Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009572

Physical Location & Seq

Genomic Coordinates Reverse (-)

43653568 .. 43655473

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0354100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTTGCAGTGACGGTATTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCCGATATCTTGATCAGCTCTCGCTATCCAGTGTAGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTTTGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTCCTATGGATATTCATGGATAAATTTTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATTCCTGCACTATTTGGTGCTTCAATTATTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTCATTTTCCCAATGGTCCTATCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGAATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAAAGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATTCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGTTTGCCTTACAATCTCTACTTTGCACTTCACTTTATCATATGGATTTGGAGCTGCTGCAAGTACTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAAGCGCTTATTGTAAGCACAACTCTCTTTTGCTGTCGTTCTGTTGTGGGAGGTGCTTTCAGCAGTGAGAAGCAGGTAGTGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGGCATATTTCAGTTAAGAATGATCAACTGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

336

Amino Acids

36.53

Weight (kDa)

8.7

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	4 - 158	1.6e-25	MatE
MatE	PF01554	222 - 329	9.9e-17	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24320 AT3G24320
fragaria_vesca	FvH4_4g05000 FvH4_4g05000 FvH4_4g05000
malus_domestica	MD13G1223200.v1.1
prunus_persica	Prupe.1G050200_v2.0.a1
pyrus_communis	pycom13g19710
rosa_chinensis	RchiOBHm_Chr4g0395811
rosa_laevigata	RLG00000009591
rosa_multiflora	Rmu_sc0001103.1_g000036 Rmu_sc0008803.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340650
rosa_rugosa	Rorug03G0354100 Rorug03G0354200
rosa_samantha	Rh4AG062500 Rh4AG063500 Rh4AG067100 Rh4BG062200 Rh4CG068500 Rh4DG057100
rosa_wichuraiana	Rw4G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	137, 886
AclWI	GGATC	2 cut(s)	302, 315
AcsI	RAATTY	2 cut(s)	284, 497
AcuI	CTGAAG	3 cut(s)	308, 511, 843
AfaI	GTAC	3 cut(s)	220, 739, 969
AfeI	AGCGCT	1 cut(s)	828
AfiI	CCNNNNNNNGG	2 cut(s)	168, 299
AgsI	TTSAA	3 cut(s)	342, 375, 615
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	7 cut(s)	73, 493, 728, 764, 782, 791, 957
AluI	AGCT	7 cut(s)	73, 493, 728, 764, 782, 791, 957
Alw26I	GTCTC	3 cut(s)	266, 411, 419
AlwI	GGATC	2 cut(s)	302, 315
AlwNI	CAGNNNCTG	1 cut(s)	821
Ama87I	CYCGRG	2 cut(s)	741, 783
Aor51HI	AGCGCT	1 cut(s)	828
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	728, 731, 779, 800
ApoI	RAATTY	2 cut(s)	284, 497
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	55, 430
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	2 cut(s)	741, 783
AvaII	GGWCC	2 cut(s)	55, 430
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	580
BbvI	GCAGC	4 cut(s)	715, 718, 787, 791
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	67, 996
BcoDI	GTCTC	3 cut(s)	266, 411, 419
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	1 cut(s)	830
BfuAI	ACCTGC	2 cut(s)	137, 886
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	4 cut(s)	729, 732, 780, 801
BlsI	GCNGC	4 cut(s)	730, 733, 781, 802
BmcAI	AGTACT	2 cut(s)	739, 969
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	55, 430
BmeT110I	CYCGRG	2 cut(s)	741, 783
BmgT120I	GGNCC	2 cut(s)	55, 430
BmiI	GGNNCC	2 cut(s)	309, 565
BmrFI	CCNGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	580
BpmI	CTGGAG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 299
Bse1I	ACTGG	4 cut(s)	84, 124, 254, 403
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	168, 299
BseMII	CTCAG	5 cut(s)	422, 597, 828, 954, 987
BseNI	ACTGG	4 cut(s)	84, 124, 254, 403
BseXI	GCAGC	4 cut(s)	715, 718, 787, 791
BseYI	CCCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	44
BsiHKCI	CYCGRG	2 cut(s)	741, 783
BslI	CCNNNNNNNGG	2 cut(s)	168, 299
BsmAI	GTCTC	3 cut(s)	266, 411, 419
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	2 cut(s)	741, 783
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	67, 307, 996
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	5 cut(s)	421, 596, 827, 953, 986
BspDI	ATCGAT	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	309, 565
BspMAI	CTGCAG	1 cut(s)	805
BspMI	ACCTGC	2 cut(s)	137, 886
BspPI	GGATC	2 cut(s)	302, 315
BsrI	ACTGG	4 cut(s)	84, 124, 254, 403
BssMI	GATC	3 cut(s)	67, 307, 996
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	16, 387
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	174, 331
BstDEI	CTNAG	5 cut(s)	408, 583, 814, 940, 973
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	3 cut(s)	70, 310, 999
BstMAI	GTCTC	3 cut(s)	266, 411, 419
BstMBI	GATC	3 cut(s)	67, 307, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 476, 788, 797
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	4 cut(s)	715, 718, 787, 791
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	44
BtsI	GCAGTG	3 cut(s)	15, 810, 892
BtsIMutI	CAGTG	6 cut(s)	15, 91, 117, 810, 819, 892
BveI	ACCTGC	2 cut(s)	137, 886
Cac8I	GCNNGC	2 cut(s)	174, 331
CaiI	CAGNNNCTG	1 cut(s)	821
CfoI	GCGC	1 cut(s)	829
Cfr13I	GGNCC	2 cut(s)	55, 430
ClaI	ATCGAT	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	219, 738, 968
CviAII	CATG	3 cut(s)	277, 474, 632
CviQI	GTAC	3 cut(s)	219, 738, 968
DdeI	CTNAG	5 cut(s)	408, 583, 814, 940, 973
DpnI	GATC	3 cut(s)	69, 309, 998
DpnII	GATC	3 cut(s)	67, 307, 996
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	481
Eco32I	GATATC	3 cut(s)	62, 231, 318
Eco47I	GGWCC	2 cut(s)	55, 430
Eco47III	AGCGCT	1 cut(s)	828
Eco57I	CTGAAG	3 cut(s)	308, 511, 843
Eco88I	CYCGRG	2 cut(s)	741, 783
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	303
EcoRV	GATATC	3 cut(s)	62, 231, 318
EcoT38I	GRGCYC	1 cut(s)	481
FaeI	CATG	3 cut(s)	280, 477, 635
FatI	CATG	3 cut(s)	276, 473, 631
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	2 cut(s)	67, 996
Fnu4HI	GCNGC	4 cut(s)	729, 732, 780, 801
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	4 cut(s)	729, 732, 780, 801
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	4 cut(s)	729, 732, 780, 801
GsaI	CCCAGC	1 cut(s)	563
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	3 cut(s)	280, 477, 635
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	412, 620
HpaI	GTTAAC	1 cut(s)	390
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	390, 904
Hpy188I	TCNGA	3 cut(s)	59, 411, 930
Hpy188III	TCNNGA	2 cut(s)	65, 592
Hpy8I	GTNNAC	2 cut(s)	390, 904
HpyAV	CCTTC	3 cut(s)	140, 332, 535
HpyCH4III	ACNGT	2 cut(s)	16, 387
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 476, 788, 797
HpyF3I	CTNAG	5 cut(s)	408, 583, 814, 940, 973
Hsp92II	CATG	3 cut(s)	280, 477, 635
HspAI	GCGC	1 cut(s)	827
Ksp22I	TGATCA	2 cut(s)	67, 996
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	67, 307, 996
LmnI	GCTCC	3 cut(s)	182, 725, 761
Lsp1109I	GCAGC	4 cut(s)	715, 718, 787, 791
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	3 cut(s)	10, 115, 817
MalI	GATC	3 cut(s)	69, 309, 998
MboI	GATC	3 cut(s)	67, 307, 996
MboII	GAAGA	5 cut(s)	20, 443, 448, 580, 620
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	6 cut(s)	93, 284, 375, 497, 609, 755
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	7 cut(s)	261, 448, 481, 592, 866, 936, 947
MseI	TTAA	3 cut(s)	381, 389, 989
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	182, 476, 788, 797
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	3 cut(s)	67, 307, 996
NlaIII	CATG	3 cut(s)	280, 477, 635
NlaIV	GGNNCC	2 cut(s)	309, 565
NmuCI	GTSAC	3 cut(s)	10, 115, 817
PaeR7I	CTCGAG	1 cut(s)	783
PaqCI	CACCTGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	4 cut(s)	730, 733, 781, 802
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	309, 565
PspPI	GGNCC	2 cut(s)	55, 430
PspXI	VCTCGAGB	1 cut(s)	783
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	3 cut(s)	220, 739, 969
RsaNI	GTAC	3 cut(s)	219, 738, 968
SaqAI	TTAA	3 cut(s)	381, 389, 989
SatI	GCNGC	4 cut(s)	729, 732, 780, 801
Sau3AI	GATC	3 cut(s)	67, 307, 996
Sau96I	GGNCC	2 cut(s)	55, 430
ScaI	AGTACT	2 cut(s)	739, 969
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	801
Sfr274I	CTCGAG	1 cut(s)	783
SinI	GGWCC	2 cut(s)	55, 430
SlaI	CTCGAG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	6 cut(s)	93, 284, 375, 497, 609, 755
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	16, 387
TaqI	TCGA	3 cut(s)	44, 591, 784
TasI	AATT	6 cut(s)	93, 284, 375, 497, 609, 755
TatI	WGTACW	3 cut(s)	218, 737, 967
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	3 cut(s)	381, 389, 989
Tru9I	TTAA	3 cut(s)	381, 389, 989
TscAI	CASTG	6 cut(s)	15, 91, 124, 810, 826, 892
TseFI	GTSAC	3 cut(s)	10, 115, 817
TseI	GCWGC	4 cut(s)	728, 731, 779, 800
Tsp45I	GTSAC	3 cut(s)	10, 115, 817
TspDTI	ATGAA	3 cut(s)	265, 620, 768
TspRI	CASTG	6 cut(s)	15, 91, 124, 810, 826, 892
VpaK11BI	GGWCC	2 cut(s)	55, 430
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	2 cut(s)	284, 497
XhoI	CTCGAG	1 cut(s)	783
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	2 cut(s)	739, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.