s)	141, 343, 678, 1840, 2488
BmuI	ACTGGG	2 cut(s)	428, 1380
BpmI	CTGGAG	2 cut(s)	1719, 2418
Bpu10I	CCTNAGC	4 cut(s)	1081, 1320, 1587, 2457
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuMI	CCSGG	3 cut(s)	567, 3170, 3171
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	2823
BsaJI	CCNNGG	9 cut(s)	732, 1000, 1671, 1756, 1757, 2041, 3169, 3170, 3291
BsaXI	ACNNNNNCTCC	2 cut(s)	1639, 1669
Bse1I	ACTGG	5 cut(s)	434, 1375, 2052, 2126, 2194
Bse21I	CCTNAGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	2592
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	3 cut(s)	107, 1758, 2626
BseDI	CCNNGG	9 cut(s)	732, 1000, 1671, 1756, 1757, 2041, 3169, 3170, 3291
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	1 cut(s)	2592
BseMII	CTCAG	9 cut(s)	816, 891, 1026, 1095, 1188, 1258, 1311, 1578, 3253
BseNI	ACTGG	5 cut(s)	434, 1375, 2052, 2126, 2194
BseRI	GAGGAG	2 cut(s)	1116, 1571
BseXI	GCAGC	5 cut(s)	1188, 1570, 2154, 2224, 2227
BseYI	CCCAGC	2 cut(s)	987, 1324
BsgI	GTGCAG	3 cut(s)	181, 1286, 2259
Bsh1236I	CGCG	2 cut(s)	526, 1693
BshFI	GGCC	6 cut(s)	840, 1086, 1253, 1592, 1668, 2721
BshNI	GGYRCC	6 cut(s)	759, 1022, 1751, 1863, 2269, 3275
BsiHKAI	GWGCWC	1 cut(s)	2949
BsiHKCI	CYCGRG	2 cut(s)	418, 3169
BsiSI	CCGG	2 cut(s)	567, 3170
BslFI	GGGAC	2 cut(s)	2875, 3152
BsmAI	GTCTC	3 cut(s)	1385, 2823, 3191
BsmFI	GGGAC	2 cut(s)	2875, 3152
BsmI	GAATGC	2 cut(s)	1418, 3141
BsnI	GGCC	6 cut(s)	840, 1086, 1253, 1592, 1668, 2721
Bso31I	GGTCTC	1 cut(s)	2823
BsoBI	CYCGRG	2 cut(s)	418, 3169
Bsp1286I	GDGCHC	1 cut(s)	2949
Bsp1720I	GCTNAGC	1 cut(s)	741
BspACI	CCGC	3 cut(s)	861, 1693, 2340
BspANI	GGCC	6 cut(s)	840, 1086, 1253, 1592, 1668, 2721
BspCNI	CTCAG	9 cut(s)	815, 892, 1027, 1094, 1189, 1257, 1312, 1579, 3252
BspFNI	CGCG	2 cut(s)	526, 1693
BspMAI	CTGCAG	1 cut(s)	320
BspMI	ACCTGC	4 cut(s)	368, 1225, 1795, 1865
BspPI	GGATC	3 cut(s)	1346, 1359, 2875
BspQI	GCTCTTC	1 cut(s)	3170
BspT107I	GGYRCC	6 cut(s)	759, 1022, 1751, 1863, 2269, 3275
BspTNI	GGTCTC	1 cut(s)	2823
BsrDI	GCAATG	1 cut(s)	2592
BsrI	ACTGG	5 cut(s)	434, 1375, 2052, 2126, 2194
BssECI	CCNNGG	9 cut(s)	732, 1000, 1671, 1756, 1757, 2041, 3169, 3170, 3291
BssT1I	CCWWGG	5 cut(s)	732, 1000, 1671, 2041, 3291
Bst2UI	CCWGG	3 cut(s)	107, 1758, 2626
Bst6I	CTCTTC	3 cut(s)	1815, 2775, 3170
BstAPI	GCANNNNNTGC	3 cut(s)	1185, 1994, 2282
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	5 cut(s)	558, 1750, 2274, 2552, 3187
BstENI	CCTNNNNNAGG	1 cut(s)	3225
BstFNI	CGCG	2 cut(s)	526, 1693
BstH2I	RGCGCY	1 cut(s)	2148
BstHHI	GCGC	5 cut(s)	526, 1418, 1693, 2147, 3114
BstMAI	GTCTC	3 cut(s)	1385, 2823, 3191
BstMWI	GCNNNNNNNGC	9 cut(s)	737, 1185, 1589, 1652, 1745, 1994, 2282, 2944, 3186
BstNI	CCWGG	3 cut(s)	107, 1758, 2626
BstNSI	RCATGY	4 cut(s)	560, 1164, 1309, 2469
BstSCI	CCNGG	6 cut(s)	105, 565, 1756, 2624, 3168, 3169
BstSFI	CTRYAG	2 cut(s)	316, 633
BstUI	CGCG	2 cut(s)	526, 1693
BstV1I	GCAGC	5 cut(s)	1188, 1570, 2154, 2224, 2227
BstX2I	RGATCY	3 cut(s)	273, 1108, 1351
BstXI	CCANNNNNNTGG	1 cut(s)	1743
BstYI	RGATCY	3 cut(s)	273, 1108, 1351
Bsu36I	CCTNAGG	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	6 cut(s)	840, 1086, 1253, 1592, 1668, 2721
BtrI	CACGTC	1 cut(s)	2131
BtsIMutI	CAGTG	7 cut(s)	492, 963, 1608, 2157, 2877, 2990, 3162
BveI	ACCTGC	4 cut(s)	368, 1225, 1795, 1865
Cac8I	GCNNGC	5 cut(s)	558, 1750, 2274, 2552, 3187
CaiI	CAGNNNCTG	1 cut(s)	1610
CfoI	GCGC	5 cut(s)	526, 1418, 1693, 2147, 3114
Cfr13I	GGNCC	3 cut(s)	512, 1667, 2192
Cfr9I	CCCGGG	1 cut(s)	3169
Csp6I	GTAC	6 cut(s)	750, 760, 1094, 1864, 2420, 2725
CspCI	CAANNNNNGTGG	4 cut(s)	1824, 1859, 2185, 2220
CviQI	GTAC	6 cut(s)	750, 760, 1094, 1864, 2420, 2725
DriI	GACNNNNNGTC	1 cut(s)	3309
Eam1104I	CTCTTC	3 cut(s)	1815, 2775, 3170
Eam1105I	GACNNNNNGTC	1 cut(s)	3309
EarI	CTCTTC	3 cut(s)	1815, 2775, 3170
Ecl136II	GAGCTC	1 cut(s)	2947
Eco130I	CCWWGG	5 cut(s)	732, 1000, 1671, 2041, 3291
Eco147I	AGGCCT	4 cut(s)	840, 1086, 1592, 2721
Eco24I	GRGCYC	1 cut(s)	2949
Eco31I	GGTCTC	1 cut(s)	2823
Eco47I	GGWCC	2 cut(s)	512, 2192
Eco47III	AGCGCT	1 cut(s)	2146
Eco53kI	GAGCTC	1 cut(s)	2947
Eco57I	CTGAAG	6 cut(s)	744, 957, 1358, 1590, 1632, 2736
Eco72I	CACGTG	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	343
Eco88I	CYCGRG	2 cut(s)	418, 3169
EcoICRI	GAGCTC	1 cut(s)	2947
EcoNI	CCTNNNNNAGG	1 cut(s)	3225
EcoO109I	RGGNCCY	1 cut(s)	1667
EcoRI	GAATTC	1 cut(s)	2688
EcoRII	CCWGG	3 cut(s)	105, 1756, 2624
EcoT14I	CCWWGG	5 cut(s)	732, 1000, 1671, 2041, 3291
EcoT22I	ATGCAT	1 cut(s)	1311
EcoT38I	GRGCYC	1 cut(s)	2949
ErhI	CCWWGG	5 cut(s)	732, 1000, 1671, 2041, 3291
FaqI	GGGAC	2 cut(s)	2875, 3152
FauI	CCCGC	2 cut(s)	1686, 2347
FauNDI	CATATG	1 cut(s)	2645
FbaI	TGATCA	1 cut(s)	1462
Fnu4HI	GCNGC	5 cut(s)	1177, 1584, 2143, 2238, 2241
FriOI	GRGCYC	1 cut(s)	2949
Fsp4HI	GCNGC	5 cut(s)	1177, 1584, 2143, 2238, 2241
FspAI	RTGCGCAY	1 cut(s)	3113
FspI	TGCGCA	1 cut(s)	3113
GlaI	GCGC	5 cut(s)	525, 1417, 1692, 2146, 3113
GluI	GCNGC	5 cut(s)	1177, 1584, 2143, 2238, 2241
GsaI	CCCAGC	2 cut(s)	991, 1328
GsuI	CTGGAG	2 cut(s)	1719, 2418
HaeII	RGCGCY	1 cut(s)	2148
HaeIII	GGCC	6 cut(s)	840, 1086, 1253, 1592, 1668, 2721
HapII	CCGG	2 cut(s)	567, 3170
HhaI	GCGC	5 cut(s)	526, 1418, 1693, 2147, 3114
Hin6I	GCGC	5 cut(s)	524, 1416, 1691, 2145, 3112
HinP1I	GCGC	5 cut(s)	524, 1416, 1691, 2145, 3112
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	567, 3170
Hpy166II	GTNNAC	7 cut(s)	14, 229, 1203, 1457, 1830, 2875, 3260
Hpy8I	GTNNAC	7 cut(s)	14, 229, 1203, 1457, 1830, 2875, 3260
HpyCH4IV	ACGT	3 cut(s)	301, 579, 2130
HpyF10VI	GCNNNNNNNGC	9 cut(s)	737, 1185, 1589, 1652, 1745, 1994, 2282, 2944, 3186
HpySE526I	ACGT	3 cut(s)	301, 579, 2130
HspAI	GCGC	5 cut(s)	524, 1416, 1691, 2145, 3112
KpnI	GGTACC	2 cut(s)	763, 1867
Ksp22I	TGATCA	1 cut(s)	1462
LguI	GCTCTTC	1 cut(s)	3170
LmnI	GCTCC	6 cut(s)	750, 1660, 1696, 1738, 2399, 3222
Lsp1109I	GCAGC	5 cut(s)	1188, 1570, 2154, 2224, 2227
LweI	GCATC	5 cut(s)	141, 343, 678, 1840, 2488
MaeII	ACGT	3 cut(s)	301, 579, 2130
MaeIII	GTNAC	5 cut(s)	326, 946, 961, 1606, 3301
MflI	RGATCY	3 cut(s)	273, 1108, 1351
MhlI	GDGCHC	1 cut(s)	2949
MlyI	GAGTC	5 cut(s)	253, 1006, 2057, 2762, 3193
MmeI	TCCRAC	6 cut(s)	539, 619, 1795, 2106, 3061, 3306
Mph1103I	ATGCAT	1 cut(s)	1311
MroXI	GAANNNNTTC	4 cut(s)	101, 504, 797, 2688
MslI	CAYNNNNRTG	1 cut(s)	2004
MspA1I	CMGCKG	3 cut(s)	184, 1739, 2342
MspI	CCGG	2 cut(s)	567, 3170
MspR9I	CCNGG	6 cut(s)	107, 567, 1758, 2626, 3170, 3171
Mva1269I	GAATGC	2 cut(s)	1418, 3141
MvaI	CCWGG	3 cut(s)	107, 1758, 2626
MvnI	CGCG	2 cut(s)	526, 1693
MwoI	GCNNNNNNNGC	9 cut(s)	737, 1185, 1589, 1652, 1745, 1994, 2282, 2944, 3186
NciI	CCSGG	3 cut(s)	567, 3170, 3171
NdeI	CATATG	1 cut(s)	2645
NmuCI	GTSAC	4 cut(s)	326, 961, 1606, 3301
NsbI	TGCGCA	1 cut(s)	3113
NsiI	ATGCAT	1 cut(s)	1311
NspI	RCATGY	4 cut(s)	560, 1164, 1309, 2469
PaeI	GCATGC	1 cut(s)	560
PaqCI	CACCTGC	2 cut(s)	1225, 1865
PasI	CCCWGGG	1 cut(s)	1757
PceI	AGGCCT	4 cut(s)	840, 1086, 1592, 2721
PciI	ACATGT	1 cut(s)	2465
PciSI	GCTCTTC	1 cut(s)	3170
PctI	GAATGC	2 cut(s)	1418, 3141
PdmI	GAANNNNTTC	4 cut(s)	101, 504, 797, 2688
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	5 cut(s)	1178, 1585, 2144, 2239, 2242
PleI	GAGTC	5 cut(s)	252, 1006, 2056, 2762, 3193
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	5 cut(s)	252, 1006, 2056, 2762, 3193
Ppu21I	YACGTR	1 cut(s)	302
PscI	ACATGT	1 cut(s)	2465
Psp124BI	GAGCTC	1 cut(s)	2949
Psp6I	CCWGG	3 cut(s)	105, 1756, 2624
PspCI	CACGTG	1 cut(s)	302
PspFI	CCCAGC	2 cut(s)	987, 1324
PspGI	CCWGG	3 cut(s)	105, 1756, 2624
PspPI	GGNCC	3 cut(s)	512, 1667, 2192
PstI	CTGCAG	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	1610
PsuI	RGATCY	3 cut(s)	273, 1108, 1351
PvuII	CAGCTG	2 cut(s)	184, 1739
RsaI	GTAC	6 cut(s)	751, 761, 1095, 1865, 2421, 2726
RsaNI	GTAC	6 cut(s)	750, 760, 1094, 1864, 2420, 2725
RseI	CAYNNNNRTG	1 cut(s)	2004
SacI	GAGCTC	1 cut(s)	2949
SapI	GCTCTTC	1 cut(s)	3170
SatI	GCNGC	5 cut(s)	1177, 1584, 2143, 2238, 2241
Sau96I	GGNCC	3 cut(s)	512, 1667, 2192
SchI	GAGTC	5 cut(s)	253, 1006, 2057, 2762, 3193
ScrFI	CCNGG	6 cut(s)	107, 567, 1758, 2626, 3170, 3171
SduI	GDGCHC	1 cut(s)	2949
SfaNI	GCATC	5 cut(s)	141, 343, 678, 1840, 2488
SfcI	CTRYAG	2 cut(s)	316, 633
SinI	GGWCC	2 cut(s)	512, 2192
SmaI	CCCGGG	1 cut(s)	3171
SmiMI	CAYNNNNRTG	1 cut(s)	2004
SphI	GCATGC	1 cut(s)	560
SseBI	AGGCCT	4 cut(s)	840, 1086, 1592, 2721
SsiI	CCGC	3 cut(s)	861, 1693, 2340
SspI	AATATT	1 cut(s)	1683
SstI	GAGCTC	1 cut(s)	2949
StuI	AGGCCT	4 cut(s)	840, 1086, 1592, 2721
StyD4I	CCNGG	6 cut(s)	105, 565, 1756, 2624, 3168, 3169
StyI	CCWWGG	5 cut(s)	732, 1000, 1671, 2041, 3291
TaiI	ACGT	3 cut(s)	304, 582, 2133
TaqII	GACCGA	1 cut(s)	2373
TatI	WGTACW	2 cut(s)	1093, 2419
TscAI	CASTG	7 cut(s)	492, 970, 1615, 2164, 2877, 2990, 3169
TseFI	GTSAC	4 cut(s)	326, 961, 1606, 3301
TseI	GCWGC	5 cut(s)	1176, 1583, 2142, 2237, 2240
Tsp45I	GTSAC	4 cut(s)	326, 961, 1606, 3301
TspGWI	ACGGA	3 cut(s)	487, 737, 3104
TspMI	CCCGGG	1 cut(s)	3169
TspRI	CASTG	7 cut(s)	492, 970, 1615, 2164, 2877, 2990, 3169
VpaK11BI	GGWCC	2 cut(s)	512, 2192
XagI	CCTNNNNNAGG	1 cut(s)	3225
XapI	RAATTY	6 cut(s)	824, 2379, 2433, 2688, 3148, 3268
XbaI	TCTAGA	1 cut(s)	1634
XceI	RCATGY	4 cut(s)	560, 1164, 1309, 2469
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2622, 3289
XmaI	CCCGGG	1 cut(s)	3169
XmaJI	CCTAGG	1 cut(s)	1000
XmnI	GAANNNNTTC	4 cut(s)	101, 504, 797, 2688
Zsp2I	ATGCAT	1 cut(s)	1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.