Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001103.1

Orthogroup ID

OG0009572

Physical Location & Seq

Genomic Coordinates Reverse (-)

143177 .. 144749

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001103.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggagatagttggtctatcaccatactggttggacgtagcagaaggcagtgctgtaaataacactgtggctatgcaatcgttgttccttttaactggacccaatggtggtggtaaatcaagtctgctacgatcaatttgtgctgctgcattacttggagtttgtgggtttatggtgcctgcagagtctgcctcgattcctcattttgactctattatgcttcacatgaaatcttatgacagccccgctgatgggaaaagttcctttcaggtggaaatggcagaaattcggtctattgtttctggagccactaaaagaagccttgttcttgtagatgaaatttgtcgaggaacagaaacagctaagggaacatgtattgctggtagtattgttgaaactcttgatgcaataggatgtcttggtatcatatctactcacttgcatgggatatttagcttgcctcttaatacaaagaatacggtgcataaagcaatgggaactgtatatgttgacagacaaccaaaaccaacctggaaattgatggacggcatatgtagagaaagccttgcatttgaaacggctaagaaggaaggaattcctgaaacaataattgaaagagctgaaggcctgtaccattcagtttatgcaaaggaggtgattcgaggaaagattgactcaaaactagaagagttctgttccacaggttttaataattttgataggtctcatcctcaatcaagtagtgctagggttgaagctgtcgatgggacaggatcagtgaacaatatggaagtcttacagaaggaggttgagagtgcaatcaccttgatttgccaaaagaagctgattgagcttgacaataagaaaacatcagaacttactgatatacagtgtgttccaattcatgtcagggaacagccacctccatcaaccgtaggtgcttcatgtgtatatgtgattttcagacccgataggaaactatatgttggacagacggatgatttggagggtcgggtgcgcacacatcgttcaaaggaaggaatgcaaaaggcaaattttctttatttcactgtcccggggaagagcttggcttgccaattagagactcttctcatcaaccagctccctaatcaaggcttccatctcagtaatgtggctgatggtaaacataggaattttggcacctccaacatttccttggaaggtgtgacggtttgtccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

407

Amino Acids

44.24

Weight (kDa)

6.28

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24320 AT3G24320
fragaria_vesca	FvH4_4g05000 FvH4_4g05000 FvH4_4g05000
malus_domestica	MD13G1223200.v1.1
prunus_persica	Prupe.1G050200_v2.0.a1
pyrus_communis	pycom13g19710
rosa_chinensis	RchiOBHm_Chr4g0395811
rosa_laevigata	RLG00000009591
rosa_multiflora	Rmu_sc0001103.1_g000036 Rmu_sc0008803.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340650
rosa_rugosa	Rorug03G0354100 Rorug03G0354200
rosa_samantha	Rh4AG062500 Rh4AG063500 Rh4AG067100 Rh4BG062200 Rh4CG068500 Rh4DG057100
rosa_wichuraiana	Rw4G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1019
AccB1I	GGYRCC	2 cut(s)	175, 1181
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	781
AcsI	RAATTY	5 cut(s)	285, 339, 594, 1054, 1174
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	4 cut(s)	107, 251, 252, 1133
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	395, 575, 614, 755, 1032
AhdI	GACNNNNNGTC	1 cut(s)	1215
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	8 cut(s)	362, 456, 620, 758, 844, 853, 1086, 1123
AluI	AGCT	8 cut(s)	362, 456, 620, 758, 844, 853, 1086, 1123
Alw26I	GTCTC	2 cut(s)	729, 1097
AlwI	GGATC	1 cut(s)	781
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	1075
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	2 cut(s)	143, 146
ApoI	RAATTY	5 cut(s)	285, 339, 594, 1054, 1174
ArsI	GACNNNNNNTTYG	2 cut(s)	985, 1017
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	1020
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	1076, 1077
AsuHPI	GGTGA	3 cut(s)	12, 667, 814
AvaI	CYCGRG	1 cut(s)	1075
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	2 cut(s)	175, 1181
BbvI	GCAGC	2 cut(s)	130, 133
BccI	CCATC	6 cut(s)	245, 535, 758, 934, 1149, 1154
BceAI	ACGGC	2 cut(s)	562, 594
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	1076, 1077
BcoDI	GTCTC	2 cut(s)	729, 1097
BfaI	CTAG	2 cut(s)	683, 747
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
Bme1390I	CCNGG	3 cut(s)	532, 1076, 1077
Bme18I	GGWCC	1 cut(s)	98
BmeRI	GACNNNNNGTC	1 cut(s)	1215
BmeT110I	CYCGRG	1 cut(s)	1075
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	4 cut(s)	100, 177, 307, 1183
BmrFI	CCNGG	3 cut(s)	532, 1076, 1077
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	2 cut(s)	1076, 1077
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	1075, 1076, 1197
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 251, 252, 1133
Bse1I	ACTGG	2 cut(s)	32, 100
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	3 cut(s)	1075, 1076, 1197
BseGI	GGATG	3 cut(s)	419, 727, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	107, 251, 252, 1133
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	1159
BseNI	ACTGG	2 cut(s)	32, 100
BseXI	GCAGC	2 cut(s)	130, 133
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	2 cut(s)	175, 1181
BsiHKCI	CYCGRG	1 cut(s)	1075
BsiSI	CCGG	1 cut(s)	1076
BslFI	GGGAC	2 cut(s)	781, 1058
BslI	CCNNNNNNNGG	4 cut(s)	107, 251, 252, 1133
BsmAI	GTCTC	2 cut(s)	729, 1097
BsmFI	GGGAC	2 cut(s)	781, 1058
BsmI	GAATGC	1 cut(s)	1047
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	1 cut(s)	729
BsoBI	CYCGRG	1 cut(s)	1075
Bsp143I	GATC	2 cut(s)	131, 773
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	1 cut(s)	1158
BspLI	GGNNCC	4 cut(s)	100, 177, 307, 1183
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	781
BspQI	GCTCTTC	1 cut(s)	1076
BspT107I	GGYRCC	2 cut(s)	175, 1181
BspTNI	GGTCTC	1 cut(s)	729
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	32, 100
BssECI	CCNNGG	3 cut(s)	1075, 1076, 1197
BssMI	GATC	2 cut(s)	131, 773
BssT1I	CCWWGG	1 cut(s)	1197
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	7 cut(s)	67, 481, 502, 891, 934, 1072, 1213
Bst6I	CTCTTC	3 cut(s)	681, 1076, 1113
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	180, 458, 1093
BstDEI	CTNAG	3 cut(s)	363, 582, 1145
BstENI	CCTNNNNNAGG	1 cut(s)	1131
BstF5I	GGATG	3 cut(s)	419, 727, 1003
BstHHI	GCGC	1 cut(s)	1020
BstKTI	GATC	2 cut(s)	134, 776
BstMAI	GTCTC	2 cut(s)	729, 1097
BstMBI	GATC	2 cut(s)	131, 773
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 850, 1092
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	3 cut(s)	530, 1074, 1075
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	130, 133
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	419, 727, 1003
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	5 cut(s)	55, 63, 783, 896, 1068
Cac8I	GCNNGC	3 cut(s)	180, 458, 1093
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	1020
Cfr13I	GGNCC	1 cut(s)	98
Cfr9I	CCCGGG	1 cut(s)	1075
Csp6I	GTAC	1 cut(s)	631
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	5 cut(s)	226, 372, 443, 905, 945
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	3 cut(s)	363, 582, 1145
DpnI	GATC	2 cut(s)	133, 775
DpnII	GATC	2 cut(s)	131, 773
DriI	GACNNNNNGTC	1 cut(s)	1215
Eam1104I	CTCTTC	3 cut(s)	681, 1076, 1113
Eam1105I	GACNNNNNGTC	1 cut(s)	1215
EarI	CTCTTC	3 cut(s)	681, 1076, 1113
Eco130I	CCWWGG	1 cut(s)	1197
Eco147I	AGGCCT	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	1075
EcoNI	CCTNNNNNAGG	1 cut(s)	1131
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	1197
ErhI	CCWWGG	1 cut(s)	1197
FaeI	CATG	5 cut(s)	229, 375, 446, 908, 948
FaqI	GGGAC	2 cut(s)	781, 1058
FatI	CATG	5 cut(s)	225, 371, 442, 904, 944
FauI	CCCGC	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	551
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	3 cut(s)	426, 714, 1010
Fsp4HI	GCNGC	2 cut(s)	144, 147
FspAI	RTGCGCAY	1 cut(s)	1019
FspBI	CTAG	2 cut(s)	683, 747
FspI	TGCGCA	1 cut(s)	1019
GlaI	GCGC	1 cut(s)	1019
GluI	GCNGC	2 cut(s)	144, 147
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	627
HapII	CCGG	1 cut(s)	1076
HhaI	GCGC	1 cut(s)	1020
Hin1II	CATG	5 cut(s)	229, 375, 446, 908, 948
Hin6I	GCGC	1 cut(s)	1018
HinP1I	GCGC	1 cut(s)	1018
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	6 cut(s)	185, 196, 209, 658, 674, 1105
HpaII	CCGG	1 cut(s)	1076
HphI	GGTGA	3 cut(s)	12, 667, 814
Hpy166II	GTNNAC	3 cut(s)	511, 781, 1166
Hpy188I	TCNGA	2 cut(s)	874, 965
Hpy188III	TCNNGA	3 cut(s)	303, 401, 599
Hpy8I	GTNNAC	3 cut(s)	511, 781, 1166
HpyAV	CCTTC	7 cut(s)	38, 580, 584, 617, 796, 1031, 1196
HpyCH4III	ACNGT	7 cut(s)	67, 481, 502, 891, 934, 1072, 1213
HpyCH4IV	ACGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 850, 1092
HpyF3I	CTNAG	3 cut(s)	363, 582, 1145
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	229, 375, 446, 908, 948
HspAI	GCGC	1 cut(s)	1018
Kzo9I	GATC	2 cut(s)	131, 773
LguI	GCTCTTC	1 cut(s)	1076
LmnI	GCTCC	2 cut(s)	305, 1128
Lsp1109I	GCAGC	2 cut(s)	130, 133
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	683, 747
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	1207
MalI	GATC	2 cut(s)	133, 775
MboI	GATC	2 cut(s)	131, 773
MboII	GAAGA	3 cut(s)	698, 1093, 1100
MlyI	GAGTC	4 cut(s)	194, 203, 668, 1099
MmeI	TCCRAC	3 cut(s)	12, 967, 1212
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	92, 465, 708
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	1076
MspR9I	CCNGG	3 cut(s)	532, 1076, 1077
Mva1269I	GAATGC	1 cut(s)	1047
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	3 cut(s)	188, 850, 1092
NciI	CCSGG	2 cut(s)	1076, 1077
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	2 cut(s)	131, 773
NlaIII	CATG	5 cut(s)	229, 375, 446, 908, 948
NlaIV	GGNNCC	4 cut(s)	100, 177, 307, 1183
NmuCI	GTSAC	1 cut(s)	1207
NsbI	TGCGCA	1 cut(s)	1019
NspI	RCATGY	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	627
PciI	ACATGT	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	1076
PctI	GAATGC	1 cut(s)	1047
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	196, 658
PkrI	GCNGC	2 cut(s)	145, 148
PleI	GAGTC	4 cut(s)	193, 203, 668, 1099
PpsI	GAGTC	4 cut(s)	193, 203, 668, 1099
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	4 cut(s)	100, 177, 307, 1183
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	1076
SaqAI	TTAA	3 cut(s)	92, 465, 708
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	2 cut(s)	131, 773
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	4 cut(s)	194, 203, 668, 1099
ScrFI	CCNGG	3 cut(s)	532, 1076, 1077
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	1 cut(s)	441
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	683, 747
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	3 cut(s)	530, 1074, 1075
StyI	CCWWGG	1 cut(s)	1197
TaaI	ACNGT	7 cut(s)	67, 481, 502, 891, 934, 1072, 1213
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	4 cut(s)	194, 346, 661, 762
TaqII	GACCGA	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	196, 658
Tru1I	TTAA	3 cut(s)	92, 465, 708
Tru9I	TTAA	3 cut(s)	92, 465, 708
TscAI	CASTG	5 cut(s)	55, 70, 783, 896, 1075
TseFI	GTSAC	1 cut(s)	1207
TseI	GCWGC	2 cut(s)	143, 146
Tsp45I	GTSAC	1 cut(s)	1207
TspDTI	ATGAA	4 cut(s)	242, 351, 893, 933
TspGWI	ACGGA	1 cut(s)	1010
TspMI	CCCGGG	1 cut(s)	1075
TspRI	CASTG	5 cut(s)	55, 70, 783, 896, 1075
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	1131
XapI	RAATTY	5 cut(s)	285, 339, 594, 1054, 1174
XceI	RCATGY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	2 cut(s)	528, 1195
XmaI	CCCGGG	1 cut(s)	1075
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	2 cut(s)	683, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.