Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018598

Physical Location & Seq

Genomic Coordinates Reverse (-)

34893639 .. 34898972

Gene Structure 5334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTATCCAAAAACGCGACTCCTCCCGTCGGCCTGTACTTGGATCCGAACGAAATGGCATTACCCGGACTCGGGCCTTTCGCCTCAGTCACTACGGCGGCGACCACCACGGTGTCGACGACGTCATCGGCGGAGGATCTGAGCAAAAAGATTCGGAAGCCCCACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCCGAGCACGCTTTGGCTGTGATTGGAATAAGATTGAAGCTTTTATCGAGTCGAAGACAGTTATACAGAAGCTGCTTAATCTTGCGAAGTTATTCTAGACACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.11

Weight (kDa)

9.93

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018598)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411111
rosa_laevigata	RLG00000023310
rosa_multiflora	Rmu_sc0008540.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109050 Rroxscaffold_2G00109120
rosa_samantha	Rh2CG341000 Rh7AG504900 Rh7BG361000 Rh7BG476700
rosa_wichuraiana	Rw2G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	98, 131
AclWI	GGATC	3 cut(s)	38, 51, 144
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 72
AgsI	TTSAA	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	189, 238, 270
AluI	AGCT	3 cut(s)	189, 238, 270
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	38, 51, 144
AlwNI	CAGNNNCTG	1 cut(s)	270
Ama87I	CYCGRG	2 cut(s)	71, 200
AoxI	GGCC	2 cut(s)	31, 74
ApeKI	GCWGC	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	66
AvaI	CYCGRG	2 cut(s)	71, 200
BamHI	GGATCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	99, 271
BlsI	GCNGC	2 cut(s)	100, 272
Bme1390I	CCNGG	1 cut(s)	66
BmeT110I	CYCGRG	2 cut(s)	71, 200
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 72
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 72
BseMII	CTCAG	3 cut(s)	99, 131, 186
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	33, 76
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	71, 200
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 72
BsnI	GGCC	2 cut(s)	33, 76
BsoBI	CYCGRG	2 cut(s)	71, 200
Bsp1286I	GDGCHC	2 cut(s)	201, 207
Bsp143I	GATC	2 cut(s)	43, 136
BspACI	CCGC	2 cut(s)	98, 131
BspANI	GGCC	2 cut(s)	33, 76
BspCNI	CTCAG	3 cut(s)	98, 132, 187
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	3 cut(s)	38, 51, 144
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	43, 136
BssNI	GRCGYC	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	112, 258, 302
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	85, 140, 195
BstDSI	CCRYGG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	46, 139
BstMBI	GATC	2 cut(s)	43, 136
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	43, 136
BstYI	RGATCY	2 cut(s)	43, 136
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	33, 76
BtgI	CCRYGG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	37
CviJI	RGCY	8 cut(s)	33, 76, 160, 189, 199, 215, 238, 270
CviKI_1	RGCY	8 cut(s)	33, 76, 160, 189, 199, 215, 238, 270
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	85, 140, 195
DpnI	GATC	2 cut(s)	45, 138
DpnII	GATC	2 cut(s)	43, 136
EciI	GGCGGA	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	201
Eco88I	CYCGRG	2 cut(s)	71, 200
EcoT38I	GRGCYC	1 cut(s)	201
FaiI	YATR	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	99, 271
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	99, 271
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	99, 271
HaeIII	GGCC	2 cut(s)	33, 76
HapII	CCGG	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	4 cut(s)	19, 69, 151, 247
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	3 cut(s)	48, 141, 156
Hpy188III	TCNNGA	2 cut(s)	180, 294
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	3 cut(s)	32, 121, 124
HpyCH4III	ACNGT	3 cut(s)	112, 258, 302
HpyCH4IV	ACGT	1 cut(s)	122
HpyF3I	CTNAG	3 cut(s)	85, 140, 195
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	43, 136
LpnPI	CCDG	4 cut(s)	47, 79, 175, 193
Lsp1109I	GCAGC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	45, 138
MboI	GATC	2 cut(s)	43, 136
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	2 cut(s)	43, 136
MhlI	GDGCHC	2 cut(s)	201, 207
MlyI	GAGTC	3 cut(s)	13, 63, 256
MnlI	CCTC	3 cut(s)	33, 94, 127
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	17
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	43, 136
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	151
PflFI	GACNNNGTC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	100, 272
PleI	GAGTC	3 cut(s)	13, 63, 255
PpsI	GAGTC	3 cut(s)	13, 63, 255
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	43, 136
PsyI	GACNNNGTC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	99, 271
Sau3AI	GATC	2 cut(s)	43, 136
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	3 cut(s)	13, 63, 256
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	201, 207
SetI	ASST	4 cut(s)	125, 191, 240, 272
SmiMI	CAYNNNNRTG	1 cut(s)	110
SsiI	CCGC	2 cut(s)	98, 131
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	3 cut(s)	112, 258, 302
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	116, 245, 250
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	88
TspRI	CASTG	1 cut(s)	305
Tth111I	GACNNNGTC	1 cut(s)	121
XbaI	TCTAGA	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.