Rw2G014720

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018598
Physical Location & Seq
Reverse (-)
16808381 .. 16809841
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014720.1

Sequence Viewer

Length: 465 bp
ATGAGTCTTGAAGATAAAGCGAGGAAGAAGGAAATGAGGAAGGGTATGGATCTTGCTACGACGCTGGAACGTATAGAGAAAAACTTTGTCATTACTGATCCAAGGCTGCCTGATAATCCCATTATATTTGCATCCGACAGCTTCTTAGAGCTAACGGAGTACAGCCGCGAAGAAATATTGGGAAGAAATTGCAGATTCCTTCAAGGACCTGAGACTGATCCAGCAACTGTGAAAAAAATAAGAGAGGCAATTGACAACCAGACTGACGTGACTGTACAACTGATCAATTACACGAAAAGCGGCAAAAAATTCTGGAATGTCTTTCATCTGCAGCCTATGTCTTTCATTTGTAGCTCTTCTAACTATGTACTATCAAAAGACATTTGCTCAAGAGGATTGAGAAATTATAACAGAGATGGGATACGTGTCCAGAAGAAAAATTGGAAGGTTATCTTTATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

154

Amino Acids

17.99

Weight (kDa)

9.3

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 37 - 113 1.1e-16 PAS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411111
rosa_laevigata RLG00000023310
rosa_multiflora Rmu_sc0008540.1_g000001
rosa_roxburghii Rroxscaffold_2G00109050 Rroxscaffold_2G00109120
rosa_samantha Rh2CG341000 Rh7AG504900 Rh7BG361000 Rh7BG476700
rosa_wichuraiana Rw2G014720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 166, 300
AclWI GGATC 3 cut(s) 57, 92, 212
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 3 cut(s) 161, 276, 369
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 2 cut(s) 11, 203
AjiI CACGTC 1 cut(s) 268
AluBI AGCT 3 cut(s) 141, 151, 354
AluI AGCT 3 cut(s) 141, 151, 354
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 3 cut(s) 57, 92, 212
AlwNI CAGNNNCTG 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 106, 331
ApoI RAATTY 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 93, 343
BccI CCATC 1 cut(s) 410
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 4 cut(s) 107, 166, 301, 332
BlsI GCNGC 4 cut(s) 108, 167, 302, 333
Bme18I GGWCC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 93, 343
Bsh1236I CGCG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 4 cut(s) 49, 97, 217, 282
BspACI CCGC 2 cut(s) 166, 300
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 3 cut(s) 57, 92, 212
BspQI GCTCTTC 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 4 cut(s) 49, 97, 217, 282
BssT1I CCWWGG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 229, 274
Bst6I CTCTTC 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 145, 210
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 4 cut(s) 52, 100, 220, 285
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 49, 97, 217, 282
BstSFI CTRYAG 1 cut(s) 329
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 93, 343
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuI GTATCC 1 cut(s) 414
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 131
CaiI CAGNNNCTG 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 160, 275, 368
CviJI RGCY 6 cut(s) 106, 141, 151, 165, 334, 354
CviKI_1 RGCY 6 cut(s) 106, 141, 151, 165, 334, 354
CviQI GTAC 3 cut(s) 160, 275, 368
DdeI CTNAG 2 cut(s) 145, 210
DpnI GATC 4 cut(s) 51, 99, 219, 284
DpnII GATC 4 cut(s) 49, 97, 217, 282
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaiI YATR 6 cut(s) 47, 74, 125, 338, 366, 408
FalI AAGNNNNNCTT 1 cut(s) 437
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 107, 166, 301, 332
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 107, 166, 301, 332
GluI GCNGC 4 cut(s) 107, 166, 301, 332
HgaI GACGC 1 cut(s) 70
HinfI GANTC 2 cut(s) 4, 195
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 4 cut(s) 8, 313, 390, 430
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 22, 34, 209, 439
HpyCH4III ACNGT 2 cut(s) 229, 274
HpyCH4IV ACGT 3 cut(s) 70, 267, 424
HpyCH4V TGCA 3 cut(s) 131, 192, 331
HpyF3I CTNAG 2 cut(s) 145, 210
HpySE526I ACGT 3 cut(s) 70, 267, 424
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 4 cut(s) 49, 97, 217, 282
LguI GCTCTTC 1 cut(s) 361
LpnPI CCDG 7 cut(s) 50, 123, 222, 234, 272, 298, 443
Lsp1109I GCAGC 2 cut(s) 93, 343
LweI GCATC 1 cut(s) 140
MaeII ACGT 3 cut(s) 70, 267, 424
MaeIII GTNAC 1 cut(s) 268
MalI GATC 4 cut(s) 51, 99, 219, 284
MboI GATC 4 cut(s) 49, 97, 217, 282
MboII GAAGA 6 cut(s) 23, 37, 182, 195, 348, 445
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 49
MluCI AATT 6 cut(s) 187, 249, 286, 308, 403, 439
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 4 cut(s) 15, 30, 238, 386
MunI CAATTG 1 cut(s) 249
MvnI CGCG 1 cut(s) 168
NdeII GATC 4 cut(s) 49, 97, 217, 282
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 4 cut(s) 108, 167, 302, 333
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 206
PsiI TTATAA 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 206
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PstI CTGCAG 1 cut(s) 333
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 3 cut(s) 161, 276, 369
RsaNI GTAC 3 cut(s) 160, 275, 368
SapI GCTCTTC 1 cut(s) 361
SatI GCNGC 4 cut(s) 107, 166, 301, 332
Sau3AI GATC 4 cut(s) 49, 97, 217, 282
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 13
SetI ASST 8 cut(s) 73, 143, 153, 211, 270, 356, 427, 450
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 6 cut(s) 187, 249, 286, 308, 403, 439
SsiI CCGC 2 cut(s) 166, 300
SspI AATATT 1 cut(s) 177
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 229, 274
TaiI ACGT 3 cut(s) 73, 270, 427
TasI AATT 6 cut(s) 187, 249, 286, 308, 403, 439
TatI WGTACW 3 cut(s) 159, 274, 367
TauI GCSGC 2 cut(s) 168, 303
TfiI GAWTC 1 cut(s) 195
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 106, 331
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 314, 334
TspGWI ACGGA 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.