Rh7AG504900
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018598
Physical Location & Seq
Forward (+)
70569917 .. 70570099
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG504900.1

Sequence Viewer

Length: 183 bp
ATGGCATTACCCGGACTCGGGCCTTTCGCCTCAGTCGCTACAGCGGCGACCACCACGGTGTTGACGACGTCGTTGGCGGAGGATCTGAGCAAAAAGATTCGGAAGCCCTACACTATTACCAAGTCTAGAGAGAGCTGGACTGAGCCCGAGCACGGTAAGTTCCTCGAAGCTCTTCAGATGTAA

Protein Analysis

60

Amino Acids

6.52

Weight (kDa)

8.12

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411111
rosa_laevigata RLG00000023310
rosa_multiflora Rmu_sc0008540.1_g000001
rosa_roxburghii Rroxscaffold_2G00109050 Rroxscaffold_2G00109120
rosa_samantha Rh2CG341000 Rh7AG504900 Rh7BG361000 Rh7BG476700
rosa_wichuraiana Rw2G014720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AciI CCGC 2 cut(s) 44, 77
AclWI GGATC 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 17, 18, 152
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 2 cut(s) 135, 170
AluI AGCT 2 cut(s) 135, 170
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 90
Ama87I CYCGRG 2 cut(s) 17, 146
AoxI GGCC 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 12
AvaI CYCGRG 2 cut(s) 17, 146
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 12
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 12
BmeT110I CYCGRG 2 cut(s) 17, 146
BmgT120I GGNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 18, 152
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 17, 18, 152
BseMII CTCAG 3 cut(s) 45, 77, 132
BshFI GGCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 2 cut(s) 17, 146
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 3 cut(s) 17, 18, 152
BsnI GGCC 1 cut(s) 22
BsoBI CYCGRG 2 cut(s) 17, 146
Bsp1286I GDGCHC 2 cut(s) 147, 153
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 2 cut(s) 44, 77
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 3 cut(s) 44, 78, 133
BspPI GGATC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 82
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 58, 155
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 68
BstDEI CTNAG 3 cut(s) 31, 86, 141
BstDSI CCRYGG 1 cut(s) 54
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 20
CviJI RGCY 5 cut(s) 22, 106, 135, 145, 170
CviKI_1 RGCY 5 cut(s) 22, 106, 135, 145, 170
DdeI CTNAG 3 cut(s) 31, 86, 141
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 2 cut(s) 17, 146
EcoT38I GRGCYC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 2 cut(s) 15, 97
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 87, 102, 177
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 2 cut(s) 70, 73
HpyCH4III ACNGT 2 cut(s) 58, 155
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpyF3I CTNAG 3 cut(s) 31, 86, 141
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 82
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 25, 121
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 68
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 147, 153
MlyI GAGTC 1 cut(s) 9
MnlI CCTC 3 cut(s) 40, 73, 173
MroXI GAANNNNTTC 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NciI CCSGG 1 cut(s) 12
NdeII GATC 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 97
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 2 cut(s) 147, 153
SetI ASST 3 cut(s) 71, 137, 172
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 56
SsiI CCGC 2 cut(s) 44, 77
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 58, 155
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 165
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 67
XbaI TCTAGA 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.