Rh7BG476700

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018598
Physical Location & Seq
Forward (+)
56199447 .. 56200967
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG476700.1

Sequence Viewer

Length: 516 bp
ATGGCATTACCCGGACTCGGGCCTTTCGCCTCAGTCGCTACAGCGGCGACCACCACGGTGTTGACGACGTCGTTGGCGGAGGATCTGAGCAAAAAGATTCGGAAGCCCTACACTATTACCAAGTCTAGAGAGAGCTGGACTGAGCCCGAGCACGGTAAGTTCCTCGAAGCTCTTCAGATTGACAATGATGAGGGACCTATGAGTCTTGAAGATAAAGCGAGGAAGAAGGAAATGAGGAAGGGTATGGATCTTGCTACGACGCTGGAACGTATAGAGAAAAACTTTGTCATTACTGATCCAAGGCTGCCTGATAATCCCATTATATTTGCATCCGACAGCTTCTTAGAGCTAACGGAGTACAGTCGCGAAGAAATATTGGGAAGAAATTGCAGATTCCTTCAAGGACCTGAGACTGATCCAGCAACTGTGAAAAAAATAAGAGAGGCAATTGACAACCAGACTGACGTGACTGTACAACTGATCAATTACACGAAAAGCGGTATGTTTCTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

171

Amino Acids

19.22

Weight (kDa)

5.2

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 103 - 167 2.5e-12 PAS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411111
rosa_laevigata RLG00000023310
rosa_multiflora Rmu_sc0008540.1_g000001
rosa_roxburghii Rroxscaffold_2G00109050 Rroxscaffold_2G00109120
rosa_samantha Rh2CG341000 Rh7AG504900 Rh7BG361000 Rh7BG476700
rosa_wichuraiana Rw2G014720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 201
AatII GACGTC 1 cut(s) 71
AccII CGCG 1 cut(s) 366
AciI CCGC 3 cut(s) 44, 77, 498
AclWI GGATC 4 cut(s) 90, 255, 290, 410
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 2 cut(s) 359, 474
AfiI CCNNNNNNNGG 3 cut(s) 17, 18, 152
AgsI TTSAA 2 cut(s) 209, 401
AjiI CACGTC 1 cut(s) 466
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 4 cut(s) 135, 170, 339, 349
AluI AGCT 4 cut(s) 135, 170, 339, 349
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 4 cut(s) 90, 255, 290, 410
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 2 cut(s) 17, 146
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 20, 194, 404
AsuC2I CCSGG 1 cut(s) 12
AvaI CYCGRG 2 cut(s) 17, 146
AvaII GGWCC 2 cut(s) 194, 404
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 291
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 45, 305
BlsI GCNGC 2 cut(s) 46, 306
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 2 cut(s) 194, 404
BmeT110I CYCGRG 2 cut(s) 17, 146
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 3 cut(s) 20, 194, 404
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 54, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 18, 152
BseDI CCNNGG 2 cut(s) 54, 299
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 3 cut(s) 17, 18, 152
BseMII CTCAG 4 cut(s) 45, 77, 132, 399
BseXI GCAGC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 2 cut(s) 17, 146
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 3 cut(s) 17, 18, 152
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 1 cut(s) 22
BsoBI CYCGRG 2 cut(s) 17, 146
Bsp1286I GDGCHC 2 cut(s) 147, 153
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 5 cut(s) 82, 247, 295, 415, 480
Bsp68I TCGCGA 1 cut(s) 366
BspACI CCGC 3 cut(s) 44, 77, 498
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 4 cut(s) 44, 78, 133, 400
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 4 cut(s) 90, 255, 290, 410
BspQI GCTCTTC 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 54, 299
BssMI GATC 5 cut(s) 82, 247, 295, 415, 480
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 5 cut(s) 58, 155, 362, 427, 472
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 472
BstDEI CTNAG 5 cut(s) 31, 86, 141, 343, 408
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 5 cut(s) 85, 250, 298, 418, 483
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 5 cut(s) 82, 247, 295, 415, 480
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 2 cut(s) 82, 247
BstYI RGATCY 2 cut(s) 82, 247
BsuRI GGCC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 329
BtuMI TCGCGA 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 3 cut(s) 20, 194, 404
CseI GACGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 358, 473
CviJI RGCY 8 cut(s) 22, 106, 135, 145, 170, 304, 339, 349
CviKI_1 RGCY 8 cut(s) 22, 106, 135, 145, 170, 304, 339, 349
CviQI GTAC 2 cut(s) 358, 473
DdeI CTNAG 5 cut(s) 31, 86, 141, 343, 408
DpnI GATC 5 cut(s) 84, 249, 297, 417, 482
DpnII GATC 5 cut(s) 82, 247, 295, 415, 480
DrdI GACNNNNNNGTC 1 cut(s) 201
DseDI GACNNNNNNGTC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 194, 404
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 2 cut(s) 17, 146
EcoO109I RGGNCCY 2 cut(s) 194, 404
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 299
FaiI YATR 5 cut(s) 200, 245, 272, 323, 503
FaqI GGGAC 1 cut(s) 207
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 45, 305
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 45, 305
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 45, 305
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 4 cut(s) 15, 97, 202, 393
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 4 cut(s) 87, 102, 177, 334
Hpy188III TCNNGA 3 cut(s) 126, 206, 365
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 3 cut(s) 70, 73, 262
HpyAV CCTTC 3 cut(s) 220, 232, 407
HpyCH4III ACNGT 5 cut(s) 58, 155, 362, 427, 472
HpyCH4IV ACGT 3 cut(s) 68, 268, 465
HpyCH4V TGCA 2 cut(s) 329, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpyF3I CTNAG 5 cut(s) 31, 86, 141, 343, 408
HpySE526I ACGT 3 cut(s) 68, 268, 465
Hsp92I GRCGYC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 5 cut(s) 82, 247, 295, 415, 480
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 25, 121, 248, 321, 420, 432, 470
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 126
MaeII ACGT 3 cut(s) 68, 268, 465
MaeIII GTNAC 1 cut(s) 466
MalI GATC 5 cut(s) 84, 249, 297, 417, 482
MboI GATC 5 cut(s) 82, 247, 295, 415, 480
MboII GAAGA 5 cut(s) 164, 221, 235, 380, 393
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 82, 247
MhlI GDGCHC 2 cut(s) 147, 153
MluCI AATT 3 cut(s) 385, 447, 484
MlyI GAGTC 2 cut(s) 9, 211
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 7 cut(s) 40, 73, 173, 184, 213, 228, 436
MroXI GAANNNNTTC 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 447
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NciI CCSGG 1 cut(s) 12
NdeII GATC 5 cut(s) 82, 247, 295, 415, 480
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 466
NruI TCGCGA 1 cut(s) 366
OliI CACNNNNGTG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 97, 393
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 46, 306
PleI GAGTC 2 cut(s) 9, 210
PpsI GAGTC 2 cut(s) 9, 210
PpuMI RGGWCCY 2 cut(s) 194, 404
Psp5II RGGWCCY 2 cut(s) 194, 404
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 3 cut(s) 20, 194, 404
PspPPI RGGWCCY 2 cut(s) 194, 404
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 82, 247
PsyI GACNNNGTC 1 cut(s) 67
RruI TCGCGA 1 cut(s) 366
RsaI GTAC 2 cut(s) 359, 474
RsaNI GTAC 2 cut(s) 358, 473
RseI CAYNNNNRTG 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 2 cut(s) 45, 305
Sau3AI GATC 5 cut(s) 82, 247, 295, 415, 480
Sau96I GGNCC 3 cut(s) 20, 194, 404
SchI GAGTC 2 cut(s) 9, 211
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 2 cut(s) 147, 153
SetI ASST 9 cut(s) 71, 137, 172, 199, 271, 341, 351, 409, 468
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 194, 404
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 3 cut(s) 385, 447, 484
SsiI CCGC 3 cut(s) 44, 77, 498
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 5 cut(s) 58, 155, 362, 427, 472
TaiI ACGT 3 cut(s) 71, 271, 468
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 385, 447, 484
TatI WGTACW 2 cut(s) 357, 472
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 2 cut(s) 97, 393
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 466
TspGWI ACGGA 1 cut(s) 368
Tth111I GACNNNGTC 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 194, 404
XbaI TCTAGA 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.