Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018598

Physical Location & Seq

Genomic Coordinates Forward (+)

33153718 .. 33171704

Gene Structure 17987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTCGTGCTCGAGTTTTTGGCCGGTGACCCGGAGACCGATCAAAGCGGCGAAGAAGAAGGAGGGCGGGATTGGCTGCGGCGAGGTCAAAAGGTGGATGCCGCAGATGCCGTCCGGAATATGATCGTGCATCCGGATTTGAAGCCAAGCAATTTGTTGATTGGGGAGGACGAAGAAGGGCATCGCGAGAGTGAAGAAATAGTGATGCTAGCATCCTGGACTTGGTTGATTCAGCGCAAAAAGGCCACCATAGAAGCACCCAAAGCTTCAGTTACAGAAAGCTACCCATTACTCTTCCAAAGATCTTTGTTTTCAGCTCTTTCCTCAATTGGAAGCCAGATTACTTGGATCAAGAAGCTTCCACCAGCCAAGAAGCAAATGAAGATTGGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

5.74

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018598)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411111
rosa_laevigata	RLG00000023310
rosa_multiflora	Rmu_sc0008540.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109050 Rroxscaffold_2G00109120
rosa_samantha	Rh2CG341000 Rh7AG504900 Rh7BG361000 Rh7BG476700
rosa_wichuraiana	Rw2G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AccIII	TCCGGA	2 cut(s)	114, 133
AciI	CCGC	4 cut(s)	48, 67, 79, 102
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	4 cut(s)	266, 282, 317, 358
AluI	AGCT	4 cut(s)	266, 282, 317, 358
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	11
Aor13HI	TCCGGA	2 cut(s)	114, 133
AoxI	GGCC	2 cut(s)	21, 243
ApeKI	GCWGC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	325, 357
BauI	CACGAG	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	302
BisI	GCNGC	4 cut(s)	49, 77, 80, 102
BlsI	GCNGC	4 cut(s)	50, 78, 81, 103
Bme1390I	CCNGG	2 cut(s)	32, 217
BmeT110I	CYCGRG	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	32, 217
BmsI	GCATC	6 cut(s)	88, 97, 139, 190, 195, 221
BmtI	GCTAGC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	29
BsaWI	WCCGGW	2 cut(s)	114, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	23
BseAI	TCCGGA	2 cut(s)	114, 133
BseBI	CCWGG	1 cut(s)	217
BseGI	GGATG	3 cut(s)	103, 130, 212
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	23, 245
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	4 cut(s)	24, 32, 115, 134
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	23, 245
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp13I	TCCGGA	2 cut(s)	114, 133
Bsp143I	GATC	4 cut(s)	40, 123, 302, 348
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	4 cut(s)	48, 67, 79, 102
BspANI	GGCC	2 cut(s)	23, 245
BspEI	TCCGGA	2 cut(s)	114, 133
BspFNI	CGCG	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	4 cut(s)	40, 123, 302, 348
BssSI	CACGAG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	3 cut(s)	103, 130, 212
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	43, 126, 305, 351
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	40, 123, 302, 348
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 107, 263
BstNI	CCWGG	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	30, 215
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	23, 245
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	103, 130, 212
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	23
DpnI	GATC	4 cut(s)	42, 125, 304, 350
DpnII	GATC	4 cut(s)	40, 123, 302, 348
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	11
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	215
FaiI	YATR	2 cut(s)	122, 251
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	49, 77, 80, 102
FokI	GGATG	3 cut(s)	110, 117, 199
Fsp4HI	GCNGC	4 cut(s)	49, 77, 80, 102
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	49, 77, 80, 102
HaeIII	GGCC	2 cut(s)	23, 245
HapII	CCGG	4 cut(s)	24, 32, 115, 134
HhaI	GCGC	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	2 cut(s)	264, 356
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	4 cut(s)	24, 32, 115, 134
HphI	GGTGA	1 cut(s)	38
Hpy188III	TCNNGA	4 cut(s)	115, 134, 185, 352
HpyAV	CCTTC	2 cut(s)	53, 170
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 107, 263
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	2 cut(s)	114, 133
Kzo9I	GATC	4 cut(s)	40, 123, 302, 348
LpnPI	CCDG	8 cut(s)	37, 45, 128, 147, 202, 229, 350, 378
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	6 cut(s)	88, 97, 139, 190, 195, 221
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	26, 271
MalI	GATC	4 cut(s)	42, 125, 304, 350
MboI	GATC	4 cut(s)	40, 123, 302, 348
MboII	GAAGA	6 cut(s)	65, 68, 185, 206, 286, 394
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	151, 327
MnlI	CCTC	4 cut(s)	56, 77, 160, 334
MroI	TCCGGA	2 cut(s)	114, 133
MspI	CCGG	4 cut(s)	24, 32, 115, 134
MspR9I	CCNGG	2 cut(s)	32, 217
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	73, 107, 263
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	4 cut(s)	40, 123, 302, 348
NheI	GCTAGC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	26
NruI	TCGCGA	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	50, 78, 81, 103
Psp6I	CCWGG	1 cut(s)	215
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	215
PspXI	VCTCGAGB	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	302
RruI	TCGCGA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	49, 77, 80, 102
Sau3AI	GATC	4 cut(s)	40, 123, 302, 348
ScrFI	CCNGG	2 cut(s)	32, 217
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	6 cut(s)	88, 96, 268, 284, 319, 360
SfaNI	GCATC	6 cut(s)	88, 97, 139, 190, 195, 221
Sfr274I	CTCGAG	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	151, 327
SsiI	CCGC	4 cut(s)	48, 67, 79, 102
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	30, 215
TaqI	TCGA	2 cut(s)	12, 391
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	151, 327
TauI	GCSGC	3 cut(s)	51, 82, 104
TfiI	GAWTC	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	11
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.