Rh7BG361000

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018598
Physical Location & Seq
Reverse (-)
38175983 .. 38181496
5514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG361000.1

Sequence Viewer

Length: 924 bp
ATGGTATCCAAAAATGTGACTCCTCCTGTCGGCCTGTACTTGGATCCGAACGAAATGGCATTACCCGGACTCGGGCCTTTCGCCTCAGTCGCTACAGCGGCGACCACCACGGTGTCGACGACGTCGTTGGCGGAGGATCTGAGCAAAAAGATTCGGAAGCCCTACACTATTACCAAGTCTAGAGAGAGCTGGACTGAGCCCGAGCACGGTAAGTTACTCGAAGCTCTTCAGATTGACAATGATGAGGGACCTATGAGTCTTGAAGATAAAGCGAGGAAGAAGGAAATGAGGAAGGGTATGGATCTTGCTACGACGCTGGAACGTATAGAGAAAAACTTTGTCATTACTGATCCAAGGCTGCCTGGTAATCCCATTATATTTGCATCCGACAGCTTCTTAGAGCTAACGGAGTACAGCCGCGAAGAAATATTGGGAAGAAATTGCAGATTCCTTCAAGGACCTGAGACTGATCCAGCAACTGTGAAAAAAATAAGAGAGGCAATTGACAACCAGACTGACGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCAGATGCCAATATGAAACCAGAAGATTTATGGATGAATCATTCGAAGGTAGTTCATCCAAAGCCTCATAGAAGGGACAACCTCCCTTGGAGAGCTATTCAAAAGATTCTAGACAGTGGAGAACAGATAGGATTGAAACATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTCCAATTGTGTGGAACTGATCAGTACTACGCCATGAAGGCTATGGATAAGGGTATCATGCTCAATAGGAACAAGACAACAAATAAGTTCTCAGCACCTAATACTTTAGTTCATTCATACCACAGAAAGATCATGAATACTGTCTTTGAAATGGCTATTAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

307

Amino Acids

34.49

Weight (kDa)

7.76

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 120 - 181 2.7e-09 PAS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411111
rosa_laevigata RLG00000023310
rosa_multiflora Rmu_sc0008540.1_g000001
rosa_roxburghii Rroxscaffold_2G00109050 Rroxscaffold_2G00109120
rosa_samantha Rh2CG341000 Rh7AG504900 Rh7BG361000 Rh7BG476700
rosa_wichuraiana Rw2G014720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 255
AatII GACGTC 2 cut(s) 125, 522
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 420
AciI CCGC 3 cut(s) 98, 131, 418
AclWI GGATC 7 cut(s) 38, 51, 144, 309, 344, 464, 736
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 2 cut(s) 122, 519
AfaI GTAC 3 cut(s) 38, 413, 782
AfiI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 206
AgsI TTSAA 5 cut(s) 263, 455, 665, 700, 905
AjnI CCWGG 1 cut(s) 361
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 5 cut(s) 189, 224, 393, 403, 659
AluI AGCT 5 cut(s) 189, 224, 393, 403, 659
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 458, 521
AlwI GGATC 7 cut(s) 38, 51, 144, 309, 344, 464, 736
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 2 cut(s) 71, 200
AoxI GGCC 2 cut(s) 31, 74
ApeKI GCWGC 2 cut(s) 358, 551
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 4 cut(s) 74, 248, 458, 757
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 746
AsuII TTCGAA 1 cut(s) 608
AvaI CYCGRG 2 cut(s) 71, 200
AvaII GGWCC 3 cut(s) 248, 458, 757
BamHI GGATCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 345, 563
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 458, 521
BfaI CTAG 2 cut(s) 180, 674
BfmI CTRYAG 2 cut(s) 93, 531
BfuI GTATCC 1 cut(s) 16
BglI GCCNNNNNGGC 1 cut(s) 794
BisI GCNGC 4 cut(s) 99, 359, 418, 552
BlsI GCNGC 4 cut(s) 100, 360, 419, 553
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 2 cut(s) 66, 363
Bme18I GGWCC 3 cut(s) 248, 458, 757
BmeT110I CYCGRG 2 cut(s) 71, 200
BmgT120I GGNCC 4 cut(s) 74, 248, 458, 757
BmiI GGNNCC 2 cut(s) 45, 249
BmrFI CCNGG 2 cut(s) 66, 363
BmsI GCATC 2 cut(s) 392, 559
BoxI GACNNNNGTC 1 cut(s) 518
Bpu14I TTCGAA 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 2 cut(s) 122, 519
BsaJI CCNNGG 4 cut(s) 108, 353, 650, 723
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 206
Bse1I ACTGG 1 cut(s) 745
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 4 cut(s) 108, 353, 650, 723
BseGI GGATG 3 cut(s) 383, 603, 619
BseLI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 206
BseMII CTCAG 5 cut(s) 99, 131, 186, 453, 861
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 345, 563
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 2 cut(s) 33, 76
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 71, 200
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 2 cut(s) 261, 653
BslI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 206
BsmAI GTCTC 2 cut(s) 458, 521
BsmFI GGGAC 2 cut(s) 261, 653
BsnI GGCC 2 cut(s) 33, 76
BsoBI CYCGRG 2 cut(s) 71, 200
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 201, 207
Bsp143I GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
BspACI CCGC 3 cut(s) 98, 131, 418
BspANI GGCC 2 cut(s) 33, 76
BspCNI CTCAG 5 cut(s) 98, 132, 187, 454, 860
BspFNI CGCG 1 cut(s) 420
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 2 cut(s) 45, 249
BspMAI CTGCAG 1 cut(s) 535
BspPI GGATC 7 cut(s) 38, 51, 144, 309, 344, 464, 736
BspQI GCTCTTC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 608
BsrI ACTGG 1 cut(s) 745
BssECI CCNNGG 4 cut(s) 108, 353, 650, 723
BssMI GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
BssNI GRCGYC 2 cut(s) 122, 519
BssT1I CCWWGG 3 cut(s) 353, 650, 723
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 5 cut(s) 112, 209, 481, 680, 898
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 2 cut(s) 122, 519
BstBI TTCGAA 1 cut(s) 608
BstDEI CTNAG 6 cut(s) 85, 140, 195, 397, 462, 847
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 3 cut(s) 383, 603, 619
BstFNI CGCG 1 cut(s) 420
BstKTI GATC 8 cut(s) 46, 139, 304, 352, 472, 731, 778, 888
BstMAI GTCTC 2 cut(s) 458, 521
BstMBI GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 718, 794
BstNI CCWGG 1 cut(s) 363
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 2 cut(s) 64, 361
BstSFI CTRYAG 2 cut(s) 93, 531
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 345, 563
BstX2I RGATCY 4 cut(s) 43, 136, 301, 728
BstXI CCANNNNNNTGG 1 cut(s) 767
BstYI RGATCY 4 cut(s) 43, 136, 301, 728
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 33, 76
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 3 cut(s) 383, 603, 619
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 685, 751
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 1 cut(s) 888
Cfr13I GGNCC 4 cut(s) 74, 248, 458, 757
CseI GACGC 1 cut(s) 322
Csp6I GTAC 3 cut(s) 37, 412, 781
CviAII CATG 3 cut(s) 790, 814, 889
CviQI GTAC 3 cut(s) 37, 412, 781
DdeI CTNAG 6 cut(s) 85, 140, 195, 397, 462, 847
DpnI GATC 8 cut(s) 45, 138, 303, 351, 471, 730, 777, 887
DpnII GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
DrdI GACNNNNNNGTC 1 cut(s) 255
DseDI GACNNNNNNGTC 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 3 cut(s) 353, 650, 723
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 3 cut(s) 248, 458, 757
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 2 cut(s) 71, 200
EcoO109I RGGNCCY 2 cut(s) 248, 458
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 353, 650, 723
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 3 cut(s) 353, 650, 723
FaeI CATG 3 cut(s) 793, 817, 892
FaqI GGGAC 2 cut(s) 261, 653
FatI CATG 3 cut(s) 789, 813, 888
FbaI TGATCA 1 cut(s) 775
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 4 cut(s) 99, 359, 418, 552
FokI GGATG 3 cut(s) 370, 606, 610
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 99, 359, 418, 552
FspBI CTAG 2 cut(s) 180, 674
GluI GCNGC 4 cut(s) 99, 359, 418, 552
HaeIII GGCC 2 cut(s) 33, 76
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 322
Hin1I GRCGYC 2 cut(s) 122, 519
Hin1II CATG 3 cut(s) 793, 817, 892
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 7 cut(s) 19, 69, 151, 256, 447, 601, 670
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 5 cut(s) 48, 141, 156, 231, 388
Hpy188III TCNNGA 5 cut(s) 180, 260, 566, 674, 889
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 4 cut(s) 121, 124, 127, 316
HpyAV CCTTC 6 cut(s) 274, 286, 461, 604, 630, 787
HpyCH4III ACNGT 5 cut(s) 112, 209, 481, 680, 898
HpyCH4IV ACGT 3 cut(s) 122, 322, 519
HpyCH4V TGCA 4 cut(s) 383, 444, 533, 751
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 718, 794
HpyF3I CTNAG 6 cut(s) 85, 140, 195, 397, 462, 847
HpySE526I ACGT 3 cut(s) 122, 322, 519
Hsp92I GRCGYC 2 cut(s) 122, 519
Hsp92II CATG 3 cut(s) 793, 817, 892
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
LguI GCTCTTC 1 cut(s) 231
Lsp1109I GCAGC 2 cut(s) 345, 563
LweI GCATC 2 cut(s) 392, 559
MaeI CTAG 2 cut(s) 180, 674
MaeII ACGT 3 cut(s) 122, 322, 519
MaeIII GTNAC 2 cut(s) 16, 213
MalI GATC 8 cut(s) 45, 138, 303, 351, 471, 730, 777, 887
MboI GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
MboII GAAGA 6 cut(s) 218, 275, 289, 434, 447, 599
MfeI CAATTG 2 cut(s) 501, 761
MflI RGATCY 4 cut(s) 43, 136, 301, 728
MhlI GDGCHC 2 cut(s) 201, 207
MluCI AATT 3 cut(s) 439, 501, 761
MlyI GAGTC 3 cut(s) 13, 63, 265
MmeI TCCRAC 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 3 cut(s) 537, 708, 915
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 66, 363
MunI CAATTG 2 cut(s) 501, 761
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 718, 794
NciI CCSGG 1 cut(s) 66
NdeII GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
NlaIII CATG 3 cut(s) 793, 817, 892
NlaIV GGNNCC 2 cut(s) 45, 249
NmuCI GTSAC 1 cut(s) 16
NspV TTCGAA 1 cut(s) 608
OliI CACNNNNGTG 1 cut(s) 110
PagI TCATGA 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 122
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 4 cut(s) 151, 447, 601, 670
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 100, 360, 419, 553
PleI GAGTC 3 cut(s) 13, 63, 264
PpsI GAGTC 3 cut(s) 13, 63, 264
PpuMI RGGWCCY 2 cut(s) 248, 458
PshAI GACNNNNGTC 1 cut(s) 518
Psp5II RGGWCCY 2 cut(s) 248, 458
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 45, 249
PspPI GGNCC 4 cut(s) 74, 248, 458, 757
PspPPI RGGWCCY 2 cut(s) 248, 458
PstI CTGCAG 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 4 cut(s) 43, 136, 301, 728
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 3 cut(s) 38, 413, 782
RsaNI GTAC 3 cut(s) 37, 412, 781
RseI CAYNNNNRTG 1 cut(s) 110
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 537, 708, 915
SatI GCNGC 4 cut(s) 99, 359, 418, 552
Sau3AI GATC 8 cut(s) 43, 136, 301, 349, 469, 728, 775, 885
Sau96I GGNCC 4 cut(s) 74, 248, 458, 757
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 3 cut(s) 13, 63, 265
ScrFI CCNGG 2 cut(s) 66, 363
SduI GDGCHC 2 cut(s) 201, 207
SfaNI GCATC 2 cut(s) 392, 559
SfcI CTRYAG 2 cut(s) 93, 531
SfuI TTCGAA 1 cut(s) 608
SinI GGWCC 3 cut(s) 248, 458, 757
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 3 cut(s) 439, 501, 761
SsiI CCGC 3 cut(s) 98, 131, 418
SspI AATATT 1 cut(s) 429
SspMI CTAG 2 cut(s) 180, 674
StyD4I CCNGG 2 cut(s) 64, 361
StyI CCWWGG 3 cut(s) 353, 650, 723
TaaI ACNGT 5 cut(s) 112, 209, 481, 680, 898
TaiI ACGT 3 cut(s) 125, 325, 522
TaqI TCGA 3 cut(s) 116, 219, 608
TasI AATT 3 cut(s) 439, 501, 761
TatI WGTACW 3 cut(s) 36, 411, 780
TauI GCSGC 2 cut(s) 101, 420
TfiI GAWTC 4 cut(s) 151, 447, 601, 670
Tru1I TTAA 3 cut(s) 537, 708, 915
Tru9I TTAA 3 cut(s) 537, 708, 915
TscAI CASTG 2 cut(s) 685, 751
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 358, 551
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 7 cut(s) 593, 608, 614, 806, 857, 861, 905
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 685, 751
Tth111I GACNNNGTC 1 cut(s) 121
VpaK11BI GGWCC 3 cut(s) 248, 458, 757
XbaI TCTAGA 2 cut(s) 179, 673
XcmI CCANNNNNNNNNTGG 2 cut(s) 591, 796
XmiI GTMKAC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 180, 674
ZraI GACGTC 2 cut(s) 123, 520
ZrmI AGTACT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.